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Search of human proteins with 41406091
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|41406091 non-imprinted in Prader-Willi/Angelman syndrome 1
isoform 1 [Homo sapiens]
(329 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|41406091 non-imprinted in Prader-Willi/Angelman syndrome 1 is... 639 0.0
gi|214010179 non-imprinted in Prader-Willi/Angelman syndrome 1 i... 499 e-141
gi|57013272 non imprinted in Prader-Willi/Angelman syndrome 2 is... 271 8e-73
gi|57164953 non imprinted in Prader-Willi/Angelman syndrome 2 is... 271 8e-73
gi|57013274 non imprinted in Prader-Willi/Angelman syndrome 2 is... 271 8e-73
gi|46409302 NIPA-like domain containing 1 [Homo sapiens] 264 9e-71
gi|57164951 non imprinted in Prader-Willi/Angelman syndrome 2 is... 251 6e-67
gi|149944536 ichthyin protein [Homo sapiens] 249 3e-66
gi|10092687 NIPA-like domain containing 3 [Homo sapiens] 107 1e-23
gi|13376097 NIPA-like domain containing 2 [Homo sapiens] 102 4e-22
gi|24497554 homeobox A13 [Homo sapiens] 37 0.024
gi|4758392 forkhead box D1 [Homo sapiens] 36 0.041
gi|12751477 forkhead box L2 [Homo sapiens] 35 0.12
gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo ... 34 0.20
gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo ... 34 0.20
gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens] 33 0.27
gi|4504779 integrin, beta 8 precursor [Homo sapiens] 33 0.27
gi|71979932 solute carrier family 7 (cationic amino acid transpo... 33 0.35
gi|89257348 homeo box HB9 [Homo sapiens] 33 0.35
gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens] 33 0.35
gi|5031613 growth differentiation factor 11 precursor [Homo sapi... 33 0.46
gi|73476377 LBXCOR1 homolog [Homo sapiens] 32 0.78
gi|125625322 RALBP1 associated Eps domain containing 2 isoform 2... 32 0.78
gi|125625326 RALBP1 associated Eps domain containing 2 isoform 1... 32 0.78
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 32 1.0
gi|170763515 DMRT-like family A1 [Homo sapiens] 32 1.0
gi|30795196 LIM homeobox protein 2 [Homo sapiens] 31 1.3
gi|133922582 zinc finger protein 358 [Homo sapiens] 31 1.7
gi|4506975 solute carrier family 12 (sodium/potassium/chloride t... 30 2.3
gi|5032179 tripartite motif-containing 28 protein [Homo sapiens] 30 2.3
>gi|41406091 non-imprinted in Prader-Willi/Angelman syndrome 1
isoform 1 [Homo sapiens]
Length = 329
Score = 639 bits (1647), Expect = 0.0
Identities = 329/329 (100%), Positives = 329/329 (100%)
Query: 1 MGTAAAAAAAAAAAAAGEGARSPSPAAVSLGLGVAVVSSLVNGSTFVLQKKGIVRAKRRG 60
MGTAAAAAAAAAAAAAGEGARSPSPAAVSLGLGVAVVSSLVNGSTFVLQKKGIVRAKRRG
Sbjct: 1 MGTAAAAAAAAAAAAAGEGARSPSPAAVSLGLGVAVVSSLVNGSTFVLQKKGIVRAKRRG 60
Query: 61 TSYLTDIVWWAGTIAMAVGQIGNFLAYTAVPTVLVTPLGALGVPFGSILASYLLKEKLNI 120
TSYLTDIVWWAGTIAMAVGQIGNFLAYTAVPTVLVTPLGALGVPFGSILASYLLKEKLNI
Sbjct: 61 TSYLTDIVWWAGTIAMAVGQIGNFLAYTAVPTVLVTPLGALGVPFGSILASYLLKEKLNI 120
Query: 121 LGKLGCLLSCAGSVVLIIHSPKSESVTTQAELEEKLTNPVFVGYLCIVLLMLLLLIFWIA 180
LGKLGCLLSCAGSVVLIIHSPKSESVTTQAELEEKLTNPVFVGYLCIVLLMLLLLIFWIA
Sbjct: 121 LGKLGCLLSCAGSVVLIIHSPKSESVTTQAELEEKLTNPVFVGYLCIVLLMLLLLIFWIA 180
Query: 181 PAHGPTNIMVYISICSLLGSFTVPSTKGIGLAAQDILHNNPSSQRALCLCLVLLAVLGCS 240
PAHGPTNIMVYISICSLLGSFTVPSTKGIGLAAQDILHNNPSSQRALCLCLVLLAVLGCS
Sbjct: 181 PAHGPTNIMVYISICSLLGSFTVPSTKGIGLAAQDILHNNPSSQRALCLCLVLLAVLGCS 240
Query: 241 IIVQFRYINKALECFDSSVFGAIYYVVFTTLVLLASAILFREWSNVGLVDFLGMACGFTT 300
IIVQFRYINKALECFDSSVFGAIYYVVFTTLVLLASAILFREWSNVGLVDFLGMACGFTT
Sbjct: 241 IIVQFRYINKALECFDSSVFGAIYYVVFTTLVLLASAILFREWSNVGLVDFLGMACGFTT 300
Query: 301 VSVGIVLIQVFKEFNFNLGEMNKSNMKTD 329
VSVGIVLIQVFKEFNFNLGEMNKSNMKTD
Sbjct: 301 VSVGIVLIQVFKEFNFNLGEMNKSNMKTD 329
>gi|214010179 non-imprinted in Prader-Willi/Angelman syndrome 1
isoform 2 [Homo sapiens]
Length = 254
Score = 499 bits (1285), Expect = e-141
Identities = 254/254 (100%), Positives = 254/254 (100%)
Query: 76 MAVGQIGNFLAYTAVPTVLVTPLGALGVPFGSILASYLLKEKLNILGKLGCLLSCAGSVV 135
MAVGQIGNFLAYTAVPTVLVTPLGALGVPFGSILASYLLKEKLNILGKLGCLLSCAGSVV
Sbjct: 1 MAVGQIGNFLAYTAVPTVLVTPLGALGVPFGSILASYLLKEKLNILGKLGCLLSCAGSVV 60
Query: 136 LIIHSPKSESVTTQAELEEKLTNPVFVGYLCIVLLMLLLLIFWIAPAHGPTNIMVYISIC 195
LIIHSPKSESVTTQAELEEKLTNPVFVGYLCIVLLMLLLLIFWIAPAHGPTNIMVYISIC
Sbjct: 61 LIIHSPKSESVTTQAELEEKLTNPVFVGYLCIVLLMLLLLIFWIAPAHGPTNIMVYISIC 120
Query: 196 SLLGSFTVPSTKGIGLAAQDILHNNPSSQRALCLCLVLLAVLGCSIIVQFRYINKALECF 255
SLLGSFTVPSTKGIGLAAQDILHNNPSSQRALCLCLVLLAVLGCSIIVQFRYINKALECF
Sbjct: 121 SLLGSFTVPSTKGIGLAAQDILHNNPSSQRALCLCLVLLAVLGCSIIVQFRYINKALECF 180
Query: 256 DSSVFGAIYYVVFTTLVLLASAILFREWSNVGLVDFLGMACGFTTVSVGIVLIQVFKEFN 315
DSSVFGAIYYVVFTTLVLLASAILFREWSNVGLVDFLGMACGFTTVSVGIVLIQVFKEFN
Sbjct: 181 DSSVFGAIYYVVFTTLVLLASAILFREWSNVGLVDFLGMACGFTTVSVGIVLIQVFKEFN 240
Query: 316 FNLGEMNKSNMKTD 329
FNLGEMNKSNMKTD
Sbjct: 241 FNLGEMNKSNMKTD 254
>gi|57013272 non imprinted in Prader-Willi/Angelman syndrome 2
isoform a [Homo sapiens]
Length = 360
Score = 271 bits (692), Expect = 8e-73
Identities = 134/308 (43%), Positives = 206/308 (66%), Gaps = 10/308 (3%)
Query: 30 LGLGVAVVSSLVNGSTFVLQKKGIVRAKRRGT--------SYLTDIVWWAGTIAMAVGQI 81
+GLG+A+ SS+ G +F+L+KKG++R R+G+ +YL + +WWAG ++M G++
Sbjct: 12 IGLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGEV 71
Query: 82 GNFLAYTAVPTVLVTPLGALGVPFGSILASYLLKEKLNILGKLGCLLSCAGSVVLIIHSP 141
NF AY P LVTPLGAL V +IL+SY L E+LN+ GK+GCLLS GS V++IH+P
Sbjct: 72 ANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAP 131
Query: 142 KSESVTTQAELEEKLTNPVFVGYLCIVLLMLLLLIFWIAPAHGPTNIMVYISICSLLGSF 201
K E + T E+ KL +P FV + +V+++ L+LIF + P HG TNI+VYI+ICS++G+F
Sbjct: 132 KEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILVYITICSVIGAF 191
Query: 202 TVPSTKGIGLAAQDILHNNPSSQRALCLCLVLLAVLGCSIIVQFRYINKALECFDSSVFG 261
+V KG+G+A +++ P + L ++LL+++ C + Q Y+N+AL+ F++S+
Sbjct: 192 SVSCVKGLGIAIKELFAGKPVLRHPLA-WILLLSLIVC-VSTQINYLNRALDIFNTSIVT 249
Query: 262 AIYYVVFTTLVLLASAILFREWSNVGLVDFLGMACGFTTVSVGIVLIQVFKEFNFNLGEM 321
IYYV FTT VL SAILF+EW ++ + D +G GF T+ VGI L+ FK+ +F+L +
Sbjct: 250 PIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFKDVSFSLASL 309
Query: 322 NKSNMKTD 329
S K +
Sbjct: 310 PVSFRKDE 317
>gi|57164953 non imprinted in Prader-Willi/Angelman syndrome 2
isoform a [Homo sapiens]
Length = 360
Score = 271 bits (692), Expect = 8e-73
Identities = 134/308 (43%), Positives = 206/308 (66%), Gaps = 10/308 (3%)
Query: 30 LGLGVAVVSSLVNGSTFVLQKKGIVRAKRRGT--------SYLTDIVWWAGTIAMAVGQI 81
+GLG+A+ SS+ G +F+L+KKG++R R+G+ +YL + +WWAG ++M G++
Sbjct: 12 IGLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGEV 71
Query: 82 GNFLAYTAVPTVLVTPLGALGVPFGSILASYLLKEKLNILGKLGCLLSCAGSVVLIIHSP 141
NF AY P LVTPLGAL V +IL+SY L E+LN+ GK+GCLLS GS V++IH+P
Sbjct: 72 ANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAP 131
Query: 142 KSESVTTQAELEEKLTNPVFVGYLCIVLLMLLLLIFWIAPAHGPTNIMVYISICSLLGSF 201
K E + T E+ KL +P FV + +V+++ L+LIF + P HG TNI+VYI+ICS++G+F
Sbjct: 132 KEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILVYITICSVIGAF 191
Query: 202 TVPSTKGIGLAAQDILHNNPSSQRALCLCLVLLAVLGCSIIVQFRYINKALECFDSSVFG 261
+V KG+G+A +++ P + L ++LL+++ C + Q Y+N+AL+ F++S+
Sbjct: 192 SVSCVKGLGIAIKELFAGKPVLRHPLA-WILLLSLIVC-VSTQINYLNRALDIFNTSIVT 249
Query: 262 AIYYVVFTTLVLLASAILFREWSNVGLVDFLGMACGFTTVSVGIVLIQVFKEFNFNLGEM 321
IYYV FTT VL SAILF+EW ++ + D +G GF T+ VGI L+ FK+ +F+L +
Sbjct: 250 PIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFKDVSFSLASL 309
Query: 322 NKSNMKTD 329
S K +
Sbjct: 310 PVSFRKDE 317
>gi|57013274 non imprinted in Prader-Willi/Angelman syndrome 2
isoform a [Homo sapiens]
Length = 360
Score = 271 bits (692), Expect = 8e-73
Identities = 134/308 (43%), Positives = 206/308 (66%), Gaps = 10/308 (3%)
Query: 30 LGLGVAVVSSLVNGSTFVLQKKGIVRAKRRGT--------SYLTDIVWWAGTIAMAVGQI 81
+GLG+A+ SS+ G +F+L+KKG++R R+G+ +YL + +WWAG ++M G++
Sbjct: 12 IGLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGEV 71
Query: 82 GNFLAYTAVPTVLVTPLGALGVPFGSILASYLLKEKLNILGKLGCLLSCAGSVVLIIHSP 141
NF AY P LVTPLGAL V +IL+SY L E+LN+ GK+GCLLS GS V++IH+P
Sbjct: 72 ANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAP 131
Query: 142 KSESVTTQAELEEKLTNPVFVGYLCIVLLMLLLLIFWIAPAHGPTNIMVYISICSLLGSF 201
K E + T E+ KL +P FV + +V+++ L+LIF + P HG TNI+VYI+ICS++G+F
Sbjct: 132 KEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILVYITICSVIGAF 191
Query: 202 TVPSTKGIGLAAQDILHNNPSSQRALCLCLVLLAVLGCSIIVQFRYINKALECFDSSVFG 261
+V KG+G+A +++ P + L ++LL+++ C + Q Y+N+AL+ F++S+
Sbjct: 192 SVSCVKGLGIAIKELFAGKPVLRHPLA-WILLLSLIVC-VSTQINYLNRALDIFNTSIVT 249
Query: 262 AIYYVVFTTLVLLASAILFREWSNVGLVDFLGMACGFTTVSVGIVLIQVFKEFNFNLGEM 321
IYYV FTT VL SAILF+EW ++ + D +G GF T+ VGI L+ FK+ +F+L +
Sbjct: 250 PIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFKDVSFSLASL 309
Query: 322 NKSNMKTD 329
S K +
Sbjct: 310 PVSFRKDE 317
>gi|46409302 NIPA-like domain containing 1 [Homo sapiens]
Length = 410
Score = 264 bits (674), Expect = 9e-71
Identities = 137/306 (44%), Positives = 198/306 (64%), Gaps = 10/306 (3%)
Query: 30 LGLGVAVVSSLVNGSTFVLQKKGIV--------RAKRRGTSYLTDIVWWAGTIAMAVGQI 81
+GL +AV SS+ GS+F+L+KKG++ RA + G SYL + +WW G ++M G+
Sbjct: 70 VGLVLAVSSSIFIGSSFILKKKGLLQLASKGFTRAGQGGHSYLKEWLWWVGLLSMGAGEA 129
Query: 82 GNFLAYTAVPTVLVTPLGALGVPFGSILASYLLKEKLNILGKLGCLLSCAGSVVLIIHSP 141
NF AY P LVTPLGAL V +IL+SY L E LNI GK+GC+LS GS V++IH+P
Sbjct: 130 ANFAAYAFAPATLVTPLGALSVLISAILSSYFLNEHLNIHGKIGCILSILGSTVMVIHAP 189
Query: 142 KSESVTTQAELEEKLTNPVFVGYLCIVLLMLLLLIFWIAPAHGPTNIMVYISICSLLGSF 201
+ E VT+ E+E KL +P F+ + I+ ++ L+LI +AP G TNI+VYISICSL+G+F
Sbjct: 190 QEEEVTSLHEMEMKLRDPGFISFAVIITVISLVLILIVAPKKGQTNILVYISICSLIGAF 249
Query: 202 TVPSTKGIGLAAQDILHNNPSSQRALCLCLVLLAVLGCSIIVQFRYINKALECFDSSVFG 261
+V S KG+G+A ++++ P + L VLLAVL S+ Q Y+NKAL+ F++S+
Sbjct: 250 SVSSVKGLGIAIKELIEWKPVYKHP--LVFVLLAVLVLSVTTQINYLNKALDTFNTSLVT 307
Query: 262 AIYYVVFTTLVLLASAILFREWSNVGLVDFLGMACGFTTVSVGIVLIQVFKEFNFNLGEM 321
IYYV FT++V+ SAILF+EW + D +G GF T+ +GI L+ FK + E+
Sbjct: 308 PIYYVFFTSMVVTCSAILFQEWYGMTAGDIIGTLSGFFTIIIGIFLLHAFKNTDITWSEL 367
Query: 322 NKSNMK 327
+ K
Sbjct: 368 TSTAKK 373
>gi|57164951 non imprinted in Prader-Willi/Angelman syndrome 2
isoform b [Homo sapiens]
Length = 341
Score = 251 bits (641), Expect = 6e-67
Identities = 128/300 (42%), Positives = 196/300 (65%), Gaps = 13/300 (4%)
Query: 30 LGLGVAVVSSLVNGSTFVLQKKGIVRAKRRGTSYLTDIVWWAGTIAMAVGQIGNFLAYTA 89
+GLG+A+ SS+ G +F+L+KKG++R R+G+ A+ G++ NF AY
Sbjct: 12 IGLGLAMSSSIFIGGSFILKKKGLLRLARKGSMR-----------AVGAGEVANFAAYAF 60
Query: 90 VPTVLVTPLGALGVPFGSILASYLLKEKLNILGKLGCLLSCAGSVVLIIHSPKSESVTTQ 149
P LVTPLGAL V +IL+SY L E+LN+ GK+GCLLS GS V++IH+PK E + T
Sbjct: 61 APATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPKEEEIETL 120
Query: 150 AELEEKLTNPVFVGYLCIVLLMLLLLIFWIAPAHGPTNIMVYISICSLLGSFTVPSTKGI 209
E+ KL +P FV + +V+++ L+LIF + P HG TNI+VYI+ICS++G+F+V KG+
Sbjct: 121 NEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILVYITICSVIGAFSVSCVKGL 180
Query: 210 GLAAQDILHNNPSSQRALCLCLVLLAVLGCSIIVQFRYINKALECFDSSVFGAIYYVVFT 269
G+A +++ P + L ++LL+++ C + Q Y+N+AL+ F++S+ IYYV FT
Sbjct: 181 GIAIKELFAGKPVLRHPLA-WILLLSLIVC-VSTQINYLNRALDIFNTSIVTPIYYVFFT 238
Query: 270 TLVLLASAILFREWSNVGLVDFLGMACGFTTVSVGIVLIQVFKEFNFNLGEMNKSNMKTD 329
T VL SAILF+EW ++ + D +G GF T+ VGI L+ FK+ +F+L + S K +
Sbjct: 239 TSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFKDVSFSLASLPVSFRKDE 298
>gi|149944536 ichthyin protein [Homo sapiens]
Length = 466
Score = 249 bits (635), Expect = 3e-66
Identities = 122/300 (40%), Positives = 193/300 (64%), Gaps = 10/300 (3%)
Query: 30 LGLGVAVVSSLVNGSTFVLQKKGIVRAKRRGTS--------YLTDIVWWAGTIAMAVGQI 81
+GLG+A +SS + GS+ +L+KKG++R G + YL D +WWAG + MA G++
Sbjct: 120 IGLGLAFLSSFLIGSSVILKKKGLLRLVATGATRAVDGGFGYLKDAMWWAGFLTMAAGEV 179
Query: 82 GNFLAYTAVPTVLVTPLGALGVPFGSILASYLLKEKLNILGKLGCLLSCAGSVVLIIHSP 141
NF AY P +VTPLGAL V +IL+SY L+E LN+LGKLGC++ AGS V++IH+P
Sbjct: 180 ANFGAYAFAPATVVTPLGALSVLISAILSSYFLRESLNLLGKLGCVICVAGSTVMVIHAP 239
Query: 142 KSESVTTQAELEEKLTNPVFVGYLCIVLLMLLLLIFWIAPAHGPTNIMVYISICSLLGSF 201
+ E VTT E+ K+ + F+ + ++L+ L+LIF IAP +G NI++YI ICS++G+F
Sbjct: 240 EEEKVTTIMEMASKMKDTGFIVFAVLLLVSCLILIFVIAPRYGQRNILIYIIICSVIGAF 299
Query: 202 TVPSTKGIGLAAQDILHNNPSSQRALCLCLVLLAVLGCSIIVQFRYINKALECFDSSVFG 261
+V + KG+G+ ++ P + L L L +L S+ Q ++N+AL+ F++S+
Sbjct: 300 SVAAVKGLGITIKNFFQGLPVVRHPLPYILSL--ILALSLSTQVNFLNRALDIFNTSLVF 357
Query: 262 AIYYVVFTTLVLLASAILFREWSNVGLVDFLGMACGFTTVSVGIVLIQVFKEFNFNLGEM 321
IYYV FTT+V+ +S ILF+EW ++ VD G GF T+ +G+ ++ FK+ + + +
Sbjct: 358 PIYYVFFTTVVVTSSIILFKEWYSMSAVDIAGTLSGFVTIILGVFMLHAFKDLDISCASL 417
>gi|10092687 NIPA-like domain containing 3 [Homo sapiens]
Length = 406
Score = 107 bits (267), Expect = 1e-23
Identities = 71/289 (24%), Positives = 138/289 (47%), Gaps = 13/289 (4%)
Query: 30 LGLGVAVVSSLVNGSTFVLQKKGIVR--AKRRGTSYLTDIVWWAGTIAMAVGQIGNFLAY 87
+G +A+ LV LQK +R + +Y WW G M +G++G F +Y
Sbjct: 35 IGALLAIFGHLVVSIALNLQKYCHIRLAGSKDPRAYFKTKTWWLGLFLMLLGELGVFASY 94
Query: 88 TAVPTVLVTPLGALGVPFGSILASYLLKEKLN--------ILGKLGCLLSCAGSVVLIIH 139
P L+ PL A+ V +I+ +KEK +L +GC L+ G+ +L+
Sbjct: 95 AFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKDFLRRYVLSFVGCGLAVVGTYLLVTF 154
Query: 140 SPKSESVTTQAELEEKLTNPVFVGYLCIVLLMLLLLIFWIAPAHGPTNIMVYISICSLLG 199
+P S T + L + F+ Y+ + +++ LL+++ + NI+V + + +LLG
Sbjct: 155 APNSHEKMTGENVTRHLVSWPFLLYMLVEIILFCLLLYFYKEKNA-NNIVVILLLVALLG 213
Query: 200 SFTVPSTKGIGLAAQDILHNNPSSQRALCLCLVLLAVLGCSIIVQFRYINKALECFDSSV 259
S TV + K + A +L + Q + V+ + + + Q ++++A + +DSS+
Sbjct: 214 SMTVVTVKAV--AGMLVLSIQGNLQLDYPIFYVMFVCMVATAVYQAAFLSQASQMYDSSL 271
Query: 260 FGAIYYVVFTTLVLLASAILFREWSNVGLVDFLGMACGFTTVSVGIVLI 308
++ Y++ TT+ + A AI + ++ ++ A G +G+ LI
Sbjct: 272 IASVGYILSTTIAITAGAIFYLDFIGEDVLHICMFALGCLIAFLGVFLI 320
>gi|13376097 NIPA-like domain containing 2 [Homo sapiens]
Length = 368
Score = 102 bits (255), Expect = 4e-22
Identities = 59/256 (23%), Positives = 133/256 (51%), Gaps = 7/256 (2%)
Query: 31 GLGVAVVSSLVNGSTFVLQKKGIVRAKRRG--TSYLTDIVWWAGTIAMAVGQIGNFLAYT 88
G+ +A++ +LV + +QK ++ ++ Y ++WW G + MAVG+ GNF AY
Sbjct: 50 GVLLAILGNLVISISLNIQKYSHLQLAQQEHPRPYFKSVLWWGGVLLMAVGETGNFAAYG 109
Query: 89 AVPTVLVTPLGALGVPFGSILASYLLKEKLNILGKLGCLLSCAGSVVLIIHSPKSESVTT 148
P L+ PLG + V +I++ LK+ L LG L+ AG+ +L+ +P +
Sbjct: 110 FAPITLIAPLGCVSVTGSAIISVTFLKDNLRASDLLGTTLAFAGTYLLVNFAPNITQAIS 169
Query: 149 QAELEEKLTNPVFVGYLCIVLLMLLLLIFWIAPAHGPTNIMVYISICSLLGSFTVPSTKG 208
++ L F+ Y+ + +L+ +L+++ G ++++ +++ ++L S TV S K
Sbjct: 170 ARTVQYYLVGWQFLIYVILEILIFCILLYFY-KRKGMKHMVILLTLVAILASLTVISVKA 228
Query: 209 I-GLAAQDILHNNPSSQRALCLCLVLLAVLGCSIIVQFRYINKALECFDSSVFGAIYYVV 267
+ G+ ++ Q + ++ ++ S + Q +++N+A + ++++ + ++
Sbjct: 229 VSGMITFSVM---DKMQLTYPIFYIMFIIMIASCVFQVKFLNQATKLYNTTTVVPVNHIF 285
Query: 268 FTTLVLLASAILFREW 283
FT ++A I ++E+
Sbjct: 286 FTISAIIAGIIFYQEF 301
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 37.0 bits (84), Expect = 0.024
Identities = 22/39 (56%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 2 GTAAAAAAAAAAAAAGEGARS-PSPAAVSLGLGVAVVSS 39
G AAAAAAAAAAAAAG G P PAA + G +V ++
Sbjct: 37 GAAAAAAAAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAA 75
Score = 31.6 bits (70), Expect = 1.0
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 4 AAAAAAAAAAAAAGEGARSPSPAAVSLGLGVAVVSS 39
AAAAAAAAAA A G G P+ AA VA ++
Sbjct: 42 AAAAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAAAA 77
Score = 31.2 bits (69), Expect = 1.3
Identities = 16/23 (69%), Positives = 17/23 (73%)
Query: 4 AAAAAAAAAAAAAGEGARSPSPA 26
AAAAAAAAAAAAA + P PA
Sbjct: 120 AAAAAAAAAAAAAASSSGGPGPA 142
Score = 28.5 bits (62), Expect = 8.6
Identities = 16/22 (72%), Positives = 17/22 (77%)
Query: 3 TAAAAAAAAAAAAAGEGARSPS 24
+AAAAAAAAAAAAA A S S
Sbjct: 115 SAAAAAAAAAAAAAAAAAASSS 136
Score = 28.5 bits (62), Expect = 8.6
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 4 AAAAAAAAAAAAAGEGARSPSPAA 27
AAAAAAAAAAAA+ G P+ A
Sbjct: 122 AAAAAAAAAAAASSSGGPGPAGPA 145
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 36.2 bits (82), Expect = 0.041
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 1 MGTAAAAAAAAAAAAAGEGARSPSPAAV-----SLGLGVAVVSSLVNGSTFVLQKKGIVR 55
+G AAAAAAAA AAAA + + SPSP A S G G A +++ G L + +
Sbjct: 372 LGPAAAAAAAAQAAAAAQASPSPSPVAAPPAPGSSGGGCAAQAAV--GPAAALTRSLVAA 429
Query: 56 AKRRGTSYLTDIVWWAGTIAMAVGQIGNFLA 86
A +S + A+ + NF A
Sbjct: 430 AAAAASSVSSSAALGTLHQGTALSSVENFTA 460
>gi|12751477 forkhead box L2 [Homo sapiens]
Length = 376
Score = 34.7 bits (78), Expect = 0.12
Identities = 20/28 (71%), Positives = 20/28 (71%)
Query: 5 AAAAAAAAAAAAGEGARSPSPAAVSLGL 32
AAAAAAAAAAAA G SP AAV GL
Sbjct: 221 AAAAAAAAAAAAAAGPGSPGAAAVVKGL 248
>gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo
sapiens]
Length = 493
Score = 33.9 bits (76), Expect = 0.20
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 4 AAAAAAAAAAAAAGEGARSPSPAAVS 29
+AAAAAAAAAAAA A P+PAA S
Sbjct: 95 SAAAAAAAAAAAAAVAAAPPAPAAAS 120
>gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo
sapiens]
Length = 477
Score = 33.9 bits (76), Expect = 0.20
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 4 AAAAAAAAAAAAAGEGARSPSPAAVS 29
+AAAAAAAAAAAA A P+PAA S
Sbjct: 95 SAAAAAAAAAAAAAVAAAPPAPAAAS 120
Score = 28.9 bits (63), Expect = 6.6
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 4 AAAAAAAAAAAAAGEGARSPSPAAVSLGLGVAVVS 38
AAAAAAAAAAAAA A + ++S GV V S
Sbjct: 435 AAAAAAAAAAAAAAVAAPPTAVGSLSGAEGVPVSS 469
>gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens]
Length = 525
Score = 33.5 bits (75), Expect = 0.27
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 2 GTAAAAAAAAAAAAAGEGARSPSP 25
G AAAAAAAAAAAAA G P+P
Sbjct: 39 GNAAAAAAAAAAAAAAPGPTPPAP 62
>gi|4504779 integrin, beta 8 precursor [Homo sapiens]
Length = 769
Score = 33.5 bits (75), Expect = 0.27
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 217 LHNNPSSQRALCLCLVLLAVLGCSIIVQFRYINKALECFDSSVFGAIYYVVF--TTLVLL 274
LH + SQ L C C+++ Q Y+++ ECF S + I++++F T L+ L
Sbjct: 644 LHPHNLSQAILDQCKT-----SCALMEQQHYVDQTSECFSSPSYLRIFFIIFIVTFLIGL 698
Query: 275 ASAILFRE 282
++ R+
Sbjct: 699 LKVLIIRQ 706
>gi|71979932 solute carrier family 7 (cationic amino acid
transporter, y+ system), member 5 [Homo sapiens]
Length = 507
Score = 33.1 bits (74), Expect = 0.35
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 6 AAAAAAAAAAAGEGARSPSPAAVSLGLGVAVVSSLVNGSTFVLQKKGIVRAKRRGTSYLT 65
AA +A +A AGEG ++L GVA++ + GS + G++ K G+ L
Sbjct: 28 AAKSADGSAPAGEGEGVTLQRNITLLNGVAIIVGTIIGSGIFVTPTGVL--KEAGSPGLA 85
Query: 66 DIVWWAGTIAMAVGQI 81
+VW A + VG +
Sbjct: 86 LVVWAACGVFSIVGAL 101
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 33.1 bits (74), Expect = 0.35
Identities = 20/39 (51%), Positives = 23/39 (58%)
Query: 2 GTAAAAAAAAAAAAAGEGARSPSPAAVSLGLGVAVVSSL 40
G AAAAAAAAAAAAAG A P G G+ ++L
Sbjct: 120 GAAAAAAAAAAAAAAGGLALGLHPGGAQGGAGLPAQAAL 158
>gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]
Length = 1215
Score = 33.1 bits (74), Expect = 0.35
Identities = 19/30 (63%), Positives = 20/30 (66%)
Query: 4 AAAAAAAAAAAAAGEGARSPSPAAVSLGLG 33
AAAAAAAAAAAAA GA +PS A G
Sbjct: 170 AAAAAAAAAAAAAAAGAGAPSVGAAGAADG 199
Score = 30.0 bits (66), Expect = 3.0
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 3 TAAAAAAAAAAAAAGEGARSPSPAAVSLG 31
T+AAAAAAAAAAAA A + +P+ + G
Sbjct: 167 TSAAAAAAAAAAAAAAAAGAGAPSVGAAG 195
>gi|5031613 growth differentiation factor 11 precursor [Homo
sapiens]
Length = 407
Score = 32.7 bits (73), Expect = 0.46
Identities = 20/26 (76%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 2 GTAAAAAAAAAAAAAGEGA-RSPSPA 26
G AAAAAAAAAAAAAG G RS PA
Sbjct: 27 GPAAAAAAAAAAAAAGVGGERSSRPA 52
Score = 29.3 bits (64), Expect = 5.0
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 4 AAAAAAAAAAAAAGEGARSPSPA 26
AAAAAAAAAA GE + P+P+
Sbjct: 32 AAAAAAAAAAGVGGERSSRPAPS 54
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 32.0 bits (71), Expect = 0.78
Identities = 17/27 (62%), Positives = 18/27 (66%)
Query: 1 MGTAAAAAAAAAAAAAGEGARSPSPAA 27
+ A AAAAAAAAAAAG GA P A
Sbjct: 469 VAAAVAAAAAAAAAAAGSGAPEPLDGA 495
>gi|125625322 RALBP1 associated Eps domain containing 2 isoform 2
[Homo sapiens]
Length = 659
Score = 32.0 bits (71), Expect = 0.78
Identities = 20/29 (68%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 4 AAAAAAAAAAAAAGEGARS-PSPAAVSLG 31
AAAAAAAAAAAAAG G S P P +S G
Sbjct: 5 AAAAAAAAAAAAAGGGCGSGPPPLLLSEG 33
Score = 30.0 bits (66), Expect = 3.0
Identities = 18/33 (54%), Positives = 19/33 (57%)
Query: 1 MGTAAAAAAAAAAAAAGEGARSPSPAAVSLGLG 33
M AAAAAAAAAAAAA G P + L G
Sbjct: 1 MEAAAAAAAAAAAAAAAGGGCGSGPPPLLLSEG 33
>gi|125625326 RALBP1 associated Eps domain containing 2 isoform 1
[Homo sapiens]
Length = 660
Score = 32.0 bits (71), Expect = 0.78
Identities = 20/29 (68%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 4 AAAAAAAAAAAAAGEGARS-PSPAAVSLG 31
AAAAAAAAAAAAAG G S P P +S G
Sbjct: 5 AAAAAAAAAAAAAGGGCGSGPPPLLLSEG 33
Score = 30.0 bits (66), Expect = 3.0
Identities = 18/33 (54%), Positives = 19/33 (57%)
Query: 1 MGTAAAAAAAAAAAAAGEGARSPSPAAVSLGLG 33
M AAAAAAAAAAAAA G P + L G
Sbjct: 1 MEAAAAAAAAAAAAAAAGGGCGSGPPPLLLSEG 33
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 31.6 bits (70), Expect = 1.0
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 5 AAAAAAAAAAAAGEGARSPSPA 26
AAAAAAAAAAAA A +P+PA
Sbjct: 500 AAAAAAAAAAAAAAAAAAPAPA 521
Score = 30.8 bits (68), Expect = 1.7
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 4 AAAAAAAAAAAAAGEGARSPSPAAVS 29
AAAAAAAAAAAAA A +P+ AA +
Sbjct: 501 AAAAAAAAAAAAAAAAAPAPALAAAA 526
Score = 28.9 bits (63), Expect = 6.6
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 1 MGTAAAAAAAAAAAAAGEGARSPSPAAVSLGLGVAVVSSL 40
+ AAAAAAAAAAAAA AA + L A +L
Sbjct: 499 IAAAAAAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPAL 538
Score = 28.5 bits (62), Expect = 8.6
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 4 AAAAAAAAAAAAAGEGARSPSPAAVSLGLGVAVVSSL 40
+AAAA AAAAAAA A + + AA + L A +L
Sbjct: 494 SAAAAIAAAAAAAAAAAAAAAAAAPAPALAAAAAPAL 530
>gi|170763515 DMRT-like family A1 [Homo sapiens]
Length = 504
Score = 31.6 bits (70), Expect = 1.0
Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 4 AAAAAAAAAAAAAGEGARSPSPAAVSLGLG 33
AAAAAAAAAAA +G G P+P S G+G
Sbjct: 57 AAAAAAAAAAATSGSGGCPPAPGLES-GVG 85
>gi|30795196 LIM homeobox protein 2 [Homo sapiens]
Length = 406
Score = 31.2 bits (69), Expect = 1.3
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 4 AAAAAAAAAAAAAGEGARSPSPAAVSLGLGVAVV 37
AAAAAAAAAA +AG GA +P + GV V
Sbjct: 187 AAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTV 220
>gi|133922582 zinc finger protein 358 [Homo sapiens]
Length = 568
Score = 30.8 bits (68), Expect = 1.7
Identities = 26/47 (55%), Positives = 27/47 (57%), Gaps = 8/47 (17%)
Query: 4 AAAAAAAAAAAAAGEG-------ARSPSPAAVSLGLGVAVVSSLVNG 43
AAAAAAAAAAAAAG G A P VSL LG VS L +G
Sbjct: 404 AAAAAAAAAAAAAGLGLGPGLSPASMMRPGQVSL-LGPDAVSVLGSG 449
Score = 30.4 bits (67), Expect = 2.3
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 2 GTAAAAAAAAAAAAAGEGARSPSPAAVSLGLGVAVVSSLVNGSTFVL 48
G AAAAAAAAAAAAA + A + LG G++ S + G +L
Sbjct: 399 GAAAAAAAAAAAAAA-------AAAGLGLGPGLSPASMMRPGQVSLL 438
>gi|4506975 solute carrier family 12 (sodium/potassium/chloride
transporters), member 2 [Homo sapiens]
Length = 1212
Score = 30.4 bits (67), Expect = 2.3
Identities = 16/17 (94%), Positives = 16/17 (94%)
Query: 4 AAAAAAAAAAAAAGEGA 20
AAAAAAAAAAAAAG GA
Sbjct: 95 AAAAAAAAAAAAAGAGA 111
Score = 30.0 bits (66), Expect = 3.0
Identities = 16/19 (84%), Positives = 16/19 (84%)
Query: 2 GTAAAAAAAAAAAAAGEGA 20
G AAAAAAAAAAAAA GA
Sbjct: 91 GRAAAAAAAAAAAAAAAGA 109
Score = 29.6 bits (65), Expect = 3.9
Identities = 15/18 (83%), Positives = 16/18 (88%)
Query: 4 AAAAAAAAAAAAAGEGAR 21
AAAAAAAAAAA AG GA+
Sbjct: 97 AAAAAAAAAAAGAGAGAK 114
>gi|5032179 tripartite motif-containing 28 protein [Homo sapiens]
Length = 835
Score = 30.4 bits (67), Expect = 2.3
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
Query: 1 MGTAAAAAAAAAAAAA------GEGA-----RSPSPAAVSLGLGVAVVSSLVNGSTFVLQ 49
M +AAAA+AAAA+AA GEG+ RS +P+A + A SS G L+
Sbjct: 1 MAASAAAASAAAASAASGSPGPGEGSAGGEKRSTAPSAAASASASAAASSPAGGGAEALE 60
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.138 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,991,873
Number of Sequences: 37866
Number of extensions: 456745
Number of successful extensions: 5554
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4725
Number of HSP's gapped (non-prelim): 472
length of query: 329
length of database: 18,247,518
effective HSP length: 103
effective length of query: 226
effective length of database: 14,347,320
effective search space: 3242494320
effective search space used: 3242494320
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.