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Search of human proteins with 41282056
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|41282056 pyrin and HIN domain family, member 1 beta 1
isoform [Homo sapiens]
(461 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|41282056 pyrin and HIN domain family, member 1 beta 1 isoform... 910 0.0
gi|39540514 pyrin and HIN domain family, member 1 alpha 1 isofor... 895 0.0
gi|41282051 pyrin and HIN domain family, member 1 beta 2 isoform... 886 0.0
gi|41282048 pyrin and HIN domain family, member 1 alpha 2 isofor... 870 0.0
gi|112789562 interferon, gamma-inducible protein 16 [Homo sapiens] 587 e-167
gi|4505227 myeloid cell nuclear differentiation antigen [Homo sa... 399 e-111
gi|4757734 absent in melanoma 2 [Homo sapiens] 169 6e-42
gi|169161845 PREDICTED: similar to hCG2041495 [Homo sapiens] 151 1e-36
gi|169162310 PREDICTED: similar to hCG2041495 [Homo sapiens] 150 3e-36
gi|169162679 PREDICTED: hypothetical protein LOC646377 [Homo sap... 150 3e-36
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 44 3e-04
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 43 5e-04
gi|197276602 microtubule-associated protein 4 isoform 5 [Homo sa... 41 0.003
gi|197276600 microtubule-associated protein 4 isoform 4 [Homo sa... 41 0.003
gi|47519675 microtubule-associated protein 4 isoform 2 [Homo sap... 41 0.003
gi|47519639 microtubule-associated protein 4 isoform 1 [Homo sap... 41 0.003
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens] 40 0.006
gi|6912458 calcineurin binding protein 1 [Homo sapiens] 38 0.017
gi|239740773 PREDICTED: similar to diffuse panbronchiolitis crit... 37 0.029
gi|28559039 mediator complex subunit 1 [Homo sapiens] 37 0.029
gi|238624188 diffuse panbronchiolitis critical region 1 protein ... 37 0.038
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 37 0.049
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 37 0.049
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 37 0.049
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 37 0.049
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ... 37 0.049
gi|71979937 sialophorin [Homo sapiens] 37 0.049
gi|4507181 sialophorin [Homo sapiens] 37 0.049
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens] 36 0.064
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens] 36 0.064
>gi|41282056 pyrin and HIN domain family, member 1 beta 1 isoform
[Homo sapiens]
Length = 461
Score = 910 bits (2352), Expect = 0.0
Identities = 461/461 (100%), Positives = 461/461 (100%)
Query: 1 MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60
MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA
Sbjct: 1 MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60
Query: 61 GLGKLIEFFKEIPTLGDLAETLKREKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACT 120
GLGKLIEFFKEIPTLGDLAETLKREKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACT
Sbjct: 61 GLGKLIEFFKEIPTLGDLAETLKREKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACT 120
Query: 121 PSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQ 180
PSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQ
Sbjct: 121 PSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQ 180
Query: 181 TSSSAPPNTSSTESLKPLANRHATASKNIFREDPIIAMVLNATKVFKYESSENEQRRMFH 240
TSSSAPPNTSSTESLKPLANRHATASKNIFREDPIIAMVLNATKVFKYESSENEQRRMFH
Sbjct: 181 TSSSAPPNTSSTESLKPLANRHATASKNIFREDPIIAMVLNATKVFKYESSENEQRRMFH 240
Query: 241 ATVATQTQFFHVKVLNINLKRKFIKKRIIIISNYSKRNSLLEVNEASSVSEAGPDQTFEV 300
ATVATQTQFFHVKVLNINLKRKFIKKRIIIISNYSKRNSLLEVNEASSVSEAGPDQTFEV
Sbjct: 241 ATVATQTQFFHVKVLNINLKRKFIKKRIIIISNYSKRNSLLEVNEASSVSEAGPDQTFEV 300
Query: 301 PKDIIRRAKKIPKINILHKQTSGYIVYGLFMLHTKIVNRKTTIYEIQDKTGSMAVVGKGE 360
PKDIIRRAKKIPKINILHKQTSGYIVYGLFMLHTKIVNRKTTIYEIQDKTGSMAVVGKGE
Sbjct: 301 PKDIIRRAKKIPKINILHKQTSGYIVYGLFMLHTKIVNRKTTIYEIQDKTGSMAVVGKGE 360
Query: 361 CHNIPCEKGDKLRLFCFRLRKRENMSKLMSEMHSFIQIQKNTNQRSHDSRSMALPQEQSQ 420
CHNIPCEKGDKLRLFCFRLRKRENMSKLMSEMHSFIQIQKNTNQRSHDSRSMALPQEQSQ
Sbjct: 361 CHNIPCEKGDKLRLFCFRLRKRENMSKLMSEMHSFIQIQKNTNQRSHDSRSMALPQEQSQ 420
Query: 421 HPKPSEASTTLPESHLKTPQMPPTTPSSSSFTKVTKDKDIK 461
HPKPSEASTTLPESHLKTPQMPPTTPSSSSFTKVTKDKDIK
Sbjct: 421 HPKPSEASTTLPESHLKTPQMPPTTPSSSSFTKVTKDKDIK 461
>gi|39540514 pyrin and HIN domain family, member 1 alpha 1 isoform
[Homo sapiens]
Length = 492
Score = 895 bits (2312), Expect = 0.0
Identities = 453/453 (100%), Positives = 453/453 (100%)
Query: 1 MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60
MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA
Sbjct: 1 MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60
Query: 61 GLGKLIEFFKEIPTLGDLAETLKREKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACT 120
GLGKLIEFFKEIPTLGDLAETLKREKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACT
Sbjct: 61 GLGKLIEFFKEIPTLGDLAETLKREKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACT 120
Query: 121 PSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQ 180
PSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQ
Sbjct: 121 PSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQ 180
Query: 181 TSSSAPPNTSSTESLKPLANRHATASKNIFREDPIIAMVLNATKVFKYESSENEQRRMFH 240
TSSSAPPNTSSTESLKPLANRHATASKNIFREDPIIAMVLNATKVFKYESSENEQRRMFH
Sbjct: 181 TSSSAPPNTSSTESLKPLANRHATASKNIFREDPIIAMVLNATKVFKYESSENEQRRMFH 240
Query: 241 ATVATQTQFFHVKVLNINLKRKFIKKRIIIISNYSKRNSLLEVNEASSVSEAGPDQTFEV 300
ATVATQTQFFHVKVLNINLKRKFIKKRIIIISNYSKRNSLLEVNEASSVSEAGPDQTFEV
Sbjct: 241 ATVATQTQFFHVKVLNINLKRKFIKKRIIIISNYSKRNSLLEVNEASSVSEAGPDQTFEV 300
Query: 301 PKDIIRRAKKIPKINILHKQTSGYIVYGLFMLHTKIVNRKTTIYEIQDKTGSMAVVGKGE 360
PKDIIRRAKKIPKINILHKQTSGYIVYGLFMLHTKIVNRKTTIYEIQDKTGSMAVVGKGE
Sbjct: 301 PKDIIRRAKKIPKINILHKQTSGYIVYGLFMLHTKIVNRKTTIYEIQDKTGSMAVVGKGE 360
Query: 361 CHNIPCEKGDKLRLFCFRLRKRENMSKLMSEMHSFIQIQKNTNQRSHDSRSMALPQEQSQ 420
CHNIPCEKGDKLRLFCFRLRKRENMSKLMSEMHSFIQIQKNTNQRSHDSRSMALPQEQSQ
Sbjct: 361 CHNIPCEKGDKLRLFCFRLRKRENMSKLMSEMHSFIQIQKNTNQRSHDSRSMALPQEQSQ 420
Query: 421 HPKPSEASTTLPESHLKTPQMPPTTPSSSSFTK 453
HPKPSEASTTLPESHLKTPQMPPTTPSSSSFTK
Sbjct: 421 HPKPSEASTTLPESHLKTPQMPPTTPSSSSFTK 453
>gi|41282051 pyrin and HIN domain family, member 1 beta 2 isoform
[Homo sapiens]
Length = 452
Score = 886 bits (2289), Expect = 0.0
Identities = 452/461 (98%), Positives = 452/461 (98%), Gaps = 9/461 (1%)
Query: 1 MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60
MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA
Sbjct: 1 MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60
Query: 61 GLGKLIEFFKEIPTLGDLAETLKREKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACT 120
GLGKLIEFFKEIPTLGDLAETLKREKLKV KGIIPSKKTKQKEVYPATPACT
Sbjct: 61 GLGKLIEFFKEIPTLGDLAETLKREKLKV---------KGIIPSKKTKQKEVYPATPACT 111
Query: 121 PSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQ 180
PSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQ
Sbjct: 112 PSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQ 171
Query: 181 TSSSAPPNTSSTESLKPLANRHATASKNIFREDPIIAMVLNATKVFKYESSENEQRRMFH 240
TSSSAPPNTSSTESLKPLANRHATASKNIFREDPIIAMVLNATKVFKYESSENEQRRMFH
Sbjct: 172 TSSSAPPNTSSTESLKPLANRHATASKNIFREDPIIAMVLNATKVFKYESSENEQRRMFH 231
Query: 241 ATVATQTQFFHVKVLNINLKRKFIKKRIIIISNYSKRNSLLEVNEASSVSEAGPDQTFEV 300
ATVATQTQFFHVKVLNINLKRKFIKKRIIIISNYSKRNSLLEVNEASSVSEAGPDQTFEV
Sbjct: 232 ATVATQTQFFHVKVLNINLKRKFIKKRIIIISNYSKRNSLLEVNEASSVSEAGPDQTFEV 291
Query: 301 PKDIIRRAKKIPKINILHKQTSGYIVYGLFMLHTKIVNRKTTIYEIQDKTGSMAVVGKGE 360
PKDIIRRAKKIPKINILHKQTSGYIVYGLFMLHTKIVNRKTTIYEIQDKTGSMAVVGKGE
Sbjct: 292 PKDIIRRAKKIPKINILHKQTSGYIVYGLFMLHTKIVNRKTTIYEIQDKTGSMAVVGKGE 351
Query: 361 CHNIPCEKGDKLRLFCFRLRKRENMSKLMSEMHSFIQIQKNTNQRSHDSRSMALPQEQSQ 420
CHNIPCEKGDKLRLFCFRLRKRENMSKLMSEMHSFIQIQKNTNQRSHDSRSMALPQEQSQ
Sbjct: 352 CHNIPCEKGDKLRLFCFRLRKRENMSKLMSEMHSFIQIQKNTNQRSHDSRSMALPQEQSQ 411
Query: 421 HPKPSEASTTLPESHLKTPQMPPTTPSSSSFTKVTKDKDIK 461
HPKPSEASTTLPESHLKTPQMPPTTPSSSSFTKVTKDKDIK
Sbjct: 412 HPKPSEASTTLPESHLKTPQMPPTTPSSSSFTKVTKDKDIK 452
>gi|41282048 pyrin and HIN domain family, member 1 alpha 2 isoform
[Homo sapiens]
Length = 483
Score = 870 bits (2249), Expect = 0.0
Identities = 444/453 (98%), Positives = 444/453 (98%), Gaps = 9/453 (1%)
Query: 1 MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60
MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA
Sbjct: 1 MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60
Query: 61 GLGKLIEFFKEIPTLGDLAETLKREKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACT 120
GLGKLIEFFKEIPTLGDLAETLKREKLKV KGIIPSKKTKQKEVYPATPACT
Sbjct: 61 GLGKLIEFFKEIPTLGDLAETLKREKLKV---------KGIIPSKKTKQKEVYPATPACT 111
Query: 121 PSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQ 180
PSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQ
Sbjct: 112 PSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQ 171
Query: 181 TSSSAPPNTSSTESLKPLANRHATASKNIFREDPIIAMVLNATKVFKYESSENEQRRMFH 240
TSSSAPPNTSSTESLKPLANRHATASKNIFREDPIIAMVLNATKVFKYESSENEQRRMFH
Sbjct: 172 TSSSAPPNTSSTESLKPLANRHATASKNIFREDPIIAMVLNATKVFKYESSENEQRRMFH 231
Query: 241 ATVATQTQFFHVKVLNINLKRKFIKKRIIIISNYSKRNSLLEVNEASSVSEAGPDQTFEV 300
ATVATQTQFFHVKVLNINLKRKFIKKRIIIISNYSKRNSLLEVNEASSVSEAGPDQTFEV
Sbjct: 232 ATVATQTQFFHVKVLNINLKRKFIKKRIIIISNYSKRNSLLEVNEASSVSEAGPDQTFEV 291
Query: 301 PKDIIRRAKKIPKINILHKQTSGYIVYGLFMLHTKIVNRKTTIYEIQDKTGSMAVVGKGE 360
PKDIIRRAKKIPKINILHKQTSGYIVYGLFMLHTKIVNRKTTIYEIQDKTGSMAVVGKGE
Sbjct: 292 PKDIIRRAKKIPKINILHKQTSGYIVYGLFMLHTKIVNRKTTIYEIQDKTGSMAVVGKGE 351
Query: 361 CHNIPCEKGDKLRLFCFRLRKRENMSKLMSEMHSFIQIQKNTNQRSHDSRSMALPQEQSQ 420
CHNIPCEKGDKLRLFCFRLRKRENMSKLMSEMHSFIQIQKNTNQRSHDSRSMALPQEQSQ
Sbjct: 352 CHNIPCEKGDKLRLFCFRLRKRENMSKLMSEMHSFIQIQKNTNQRSHDSRSMALPQEQSQ 411
Query: 421 HPKPSEASTTLPESHLKTPQMPPTTPSSSSFTK 453
HPKPSEASTTLPESHLKTPQMPPTTPSSSSFTK
Sbjct: 412 HPKPSEASTTLPESHLKTPQMPPTTPSSSSFTK 444
>gi|112789562 interferon, gamma-inducible protein 16 [Homo sapiens]
Length = 729
Score = 587 bits (1512), Expect = e-167
Identities = 308/457 (67%), Positives = 363/457 (79%), Gaps = 10/457 (2%)
Query: 1 MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60
M YK IVLLKGLEVINDYHFR+VKSLLSNDLKLN KM+EEYDKIQIADLMEEKF GDA
Sbjct: 1 MGKKYKNIVLLKGLEVINDYHFRMVKSLLSNDLKLNLKMREEYDKIQIADLMEEKFRGDA 60
Query: 61 GLGKLIEFFKEIPTLGDLAETLKREKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACT 120
GLGKLI+ F++IPTL DLAETLK+EKLKV KG S+K K KEV +PA +
Sbjct: 61 GLGKLIKIFEDIPTLEDLAETLKKEKLKV---------KGPALSRKRK-KEVDATSPAPS 110
Query: 121 PSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQ 180
S+ + +GAE T G QKRKK ++E+ G K SK+S+EQT+P AGA STAMGRSP P+
Sbjct: 111 TSSTVKTEGAEATPGAQKRKKSTKEKAGPKGSKVSEEQTQPPSPAGAGMSTAMGRSPSPK 170
Query: 181 TSSSAPPNTSSTESLKPLANRHATASKNIFREDPIIAMVLNATKVFKYESSENEQRRMFH 240
TS SAPPN+SSTE+ K +A T +N+ ++ P+I VL+ TK F+YE+ E E++ MFH
Sbjct: 171 TSLSAPPNSSSTENPKTVAKCQVTPRRNVLQKRPVIVKVLSTTKPFEYETPEMEKKIMFH 230
Query: 241 ATVATQTQFFHVKVLNINLKRKFIKKRIIIISNYSKRNSLLEVNEASSVSEAGPDQTFEV 300
ATVATQTQFFHVKVLN +LK KF K+IIIIS+Y + +SLLEVNE S+VSEAGP+QTFEV
Sbjct: 231 ATVATQTQFFHVKVLNTSLKEKFNGKKIIIISDYLEYDSLLEVNEESTVSEAGPNQTFEV 290
Query: 301 PKDIIRRAKKIPKINILHKQTSGYIVYGLFMLHTKIVNRKTTIYEIQDKTGSMAVVGKGE 360
P II RAK+ KI+ILHKQ SG IVYG+FMLH K VN+KTTIYEIQD G M VVG G+
Sbjct: 291 PNKIINRAKETLKIDILHKQASGNIVYGVFMLHKKTVNQKTTIYEIQDDRGKMDVVGTGQ 350
Query: 361 CHNIPCEKGDKLRLFCFRLRKRENMSKLMSEMHSFIQIQKNTNQRSHDSRSMALPQEQSQ 420
CHNIPCE+GDKL+LFCFRLRK+ MSKL+SEMHSFIQI+K TN R++D +SM LPQEQ Q
Sbjct: 351 CHNIPCEEGDKLQLFCFRLRKKNQMSKLISEMHSFIQIKKKTNPRNNDPKSMKLPQEQRQ 410
Query: 421 HPKPSEASTTLPESHLKTPQMPPTTPSSSSFTKVTKD 457
P PSEASTT PESHL+TPQMPPTTPSSS FTK ++D
Sbjct: 411 LPYPSEASTTFPESHLRTPQMPPTTPSSSFFTKKSED 447
Score = 177 bits (449), Expect = 2e-44
Identities = 118/298 (39%), Positives = 154/298 (51%), Gaps = 21/298 (7%)
Query: 114 PATPACTPSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAM 173
P P TPS+ K +E+T+ R ++ KE + S A
Sbjct: 429 PQMPPTTPSSSFFTKKSEDTISKMN---------DFMRMQILKEGSHFPGPFMTSIGPAE 479
Query: 174 GRSPPPQTSSSAPPNTSSTESLKPLANRHATASKNIFREDPIIA-----MVLNATKVFKY 228
PQ PP+T S+ L L R T + + ED + MVLNAT+ F Y
Sbjct: 480 SHPHTPQM----PPSTPSSSFLTTLKPRLKTEPEEVSIEDSAQSDLKEVMVLNATESFVY 535
Query: 229 ESSENEQRRMFHATVATQTQFFHVKVLNINLKRKFIKKRIIIISNYSKRNSLLEVNEASS 288
E E Q++MFHATVAT+ + F VKV NI+LK KF K+II I+NY RN LEV +
Sbjct: 536 EPKE--QKKMFHATVATENEVFRVKVFNIDLKEKFTPKKIIAIANYVCRNGFLEVYPFTL 593
Query: 289 VSEAGPDQTFEVPKDIIRRAKKIPKINILHKQTSGYIVYGLFMLHTKIVNRKTTIYEIQD 348
V++ D+ E+PK +IR A PKIN L QT G V G+F +H K V + T YEIQD
Sbjct: 594 VADVNADRNMEIPKGLIRSASVTPKINQLCSQTKGSFVNGVFEVHKKNVRGEFTYYEIQD 653
Query: 349 KTGSMAVVGKGECHNIPCEKGDKLRLFCFRLR-KRENMSKLMSEMHSFIQIQKNTNQR 405
TG M VV G I CE+GDKL+L CF L K N +L S +HS I++ K +
Sbjct: 654 NTGKMEVVVHGRLTTINCEEGDKLKLTCFELAPKSGNTGELRSVIHSHIKVIKTRKNK 711
>gi|4505227 myeloid cell nuclear differentiation antigen [Homo
sapiens]
Length = 407
Score = 399 bits (1024), Expect = e-111
Identities = 214/400 (53%), Positives = 282/400 (70%), Gaps = 5/400 (1%)
Query: 1 MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60
M N YKKI+LLKG E+++DYHF +KSLL+ DL L KM+EEY++I+I DLME+KF G A
Sbjct: 1 MVNEYKKILLLKGFELMDDYHFTSIKSLLAYDLGLTTKMQEEYNRIKITDLMEKKFQGVA 60
Query: 61 GLGKLIEFFKEIPTLGDLAETLKREKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACT 120
L KLIE K++P+L +L L++EK KVA KI++ + P KK Q+EV A PA T
Sbjct: 61 CLDKLIELAKDMPSLKNLVNNLRKEKSKVAKKIKT---QEKAPVKKINQEEVGLAAPAPT 117
Query: 121 PSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQ 180
N+LT++ QKRK P++E+T KR+K+S+EQ++P +GASTS A+ P PQ
Sbjct: 118 ARNKLTSEARGRIPVAQKRKTPNKEKTEAKRNKVSQEQSKPPGPSGASTSAAVDHPPLPQ 177
Query: 181 TSSSAPPNTSSTESLKPLANRHATASKNIFREDPIIAMVLNATKVFKYESSENEQRRMFH 240
TSSS P NTS T + + A R A +N+ + DP+ +VL AT FKYES EN + MFH
Sbjct: 178 TSSSTPSNTSFTPNQETQAQRQVDARRNVPQNDPVTVVVLKATAPFKYESPENGKSTMFH 237
Query: 241 ATVATQTQFFHVKVLNINLKRKFIKKRIIIISNYSKRNSLLEVNEASSVSEAGPDQTFEV 300
ATVA++TQ+FHVKV +INLK KF++K++I IS+YS+ ++E+ EASSVS+ +Q FEV
Sbjct: 238 ATVASKTQYFHVKVFDINLKEKFVRKKVITISDYSECKGVMEIKEASSVSDF--NQNFEV 295
Query: 301 PKDIIRRAKKIPKINILHKQTSGYIVYGLFMLHTKIVNRKTTIYEIQDKTGSMAVVGKGE 360
P II A K PKI+ L+KQ SG +VYGLFML K V++K TIYEIQD TGSM VVG G+
Sbjct: 296 PNRIIEIANKTPKISQLYKQASGTMVYGLFMLQKKSVHKKNTIYEIQDNTGSMDVVGSGK 355
Query: 361 CHNIPCEKGDKLRLFCFRLRKRENMSKLMSEMHSFIQIQK 400
HNI CEKGDKLRLFC +LR + KL+ HSFI++ K
Sbjct: 356 WHNIKCEKGDKLRLFCLQLRTVDRKLKLVCGSHSFIKVIK 395
Score = 45.1 bits (105), Expect = 1e-04
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 386 SKLMSEMHSFIQI---QKNTNQRSHDSRSMALPQEQSQHPKPSEASTTLPESHLKTPQMP 442
+KL SE I + +K N+ +++ + QEQS+ P PS AST+ H PQ
Sbjct: 120 NKLTSEARGRIPVAQKRKTPNKEKTEAKRNKVSQEQSKPPGPSGASTSAAVDHPPLPQTS 179
Query: 443 PTTPSSSSFT 452
+TPS++SFT
Sbjct: 180 SSTPSNTSFT 189
>gi|4757734 absent in melanoma 2 [Homo sapiens]
Length = 343
Score = 169 bits (427), Expect = 6e-42
Identities = 125/400 (31%), Positives = 189/400 (47%), Gaps = 62/400 (15%)
Query: 1 MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60
M + YK+I+LL GL+ I D K LS++ + ++IQ+A LM + +
Sbjct: 1 MESKYKEILLLTGLDNITDEELDRFKFFLSDEFNIATGKLHTANRIQVATLMIQNAGAVS 60
Query: 61 GLGKLIEFFKEIPTLGDLAETLKREKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACT 120
+ K I F+++ +
Sbjct: 61 AVMKTIRIFQKLNYM--------------------------------------------- 75
Query: 121 PSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQ 180
L AK +E +K K + ++ TK +S+ + P+ SA A R+ P
Sbjct: 76 ----LLAKRLQE----EKEKVDKQYKSVTKPKPLSQAEMSPAASAAIRNDVAKQRAAPKV 127
Query: 181 TSSSAPPNTSSTESLKPLANRHATASKNIFREDPIIAMVLNATKVFKYESSENEQRRMFH 240
+ P E + +A + + + F++ + MVL A K F +E+ E +Q MFH
Sbjct: 128 SPHVKP------EQKQMVAQQESI--REGFQKRCLPVMVLKAKKPFTFETQEGKQE-MFH 178
Query: 241 ATVATQTQFFHVKVLNINLKRKFIKKRIIIISNYSKRNSLLEVNEASSVSEAGPDQTFEV 300
ATVAT+ +FF VKV N LK KFI KRIIII+ Y + + LEVN AS V +A DQ V
Sbjct: 179 ATVATEKEFFFVKVFNTLLKDKFIPKRIIIIARYYRHSGFLEVNSASRVLDAESDQKVNV 238
Query: 301 PKDIIRRAKKIPKINILHKQTSGYIVYGLFMLHTKIVNRKTTIYEIQDKTGSMAVVGKGE 360
P +IIR+A + PKIN L Q G IV GLF++ +K ++++ D TG M V+G
Sbjct: 239 PLNIIRKAGETPKINTLQTQPLGTIVNGLFVVQKVTEKKKNILFDLSDNTGKMEVLGVRN 298
Query: 361 CHNIPCEKGDKLRLFCFRLRKRENMSKLMSEMHSFIQIQK 400
+ C++GDK+RL F L K +L S +HS I++ K
Sbjct: 299 EDTMKCKEGDKVRLTFFTLSKNGEKLQLTSGVHSTIKVIK 338
>gi|169161845 PREDICTED: similar to hCG2041495 [Homo sapiens]
Length = 196
Score = 151 bits (382), Expect = 1e-36
Identities = 87/156 (55%), Positives = 100/156 (64%), Gaps = 14/156 (8%)
Query: 1 MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60
M + YK VLLKGLE INDYHF I+ SLL NDLKLN ++EYDKIQIADLMEEKFPGDA
Sbjct: 41 MVSKYKNNVLLKGLEAINDYHFSIINSLLINDLKLNSTRRDEYDKIQIADLMEEKFPGDA 100
Query: 61 GLGKLIEFFKEIPT-LGDLAETLKREK-------------LKVANKIESIPVKGIIPSKK 106
GLGKL + T GDLAETL++ K L V NKI+SIP KG SKK
Sbjct: 101 GLGKLRTLQRNTNTGRGDLAETLRKVKRSSALGLDVLLFSLLVVNKIKSIPAKGKTSSKK 160
Query: 107 TKQKEVYPATPACTPSNRLTAKGAEETLGPQKRKKP 142
KQ++V P TP T + TA+G EET Q+ P
Sbjct: 161 RKQRKVGPTTPLATTDKKFTAEGGEETPIAQRFHTP 196
>gi|169162310 PREDICTED: similar to hCG2041495 [Homo sapiens]
Length = 196
Score = 150 bits (378), Expect = 3e-36
Identities = 86/156 (55%), Positives = 99/156 (63%), Gaps = 14/156 (8%)
Query: 1 MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60
M + YK VLLKGLE INDYHF I+ SLL NDLKLN ++EYDKIQIADLMEEKFPGDA
Sbjct: 41 MVSKYKNNVLLKGLEAINDYHFSIINSLLINDLKLNSTRRDEYDKIQIADLMEEKFPGDA 100
Query: 61 GLGKLIEFFKEIPT-LGDLAETLKREK-------------LKVANKIESIPVKGIIPSKK 106
G GKL + T GDLAETL++ K L V NKI+SIP KG SKK
Sbjct: 101 GFGKLRTLQRNTNTGRGDLAETLRKVKRSSALGLDVLLFSLLVVNKIKSIPAKGKTSSKK 160
Query: 107 TKQKEVYPATPACTPSNRLTAKGAEETLGPQKRKKP 142
KQ++V P TP T + TA+G EET Q+ P
Sbjct: 161 RKQRKVGPTTPLATTDKKFTAEGGEETPIAQRFHTP 196
>gi|169162679 PREDICTED: hypothetical protein LOC646377 [Homo
sapiens]
Length = 196
Score = 150 bits (378), Expect = 3e-36
Identities = 86/156 (55%), Positives = 99/156 (63%), Gaps = 14/156 (8%)
Query: 1 MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60
M + YK VLLKGLE INDYHF I+ SLL NDLKLN ++EYDKIQIADLMEEKFPGDA
Sbjct: 41 MVSKYKNNVLLKGLEAINDYHFSIINSLLINDLKLNSTRRDEYDKIQIADLMEEKFPGDA 100
Query: 61 GLGKLIEFFKEIPT-LGDLAETLKREK-------------LKVANKIESIPVKGIIPSKK 106
G GKL + T GDLAETL++ K L V NKI+SIP KG SKK
Sbjct: 101 GFGKLRTLQRNTNTGRGDLAETLRKVKRSSALGLDVLLFSLLVVNKIKSIPAKGKTSSKK 160
Query: 107 TKQKEVYPATPACTPSNRLTAKGAEETLGPQKRKKP 142
KQ++V P TP T + TA+G EET Q+ P
Sbjct: 161 RKQRKVGPTTPLATTDKKFTAEGGEETPIAQRFHTP 196
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 43.9 bits (102), Expect = 3e-04
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 73 PTLGDLAETLKREKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACTPSNRLTAKGAEE 132
P L D+ E ++ K K K E + K ++ +KT++K++ P P P + +
Sbjct: 1019 PVLRDMKEEREQRKEKEGEKAEKVTEKVVVKPEKTEKKDLPPPPPPPQPPAPIQPQSVPP 1078
Query: 133 TLGPQKRKKPSEEETGTKRSKMSKEQTRP 161
+ P+ K PS ET T K S++ +P
Sbjct: 1079 PIQPEAEKFPS-TETATLAQKPSQDTEKP 1106
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 43.1 bits (100), Expect = 5e-04
Identities = 26/73 (35%), Positives = 32/73 (43%)
Query: 134 LGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQTSSSAPPNTSSTE 193
L P++ P+ + T K P CSA A+ ST SPPP PP
Sbjct: 1218 LQPEEADVPAYPKVATVPQSEKKPSKYPLCSADAAVSTTPPGSPPPPPPLPEPPVLKVLS 1277
Query: 194 SLKPLANRHATAS 206
SLKP A ATA+
Sbjct: 1278 SLKPAAPSPATAA 1290
>gi|197276602 microtubule-associated protein 4 isoform 5 [Homo
sapiens]
Length = 817
Score = 40.8 bits (94), Expect = 0.003
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 2/116 (1%)
Query: 91 NKIESIPVKGIIPSKKTKQKEVYPATPACTPSNRLTAKGAEETLGPQKRKKPSEEETG-T 149
NK G++P+ K+ V A P+ PS + K + P+KR PS+ +
Sbjct: 472 NKKPMSLASGLVPAAPPKRPAVASARPSILPSKDVKPKPIADAKAPEKRASPSKPASAPA 531
Query: 150 KRSKMSKEQTRPSCSAGASTSTAMGRSPPPQTSSSAPPNTSSTESLKPLANRHATA 205
RS QT + A+ ++ S P T P TE KP + TA
Sbjct: 532 SRSGSKSTQTVAKTTTAAAVASTGPSSRSPSTLLPKKPTAIKTEG-KPAEVKKMTA 586
>gi|197276600 microtubule-associated protein 4 isoform 4 [Homo
sapiens]
Length = 1135
Score = 40.8 bits (94), Expect = 0.003
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 2/116 (1%)
Query: 91 NKIESIPVKGIIPSKKTKQKEVYPATPACTPSNRLTAKGAEETLGPQKRKKPSEEETG-T 149
NK G++P+ K+ V A P+ PS + K + P+KR PS+ +
Sbjct: 737 NKKPMSLASGLVPAAPPKRPAVASARPSILPSKDVKPKPIADAKAPEKRASPSKPASAPA 796
Query: 150 KRSKMSKEQTRPSCSAGASTSTAMGRSPPPQTSSSAPPNTSSTESLKPLANRHATA 205
RS QT + A+ ++ S P T P TE KP + TA
Sbjct: 797 SRSGSKSTQTVAKTTTAAAVASTGPSSRSPSTLLPKKPTAIKTEG-KPAEVKKMTA 851
>gi|47519675 microtubule-associated protein 4 isoform 2 [Homo
sapiens]
Length = 887
Score = 40.8 bits (94), Expect = 0.003
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 2/116 (1%)
Query: 91 NKIESIPVKGIIPSKKTKQKEVYPATPACTPSNRLTAKGAEETLGPQKRKKPSEEETG-T 149
NK G++P+ K+ V A P+ PS + K + P+KR PS+ +
Sbjct: 472 NKKPMSLASGLVPAAPPKRPAVASARPSILPSKDVKPKPIADAKAPEKRASPSKPASAPA 531
Query: 150 KRSKMSKEQTRPSCSAGASTSTAMGRSPPPQTSSSAPPNTSSTESLKPLANRHATA 205
RS QT + A+ ++ S P T P TE KP + TA
Sbjct: 532 SRSGSKSTQTVAKTTTAAAVASTGPSSRSPSTLLPKKPTAIKTEG-KPAEVKKMTA 586
>gi|47519639 microtubule-associated protein 4 isoform 1 [Homo
sapiens]
Length = 1152
Score = 40.8 bits (94), Expect = 0.003
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 2/116 (1%)
Query: 91 NKIESIPVKGIIPSKKTKQKEVYPATPACTPSNRLTAKGAEETLGPQKRKKPSEEETG-T 149
NK G++P+ K+ V A P+ PS + K + P+KR PS+ +
Sbjct: 737 NKKPMSLASGLVPAAPPKRPAVASARPSILPSKDVKPKPIADAKAPEKRASPSKPASAPA 796
Query: 150 KRSKMSKEQTRPSCSAGASTSTAMGRSPPPQTSSSAPPNTSSTESLKPLANRHATA 205
RS QT + A+ ++ S P T P TE KP + TA
Sbjct: 797 SRSGSKSTQTVAKTTTAAAVASTGPSSRSPSTLLPKKPTAIKTEG-KPAEVKKMTA 851
>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
Length = 360
Score = 39.7 bits (91), Expect = 0.006
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 127 AKGAEETLGPQKRKKPSEEETG---TKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQTSS 183
A+GA +G +KR + G KR K S++ T +CSA ST+ GR +
Sbjct: 120 ARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSA----STSQGRKASTAPGA 175
Query: 184 SAPPNTSSTESLKPLANRHATASKN 208
A P+ TE K A R +S +
Sbjct: 176 EASPSPCITERSKQKARRRTRSSSS 200
Score = 32.0 bits (71), Expect = 1.2
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 104 SKKTKQKEVYPATPACTPSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSC 163
S+K K+K + C+ S T++G + + P PS T + K ++ +TR S
Sbjct: 144 SEKRKKKSRKDTSRNCSAS---TSQGRKASTAPGAEASPSPCITERSKQK-ARRRTRSSS 199
Query: 164 SAGASTSTAMGRSPPPQTSSSA 185
S+ +S+S++ S +SSS+
Sbjct: 200 SSSSSSSSSSSSSSSSSSSSSS 221
>gi|6912458 calcineurin binding protein 1 [Homo sapiens]
Length = 2220
Score = 38.1 bits (87), Expect = 0.017
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Query: 114 PATPACTPSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAM 173
PA P C P+ GAE T + + +P G + S+ Q S AS+
Sbjct: 2046 PAEPHCWPAEAALGTGAEPTCSQEGKLRPEPRRDGEAQEAASETQPLSSPPTAASSKAPS 2105
Query: 174 GRSPPPQTSSSAPPNTSSTESLKPLAN 200
S P P S +S +PL N
Sbjct: 2106 SGSAQPPEGHPGKPEPSRAKS-RPLPN 2131
>gi|239740773 PREDICTED: similar to diffuse panbronchiolitis
critical region 1 [Homo sapiens]
Length = 1400
Score = 37.4 bits (85), Expect = 0.029
Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 8/144 (5%)
Query: 63 GKLIEFFKEIPTLGDLAETLKREKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACTPS 122
G+ F E T T E+ +AN+ ++ G +++ E PA
Sbjct: 745 GQRTPFANEKTTSSSAEPTEHGERTPLANENTTLSPAGPTENRERTANEKTTPFPAEPTE 804
Query: 123 NRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQTS 182
NR E T P++ R+ ++ E+T PS + + TS
Sbjct: 805 NR------ERTANENTTPSPAQPTENGDRTPLANEKTTPSLAEPTENGKRTPFANEKTTS 858
Query: 183 SSAPPNTSSTESLKPLANRHATAS 206
SSA P + + PLAN + T+S
Sbjct: 859 SSAEPTEHAERT--PLANENTTSS 880
Score = 36.6 bits (83), Expect = 0.049
Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 37/205 (18%)
Query: 120 TPSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPP 179
TPS + E T + P+E R+ ++ E+T PS + +
Sbjct: 596 TPSPAEPTENRERTANEKTTPSPAEPTENGDRTPLANEKTTPSLAEPTENGQRTPFANEK 655
Query: 180 QTSSSAPP----------NTSSTES-LKPLANRHATASKNIFRE--DPIIAMVLNA---T 223
TSSSA P N ++T S +P NR TA++N P + A T
Sbjct: 656 TTSSSAEPTEHEERTPLANENTTPSPAEPTENRERTANENTTPSPAGPTENREMTANEKT 715
Query: 224 KVFKYESSENEQRRMFHATVAT---------QTQFFHVKVLNINLKRKFIKKRIIIISNY 274
+F E +EN +R T ++ +T F + K + + + + +
Sbjct: 716 TLFPAEPTENRERTANEKTTSSPAEPTENGQRTPFANEKTTSSSAEP----------TEH 765
Query: 275 SKRNSLLEVNEASSVSEAGPDQTFE 299
+R L NE +++S AGP + E
Sbjct: 766 GERTPL--ANENTTLSPAGPTENRE 788
Score = 30.0 bits (66), Expect = 4.6
Identities = 29/124 (23%), Positives = 43/124 (34%), Gaps = 19/124 (15%)
Query: 334 TKIVNRKTTIYEIQDKTGSMAVVGKGECHNIPCEKGDKLRLFCFRLRKRENMSKLMSEMH 393
+KI RK+T TG V K + P EK + K + H
Sbjct: 226 SKINCRKST-------TGKSTVTRKSDKTGRPLEKS------------MSTLDKTSTSSH 266
Query: 394 SFIQIQKNTNQRSHDSRSMALPQEQSQHPKPSEASTTLPESHLKTPQMPPTTPSSSSFTK 453
N+ +S + P++ + K + +T PE KT T S TK
Sbjct: 267 KTTTSFHNSGNSQTKQKSTSFPEKITAASKTTYKTTGTPEESEKTEDSRTTVASDKLLTK 326
Query: 454 VTKD 457
TK+
Sbjct: 327 TTKN 330
>gi|28559039 mediator complex subunit 1 [Homo sapiens]
Length = 1581
Score = 37.4 bits (85), Expect = 0.029
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Query: 74 TLGDLAETLKREKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACTPSNRLTAKGAEET 133
T GDL + ++++K N + + G P +K P + TPSN +K
Sbjct: 959 TTGDLGKEKTQKRVKEGNGTSNSTLSG--PGLDSK-----PGKRSRTPSNDGKSKDK--- 1008
Query: 134 LGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQTSSSAP 186
P KRKK E S ++ T P+ + G+ + + GRS P ++ P
Sbjct: 1009 --PPKRKKADTEGKSPSHSSSNRPFTPPTSTGGSKSPGSAGRSQTPPGVATPP 1059
>gi|238624188 diffuse panbronchiolitis critical region 1 protein
[Homo sapiens]
Length = 1393
Score = 37.0 bits (84), Expect = 0.038
Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 8/144 (5%)
Query: 63 GKLIEFFKEIPTLGDLAETLKREKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACTPS 122
G+ F E T T E+ +AN+ ++ P++ T+ +E A TP
Sbjct: 683 GQRTPFANEKTTSSSAEPTEHGERTPLANENTTLS-----PAEPTENRE-RTANEKTTPF 736
Query: 123 NRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQTS 182
+ E T P++ R+ ++ E+T PS + + TS
Sbjct: 737 PAEPTENRERTANENTTPSPAQPTENGDRTPLANEKTTPSLAEPTENGKRTPFANEKTTS 796
Query: 183 SSAPPNTSSTESLKPLANRHATAS 206
SSA P + + PLAN + T+S
Sbjct: 797 SSAEPTEHAERT--PLANENTTSS 818
Score = 35.8 bits (81), Expect = 0.084
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 120 TPSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPP 179
TPS + E T + P+E R+ ++ E+T PS + +
Sbjct: 534 TPSPAEPTENRERTANEKTTPSPAEPTENGDRTPLANEKTTPSLAEPTENGQRTPFANEK 593
Query: 180 QTSSSAPPNTSSTESLKPLANRHATAS 206
TSSSA P + E PLAN + T S
Sbjct: 594 TTSSSAEP--TEHEERTPLANENTTPS 618
Score = 30.8 bits (68), Expect = 2.7
Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Query: 81 TLKREKLKVANKIESIPVKGIIPSKKTK--QKEVYPATPACTPSNRLTAKGAEETLGPQK 138
T R++ AN I P + I +K+T +++ T T T E+T +
Sbjct: 1126 TEHRDRATSANVITPAPAEPIKHAKRTTLAHEKMTQVTEKSTEHPEKTTSTTEKTTRTPE 1185
Query: 139 RKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQTSSSAPPNTSSTESLKP 197
+ E+T + K + +P+ + G +T T P +++ + + T+++KP
Sbjct: 1186 KPTLYSEKTICTKGKNTPVPEKPTENLGNTTLTTETIKAPVKSTENPEKTAAVTKTIKP 1244
Score = 30.0 bits (66), Expect = 4.6
Identities = 29/124 (23%), Positives = 43/124 (34%), Gaps = 19/124 (15%)
Query: 334 TKIVNRKTTIYEIQDKTGSMAVVGKGECHNIPCEKGDKLRLFCFRLRKRENMSKLMSEMH 393
+KI RK+T TG V K + P EK + K + H
Sbjct: 164 SKINCRKST-------TGKSTVTRKSDKTGRPLEKS------------MSTLDKTSTSSH 204
Query: 394 SFIQIQKNTNQRSHDSRSMALPQEQSQHPKPSEASTTLPESHLKTPQMPPTTPSSSSFTK 453
N+ +S + P++ + K + +T PE KT T S TK
Sbjct: 205 KTTTSFHNSGNSQTKQKSTSFPEKITAASKTTYKTTGTPEESEKTEDSRTTVASDKLLTK 264
Query: 454 VTKD 457
TK+
Sbjct: 265 TTKN 268
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 36.6 bits (83), Expect = 0.049
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 70 KEIPTLGDLAETLK-REKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACTPSNRLTAK 128
KE P ++ E K +EK +VA K E K PSK ++KE P K
Sbjct: 908 KEAPAKVEVKEDAKPKEKTEVAKK-EPDDAKAKEPSKPAEKKEAAP-----------EKK 955
Query: 129 GAEETLGPQKRKKPSEEETGTKRSK-MSKEQTRPSC-SAGASTSTAMGRSPPPQTSS 183
+E + +KP E + K +SKE ++P A S+ST S PP+ ++
Sbjct: 956 DTKEEKAKKPEEKPKTEAKAKEDDKTLSKEPSKPKAEKAEKSSSTDQKDSKPPEKAT 1012
Score = 34.7 bits (78), Expect = 0.19
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 79 AETLKREKLKVANKIESIPVKGIIPSK-KTKQKEVYPATPACTPSNRLTAKGAEETLGPQ 137
A++ ++E+ K +++S P K K+ KE + P + AK E P+
Sbjct: 530 AKSPEKEEAKSPAEVKS-------PEKAKSPAKEEAKSPPEAKSPEKEEAKSPAEVKSPE 582
Query: 138 KRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQTSSSAPPNTSSTESLK 196
K K P++EE + S E+ + A S A +SP + + S P S E K
Sbjct: 583 KAKSPAKEEAKSPAEAKSPEKAKSPVKEEAK-SPAEAKSPVKEEAKS-PAEVKSPEKAK 639
Score = 32.3 bits (72), Expect = 0.93
Identities = 30/120 (25%), Positives = 42/120 (35%), Gaps = 2/120 (1%)
Query: 79 AETLKREKLKVANKIES-IPVKGIIPSK-KTKQKEVYPATPACTPSNRLTAKGAEETLGP 136
AE EK K K E+ P + P K K+ KE + + AK E P
Sbjct: 576 AEVKSPEKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSPAEVKSP 635
Query: 137 QKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQTSSSAPPNTSSTESLK 196
+K K P++EE + S E+ A + P + S S E K
Sbjct: 636 EKAKSPTKEEAKSPEKAKSPEKEEAKSPEKAKSPVKAEAKSPEKAKSPVKAEAKSPEKAK 695
Score = 32.0 bits (71), Expect = 1.2
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 114 PATPACTPSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAM 173
PA A +P + EE P + K P +EE + S E+ + A S
Sbjct: 505 PAEEAASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAK-SPPE 563
Query: 174 GRSPPPQTSSSAPPNTSSTESLKPLANRHA 203
+SP + + S P S E K A A
Sbjct: 564 AKSPEKEEAKS-PAEVKSPEKAKSPAKEEA 592
Score = 30.0 bits (66), Expect = 4.6
Identities = 39/158 (24%), Positives = 55/158 (34%), Gaps = 12/158 (7%)
Query: 79 AETLKREKLKVANKIES-IPVKGIIPSK---KTKQKEVYPATPACTPSNRLTAKGAEETL 134
AE EK K K E+ P K P K K+ +K P + + EE
Sbjct: 672 AEAKSPEKAKSPVKAEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAK 731
Query: 135 GPQKRKKPSEEETGTKRSKMSKEQTRPSCSAGASTSTAM---GRSP----PPQTSSSAPP 187
P+K K P +EE + S E+ + T RSP P + S
Sbjct: 732 TPEKAKSPVKEEAKSPEKAKSPEKAKTLDVKSPEAKTPAKEEARSPADKFPEKAKSPVKE 791
Query: 188 NTSSTESLK-PLANRHATASKNIFREDPIIAMVLNATK 224
S E K PL K I +++ + + V K
Sbjct: 792 EVKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPVKEEEK 829
Score = 30.0 bits (66), Expect = 4.6
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 84 REKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACT----------PSNRLTAKGAEET 133
+E K A K E+ P K +K K+ E P T A PS K + +
Sbjct: 939 KEPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKTEAKAKEDDKTLSKEPSKPKAEKAEKSS 998
Query: 134 LGPQKRKKPSEEETGTKRSK 153
QK KP E+ T K +K
Sbjct: 999 STDQKDSKPPEKATEDKAAK 1018
Score = 29.6 bits (65), Expect = 6.0
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 103 PSKKTKQ--KEVYPATPACTPSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQTR 160
P K+ K KE + + AK E P+K K P++EE K +K +
Sbjct: 512 PEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEVKSPEKAKSPAKEE--AKSPPEAKSPEK 569
Query: 161 PSCSAGASTSTAMGRSPPPQTSSSAPPNTSSTESLK 196
+ A + P + + +P S E K
Sbjct: 570 EEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAK 605
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 36.6 bits (83), Expect = 0.049
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 6/132 (4%)
Query: 84 REKLKVANKIESIPVKGIIPSKKTKQKEVYPATPA---CTPSNRLTAKGAEETLGPQKRK 140
R ++K + KI + P+K T K PA P S K E++ +
Sbjct: 288 RSQVKASEKILQVRAASA-PAKGTPGKGATPAPPGKAGAVASQTKAGKPEEDSESSSEES 346
Query: 141 KPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQTSSSAPPNTSSTESLKPLAN 200
SEEET ++ + + + + GA+++ A + P + ++ APP + K A
Sbjct: 347 SDSEEETPAAKALLQAKASGKTSQVGAASAPA--KESPRKGAAPAPPGKTGPAVAKAQAG 404
Query: 201 RHATASKNIFRE 212
+ S++ E
Sbjct: 405 KREEDSQSSSEE 416
Score = 32.0 bits (71), Expect = 1.2
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 97 PVKGIIPSKKTKQKEVYPATPACTPS-NRLTAKGAEETLGPQKRKKPSEEETGTKRSKMS 155
P K P + + V PA PS + A A+ GP++ SEEE+ ++ +
Sbjct: 824 PSKVKPPVRNPQNSTVLARGPASVPSVGKAVATAAQAQTGPEEDSGSSEEESDSEEEAET 883
Query: 156 KEQTRPS--------CSAGASTSTAMGRSPPP 179
Q +PS A A S G +P P
Sbjct: 884 LAQVKPSGKTHQIRAALAPAKESPRKGAAPTP 915
Score = 30.4 bits (67), Expect = 3.5
Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 15/144 (10%)
Query: 85 EKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACTPSNRLTAKGAEETLGPQKRKKPSE 144
++ V K P + S TK+ A PA +T + L P KR K E
Sbjct: 208 DETDVEGKPSVKPAQVKASSVSTKESPARKAAPAPGKVGDVTPQVKGGALPPAKRAKKPE 267
Query: 145 EETGTKRSKMSKEQTRPSCSAG----------ASTSTAMGRSPPPQTSSSAPPN-----T 189
EE+ + E+ P+ + ++A + P + ++ APP
Sbjct: 268 EESESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVA 327
Query: 190 SSTESLKPLANRHATASKNIFRED 213
S T++ KP + +++ ++ E+
Sbjct: 328 SQTKAGKPEEDSESSSEESSDSEE 351
Score = 30.4 bits (67), Expect = 3.5
Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 11/124 (8%)
Query: 103 PSKKTKQKEVYPATPACTPSNRLTAKGA--EETLGPQKRKKPSEEETGTKRSKMSKEQTR 160
P+K++ +K PA P T A+ EE + SEEE + K
Sbjct: 377 PAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKAPQV 436
Query: 161 PSCSAGASTSTAMGRSPPP---------QTSSSAPPNTSSTESLKPLANRHATASKNIFR 211
+ SA A S G +P P Q S + S + ++R A A+ N +
Sbjct: 437 RAASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSEESDSDREALAAMNAAQ 496
Query: 212 EDPI 215
P+
Sbjct: 497 VKPL 500
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 36.6 bits (83), Expect = 0.049
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 6/132 (4%)
Query: 84 REKLKVANKIESIPVKGIIPSKKTKQKEVYPATPA---CTPSNRLTAKGAEETLGPQKRK 140
R ++K + KI + P+K T K PA P S K E++ +
Sbjct: 288 RSQVKASEKILQVRAASA-PAKGTPGKGATPAPPGKAGAVASQTKAGKPEEDSESSSEES 346
Query: 141 KPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQTSSSAPPNTSSTESLKPLAN 200
SEEET ++ + + + + GA+++ A + P + ++ APP + K A
Sbjct: 347 SDSEEETPAAKALLQAKASGKTSQVGAASAPA--KESPRKGAAPAPPGKTGPAVAKAQAG 404
Query: 201 RHATASKNIFRE 212
+ S++ E
Sbjct: 405 KREEDSQSSSEE 416
Score = 32.0 bits (71), Expect = 1.2
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 97 PVKGIIPSKKTKQKEVYPATPACTPS-NRLTAKGAEETLGPQKRKKPSEEETGTKRSKMS 155
P K P + + V PA PS + A A+ GP++ SEEE+ ++ +
Sbjct: 824 PSKVKPPVRNPQNSTVLARGPASVPSVGKAVATAAQAQTGPEEDSGSSEEESDSEEEAET 883
Query: 156 KEQTRPS--------CSAGASTSTAMGRSPPP 179
Q +PS A A S G +P P
Sbjct: 884 LAQVKPSGKTHQIRAALAPAKESPRKGAAPTP 915
Score = 30.4 bits (67), Expect = 3.5
Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 15/144 (10%)
Query: 85 EKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACTPSNRLTAKGAEETLGPQKRKKPSE 144
++ V K P + S TK+ A PA +T + L P KR K E
Sbjct: 208 DETDVEGKPSVKPAQVKASSVSTKESPARKAAPAPGKVGDVTPQVKGGALPPAKRAKKPE 267
Query: 145 EETGTKRSKMSKEQTRPSCSAG----------ASTSTAMGRSPPPQTSSSAPPN-----T 189
EE+ + E+ P+ + ++A + P + ++ APP
Sbjct: 268 EESESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVA 327
Query: 190 SSTESLKPLANRHATASKNIFRED 213
S T++ KP + +++ ++ E+
Sbjct: 328 SQTKAGKPEEDSESSSEESSDSEE 351
Score = 30.4 bits (67), Expect = 3.5
Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 11/124 (8%)
Query: 103 PSKKTKQKEVYPATPACTPSNRLTAKGA--EETLGPQKRKKPSEEETGTKRSKMSKEQTR 160
P+K++ +K PA P T A+ EE + SEEE + K
Sbjct: 377 PAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKAPQV 436
Query: 161 PSCSAGASTSTAMGRSPPP---------QTSSSAPPNTSSTESLKPLANRHATASKNIFR 211
+ SA A S G +P P Q S + S + ++R A A+ N +
Sbjct: 437 RAASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSEESDSDREALAAMNAAQ 496
Query: 212 EDPI 215
P+
Sbjct: 497 VKPL 500
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 36.6 bits (83), Expect = 0.049
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 6/132 (4%)
Query: 84 REKLKVANKIESIPVKGIIPSKKTKQKEVYPATPA---CTPSNRLTAKGAEETLGPQKRK 140
R ++K + KI + P+K T K PA P S K E++ +
Sbjct: 288 RSQVKASEKILQVRAASA-PAKGTPGKGATPAPPGKAGAVASQTKAGKPEEDSESSSEES 346
Query: 141 KPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQTSSSAPPNTSSTESLKPLAN 200
SEEET ++ + + + + GA+++ A + P + ++ APP + K A
Sbjct: 347 SDSEEETPAAKALLQAKASGKTSQVGAASAPA--KESPRKGAAPAPPGKTGPAVAKAQAG 404
Query: 201 RHATASKNIFRE 212
+ S++ E
Sbjct: 405 KREEDSQSSSEE 416
Score = 32.0 bits (71), Expect = 1.2
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 97 PVKGIIPSKKTKQKEVYPATPACTPS-NRLTAKGAEETLGPQKRKKPSEEETGTKRSKMS 155
P K P + + V PA PS + A A+ GP++ SEEE+ ++ +
Sbjct: 824 PSKVKPPVRNPQNSTVLARGPASVPSVGKAVATAAQAQTGPEEDSGSSEEESDSEEEAET 883
Query: 156 KEQTRPS--------CSAGASTSTAMGRSPPP 179
Q +PS A A S G +P P
Sbjct: 884 LAQVKPSGKTHQIRAALAPAKESPRKGAAPTP 915
Score = 30.4 bits (67), Expect = 3.5
Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 15/144 (10%)
Query: 85 EKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACTPSNRLTAKGAEETLGPQKRKKPSE 144
++ V K P + S TK+ A PA +T + L P KR K E
Sbjct: 208 DETDVEGKPSVKPAQVKASSVSTKESPARKAAPAPGKVGDVTPQVKGGALPPAKRAKKPE 267
Query: 145 EETGTKRSKMSKEQTRPSCSAG----------ASTSTAMGRSPPPQTSSSAPPN-----T 189
EE+ + E+ P+ + ++A + P + ++ APP
Sbjct: 268 EESESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVA 327
Query: 190 SSTESLKPLANRHATASKNIFRED 213
S T++ KP + +++ ++ E+
Sbjct: 328 SQTKAGKPEEDSESSSEESSDSEE 351
Score = 30.4 bits (67), Expect = 3.5
Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 11/124 (8%)
Query: 103 PSKKTKQKEVYPATPACTPSNRLTAKGA--EETLGPQKRKKPSEEETGTKRSKMSKEQTR 160
P+K++ +K PA P T A+ EE + SEEE + K
Sbjct: 377 PAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKAPQV 436
Query: 161 PSCSAGASTSTAMGRSPPP---------QTSSSAPPNTSSTESLKPLANRHATASKNIFR 211
+ SA A S G +P P Q S + S + ++R A A+ N +
Sbjct: 437 RAASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSEESDSDREALAAMNAAQ 496
Query: 212 EDPI 215
P+
Sbjct: 497 VKPL 500
>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
[Homo sapiens]
Length = 958
Score = 36.6 bits (83), Expect = 0.049
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 6/132 (4%)
Query: 84 REKLKVANKIESIPVKGIIPSKKTKQKEVYPATPA---CTPSNRLTAKGAEETLGPQKRK 140
R ++K + KI + P+K T K PA P S K E++ +
Sbjct: 288 RSQVKASEKILQVRAASA-PAKGTPGKGATPAPPGKAGAVASQTKAGKPEEDSESSSEES 346
Query: 141 KPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQTSSSAPPNTSSTESLKPLAN 200
SEEET ++ + + + + GA+++ A + P + ++ APP + K A
Sbjct: 347 SDSEEETPAAKALLQAKASGKTSQVGAASAPA--KESPRKGAAPAPPGKTGPAVAKAQAG 404
Query: 201 RHATASKNIFRE 212
+ S++ E
Sbjct: 405 KREEDSQSSSEE 416
Score = 32.0 bits (71), Expect = 1.2
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 97 PVKGIIPSKKTKQKEVYPATPACTPS-NRLTAKGAEETLGPQKRKKPSEEETGTKRSKMS 155
P K P + + V PA PS + A A+ GP++ SEEE+ ++ +
Sbjct: 824 PSKVKPPVRNPQNSTVLARGPASVPSVGKAVATAAQAQTGPEEDSGSSEEESDSEEEAET 883
Query: 156 KEQTRPS--------CSAGASTSTAMGRSPPP 179
Q +PS A A S G +P P
Sbjct: 884 LAQVKPSGKTHQIRAALAPAKESPRKGAAPTP 915
Score = 30.4 bits (67), Expect = 3.5
Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 15/144 (10%)
Query: 85 EKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACTPSNRLTAKGAEETLGPQKRKKPSE 144
++ V K P + S TK+ A PA +T + L P KR K E
Sbjct: 208 DETDVEGKPSVKPAQVKASSVSTKESPARKAAPAPGKVGDVTPQVKGGALPPAKRAKKPE 267
Query: 145 EETGTKRSKMSKEQTRPSCSAG----------ASTSTAMGRSPPPQTSSSAPPN-----T 189
EE+ + E+ P+ + ++A + P + ++ APP
Sbjct: 268 EESESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVA 327
Query: 190 SSTESLKPLANRHATASKNIFRED 213
S T++ KP + +++ ++ E+
Sbjct: 328 SQTKAGKPEEDSESSSEESSDSEE 351
Score = 30.4 bits (67), Expect = 3.5
Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 11/124 (8%)
Query: 103 PSKKTKQKEVYPATPACTPSNRLTAKGA--EETLGPQKRKKPSEEETGTKRSKMSKEQTR 160
P+K++ +K PA P T A+ EE + SEEE + K
Sbjct: 377 PAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKAPQV 436
Query: 161 PSCSAGASTSTAMGRSPPP---------QTSSSAPPNTSSTESLKPLANRHATASKNIFR 211
+ SA A S G +P P Q S + S + ++R A A+ N +
Sbjct: 437 RAASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSEESDSDREALAAMNAAQ 496
Query: 212 EDPI 215
P+
Sbjct: 497 VKPL 500
>gi|71979937 sialophorin [Homo sapiens]
Length = 400
Score = 36.6 bits (83), Expect = 0.049
Identities = 49/229 (21%), Positives = 83/229 (36%), Gaps = 31/229 (13%)
Query: 88 KVANKIESIPVKGIIPSKKTKQKEVYPATPACTPS--NRLTAKGAEETLGPQKRKKPSEE 145
+V+ K+ S+P ++T +PA P S + G T P+ + S
Sbjct: 97 EVSIKMSSVP-------QETPHATSHPAVPITANSLGSHTVTGGTITTNSPETSSRTSGA 149
Query: 146 ETGTKRSKMSKEQTR---PSCSAGASTSTAMGRSPPP----------QTSSSAPPNTSST 192
T S + + P A S T+ G S PP T ++ PP T +T
Sbjct: 150 PVTTAASSLETSRGTSGPPLTMATVSLETSKGTSGPPVTMATDSLETSTGTTGPPVTMTT 209
Query: 193 ESLKPLANRHATASKNIFREDPIIAMVLNATKVFKYESSENEQRRMFHATVATQTQFFHV 252
SL+P + ++ + + + + R M V V
Sbjct: 210 GSLEPSSGASGPQVSSVKLSTMMSPTTSTNASTVPFRNPDENSRGMLPVAVLVALLAVIV 269
Query: 253 KVLNINLKRKFIKKR--IIIISNYSKRNSLLEVNEASSVSEAGPDQTFE 299
V + L R+ K+R +++S KRN +++ + AGP Q E
Sbjct: 270 LVALLLLWRRRQKRRTGALVLSRGGKRNGVVD-------AWAGPAQVPE 311
>gi|4507181 sialophorin [Homo sapiens]
Length = 400
Score = 36.6 bits (83), Expect = 0.049
Identities = 49/229 (21%), Positives = 83/229 (36%), Gaps = 31/229 (13%)
Query: 88 KVANKIESIPVKGIIPSKKTKQKEVYPATPACTPS--NRLTAKGAEETLGPQKRKKPSEE 145
+V+ K+ S+P ++T +PA P S + G T P+ + S
Sbjct: 97 EVSIKMSSVP-------QETPHATSHPAVPITANSLGSHTVTGGTITTNSPETSSRTSGA 149
Query: 146 ETGTKRSKMSKEQTR---PSCSAGASTSTAMGRSPPP----------QTSSSAPPNTSST 192
T S + + P A S T+ G S PP T ++ PP T +T
Sbjct: 150 PVTTAASSLETSRGTSGPPLTMATVSLETSKGTSGPPVTMATDSLETSTGTTGPPVTMTT 209
Query: 193 ESLKPLANRHATASKNIFREDPIIAMVLNATKVFKYESSENEQRRMFHATVATQTQFFHV 252
SL+P + ++ + + + + R M V V
Sbjct: 210 GSLEPSSGASGPQVSSVKLSTMMSPTTSTNASTVPFRNPDENSRGMLPVAVLVALLAVIV 269
Query: 253 KVLNINLKRKFIKKR--IIIISNYSKRNSLLEVNEASSVSEAGPDQTFE 299
V + L R+ K+R +++S KRN +++ + AGP Q E
Sbjct: 270 LVALLLLWRRRQKRRTGALVLSRGGKRNGVVD-------AWAGPAQVPE 311
>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
Length = 338
Score = 36.2 bits (82), Expect = 0.064
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 127 AKGAEETLGPQKRKKPSEEETGT---KRSKMSKEQTRPSCSAGASTSTAMGRSPPPQTSS 183
A+GA +G +KR + G KR K S++ T +CSA S + ++ SS
Sbjct: 120 ARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSS 179
Query: 184 SAPPNTSSTESLKPLANRHATAS 206
S+ ++SS+ S ++ +++S
Sbjct: 180 SSSSSSSSSSSSSSSSSSSSSSS 202
>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
Length = 341
Score = 36.2 bits (82), Expect = 0.064
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 127 AKGAEETLGPQKRKKPSEEETGT---KRSKMSKEQTRPSCSAGASTSTAMGRSPPPQTSS 183
A+GA +G +KR + G KR K S++ T +CSA S + ++ SS
Sbjct: 120 ARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSS 179
Query: 184 SAPPNTSSTESLKPLANRHATAS 206
S+ ++SS+ S ++ +++S
Sbjct: 180 SSSSSSSSSSSSSSSSSSSSSSS 202
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.128 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,197,813
Number of Sequences: 37866
Number of extensions: 784523
Number of successful extensions: 6247
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 172
Number of HSP's that attempted gapping in prelim test: 5574
Number of HSP's gapped (non-prelim): 783
length of query: 461
length of database: 18,247,518
effective HSP length: 106
effective length of query: 355
effective length of database: 14,233,722
effective search space: 5052971310
effective search space used: 5052971310
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.