Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 41281656
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|41281656 CD99 antigen-like 2 isoform E4 [Homo sapiens]
(190 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|41281656 CD99 antigen-like 2 isoform E4 [Homo sapiens] 387 e-108
gi|41281670 CD99 antigen-like 2 isoform E3-E4 [Homo sapiens] 372 e-103
gi|71067336 CD99 antigen-like 2 isoform E3'-E4'-E3-E4 [Homo sapi... 342 1e-94
gi|4505183 CD99 antigen isoform a precursor [Homo sapiens] 75 4e-14
gi|171543879 CD99 antigen isoform b precursor [Homo sapiens] 74 8e-14
gi|28212220 XG glycoprotein isoform 1 precursor [Homo sapiens] 44 6e-05
gi|213688348 XG glycoprotein isoform 3 precursor [Homo sapiens] 43 2e-04
gi|213688346 XG glycoprotein isoform 2 precursor [Homo sapiens] 41 5e-04
gi|23510377 KN motif and ankyrin repeat domains 1 isoform b [Hom... 32 0.25
gi|64464726 KN motif and ankyrin repeat domains 1 isoform a [Hom... 32 0.25
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 32 0.25
gi|239747212 PREDICTED: hypothetical protein XP_002346939 [Homo ... 32 0.43
gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens] 32 0.43
gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens] 32 0.43
gi|218563726 DENN/MADD domain containing 1B isoform 1 [Homo sapi... 30 1.3
gi|188219541 DENN/MADD domain containing 1B isoform 2 [Homo sapi... 30 1.3
gi|169213924 PREDICTED: leucine rich repeat containing 68 [Homo ... 30 1.6
gi|169214345 PREDICTED: leucine rich repeat containing 68 [Homo ... 30 1.6
gi|169213302 PREDICTED: leucine rich repeat containing 68 [Homo ... 30 1.6
gi|89257348 homeo box HB9 [Homo sapiens] 30 1.6
gi|41352705 kinesin family member 3C [Homo sapiens] 29 2.1
gi|223278381 ribosomal RNA processing 12 homolog isoform 2 [Homo... 29 2.8
gi|223278379 ribosomal RNA processing 12 homolog isoform 1 [Homo... 29 2.8
gi|42519916 forkhead box O3A [Homo sapiens] 29 2.8
gi|4503739 forkhead box O3A [Homo sapiens] 29 2.8
gi|42794779 myosin 18A isoform b [Homo sapiens] 28 3.6
gi|28416946 myosin 18A isoform a [Homo sapiens] 28 3.6
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 28 3.6
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 28 3.6
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 28 3.6
>gi|41281656 CD99 antigen-like 2 isoform E4 [Homo sapiens]
Length = 190
Score = 387 bits (993), Expect = e-108
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MVAWRSAFLVCLAFSLATLVQRGSGDFDDFNLEDAVKETSSVKRNDFDLADALDDRNDRD 60
MVAWRSAFLVCLAFSLATLVQRGSGDFDDFNLEDAVKETSSVKRNDFDLADALDDRNDRD
Sbjct: 1 MVAWRSAFLVCLAFSLATLVQRGSGDFDDFNLEDAVKETSSVKRNDFDLADALDDRNDRD 60
Query: 61 DGRRKPIAGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGMVAEPGTIAGVAS 120
DGRRKPIAGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGMVAEPGTIAGVAS
Sbjct: 61 DGRRKPIAGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGMVAEPGTIAGVAS 120
Query: 121 ALAMALIGAVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEPQVKYSTLHTQSAE 180
ALAMALIGAVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEPQVKYSTLHTQSAE
Sbjct: 121 ALAMALIGAVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEPQVKYSTLHTQSAE 180
Query: 181 PPPPPEPARI 190
PPPPPEPARI
Sbjct: 181 PPPPPEPARI 190
>gi|41281670 CD99 antigen-like 2 isoform E3-E4 [Homo sapiens]
Length = 213
Score = 372 bits (955), Expect = e-103
Identities = 189/213 (88%), Positives = 190/213 (89%), Gaps = 23/213 (10%)
Query: 1 MVAWRSAFLVCLAFSLATLVQRGSGDFDDFNLEDAVKETSSVKR---------------- 44
MVAWRSAFLVCLAFSLATLVQRGSGDFDDFNLEDAVKETSSVK+
Sbjct: 1 MVAWRSAFLVCLAFSLATLVQRGSGDFDDFNLEDAVKETSSVKQRWNHVTTTTKRPVTTR 60
Query: 45 -------NDFDLADALDDRNDRDDGRRKPIAGGGGFSDKDLEDIVGGGEYKPDKGKGDGR 97
NDFDLADALDDRNDRDDGRRKPIAGGGGFSDKDLEDIVGGGEYKPDKGKGDGR
Sbjct: 61 APANTLGNDFDLADALDDRNDRDDGRRKPIAGGGGFSDKDLEDIVGGGEYKPDKGKGDGR 120
Query: 98 YGSNDDPGSGMVAEPGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQGLNADYVKGE 157
YGSNDDPGSGMVAEPGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQGLNADYVKGE
Sbjct: 121 YGSNDDPGSGMVAEPGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQGLNADYVKGE 180
Query: 158 NLEAVVCEEPQVKYSTLHTQSAEPPPPPEPARI 190
NLEAVVCEEPQVKYSTLHTQSAEPPPPPEPARI
Sbjct: 181 NLEAVVCEEPQVKYSTLHTQSAEPPPPPEPARI 213
>gi|71067336 CD99 antigen-like 2 isoform E3'-E4'-E3-E4 [Homo
sapiens]
Length = 262
Score = 342 bits (877), Expect = 1e-94
Identities = 186/262 (70%), Positives = 188/262 (71%), Gaps = 72/262 (27%)
Query: 1 MVAWRSAFLVCLAFSLATLVQRGSGDFDDFNLEDAVKETSSVKR---------------- 44
MVAWRSAFLVCLAFSLATLVQRGSGDFDDFNLEDAVKETSSVK+
Sbjct: 1 MVAWRSAFLVCLAFSLATLVQRGSGDFDDFNLEDAVKETSSVKQPWDHTTTTTTNRPGTT 60
Query: 45 --------NDFDLADALD------------------------------------------ 54
+ DLADALD
Sbjct: 61 RAPAKPPGSGLDLADALDDQDDGRRKPGIGGRERWNHVTTTTKRPVTTRAPANTLGNDFD 120
Query: 55 ------DRNDRDDGRRKPIAGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGM 108
DRNDRDDGRRKPIAGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGM
Sbjct: 121 LADALDDRNDRDDGRRKPIAGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGM 180
Query: 109 VAEPGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEPQ 168
VAEPGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEPQ
Sbjct: 181 VAEPGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEPQ 240
Query: 169 VKYSTLHTQSAEPPPPPEPARI 190
VKYSTLHTQSAEPPPPPEPARI
Sbjct: 241 VKYSTLHTQSAEPPPPPEPARI 262
>gi|4505183 CD99 antigen isoform a precursor [Homo sapiens]
Length = 185
Score = 74.7 bits (182), Expect = 4e-14
Identities = 72/195 (36%), Positives = 93/195 (47%), Gaps = 39/195 (20%)
Query: 5 RSAFLVCLAFSL-ATLVQRGSGDFDDFNLEDAVKETSSVKR----------NDFDLADAL 53
R A L L F L LV G FD L DA+ + + K +DFDL DA+
Sbjct: 3 RGAALALLLFGLLGVLVAAPDGGFD---LSDALPDNENKKPTAIPKKPSAGDDFDLGDAV 59
Query: 54 DDRNDRDDGRR----KPI--------AGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSN 101
D + DD R KP+ + G FSD DL D V GGE KG DG GS+
Sbjct: 60 VD-GENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGE---GKGGSDGG-GSH 114
Query: 102 DDPGSGMVAEPGTIAGVASALAMALIGAVSSYISYQQKKFCF--SIQQGLNADYVKGENL 159
G A PG I G+ A+ +A+ GA+SS+I+YQ+KK CF + +QG D N
Sbjct: 115 RKEGEEADA-PGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQG-EVDMESHRNA 172
Query: 160 EAVVCEEPQVKYSTL 174
A EP V+ + L
Sbjct: 173 NA----EPAVQRTLL 183
>gi|171543879 CD99 antigen isoform b precursor [Homo sapiens]
Length = 169
Score = 73.9 bits (180), Expect = 8e-14
Identities = 71/185 (38%), Positives = 90/185 (48%), Gaps = 35/185 (18%)
Query: 5 RSAFLVCLAFSL-ATLVQRGSGDFDDFNLEDAVKETSSVKRNDFDLADALDDRNDRDDGR 63
R A L L F L LV G FD L DA+ +DFDL DA+ D + DD R
Sbjct: 3 RGAALALLLFGLLGVLVAAPDGGFD---LSDALPG------DDFDLGDAVVD-GENDDPR 52
Query: 64 R----KPI--------AGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGMVAE 111
KP+ + G FSD DL D V GGE KG DG GS+ G A
Sbjct: 53 PPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGE---GKGGSDGG-GSHRKEGEEADA- 107
Query: 112 PGTIAGVASALAMALIGAVSSYISYQQKKFCF--SIQQGLNADYVKGENLEAVVCEEPQV 169
PG I G+ A+ +A+ GA+SS+I+YQ+KK CF + +QG D N A EP V
Sbjct: 108 PGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQG-EVDMESHRNANA----EPAV 162
Query: 170 KYSTL 174
+ + L
Sbjct: 163 QRTLL 167
>gi|28212220 XG glycoprotein isoform 1 precursor [Homo sapiens]
Length = 180
Score = 44.3 bits (103), Expect = 6e-05
Identities = 48/182 (26%), Positives = 74/182 (40%), Gaps = 49/182 (26%)
Query: 9 LVCLAFSLATLVQRGSGDFDDFNLEDAVKETSSVKRNDFDL--------------ADALD 54
L CLAF + RG DFD L DA+ + K+ + D+ D+
Sbjct: 7 LPCLAFLCFLMHARGQRDFD---LADALDDPEPTKKPNSDIYPKPKPPYYPQPENPDSGG 63
Query: 55 DRNDRDDGRRKPIAG-----GGGFSDKDLEDIVGGGEY------KPDKGKGDG---RYGS 100
+ R R +P G GG F+D D +D G Y +P G G G YG+
Sbjct: 64 NIYPRPKPRPQPQPGNSGNSGGYFNDVDRDD----GRYPPRPRPRPPAGGGGGGYSSYGN 119
Query: 101 ND------------DPGSGMVAEPGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQG 148
+D +P MVA+ ++ + S + + L+GA +SY ++ CF +
Sbjct: 120 SDNTHGGDHHSTYGNPEGNMVAK--IVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEP 177
Query: 149 LN 150
N
Sbjct: 178 EN 179
>gi|213688348 XG glycoprotein isoform 3 precursor [Homo sapiens]
Length = 181
Score = 42.7 bits (99), Expect = 2e-04
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 58 DRDDGRRKPI--------AGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGMV 109
DRDDGR P GGGG+S D GG++ G +G MV
Sbjct: 92 DRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGGDHHSTYGNPEGN----------MV 141
Query: 110 AEPGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQGLN 150
A+ ++ + S + + L+GA +SY ++ CF + N
Sbjct: 142 AK--IVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPEN 180
>gi|213688346 XG glycoprotein isoform 2 precursor [Homo sapiens]
Length = 195
Score = 41.2 bits (95), Expect = 5e-04
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 58 DRDDGRRKPI--------AGGGGFSDKDLEDIVGG-GEYKPDKGKGDGRYGSND----DP 104
DRDDGR P GGGG+S D G G Y+ + G+ G + +P
Sbjct: 91 DRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGRGGYRLNSRYGNTYGGDHHSTYGNP 150
Query: 105 GSGMVAEPGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQGLN 150
MVA+ ++ + S + + L+GA +SY ++ CF + N
Sbjct: 151 EGNMVAK--IVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPEN 194
>gi|23510377 KN motif and ankyrin repeat domains 1 isoform b [Homo
sapiens]
Length = 1194
Score = 32.3 bits (72), Expect = 0.25
Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 3/121 (2%)
Query: 63 RRKPIAGGGGF-SDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGMVAEPGTIAGVASA 121
RR +A GG + L VG G + P K + Y N D GS A P T + +S
Sbjct: 22 RRPRLASFGGMGTTSSLPSFVGSGNHNPAKHQLQNGYQGNGDYGSYAPAAPTTSSMGSSI 81
Query: 122 LAMALIGAVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEP--QVKYSTLHTQSA 179
L +S+ ++ I++ + + + LE V P QVK S L +
Sbjct: 82 RHSPLSSGISTPVTNVSPMHLQHIREQMAIALKRLKELEEQVRTIPVLQVKISVLQEEKR 141
Query: 180 E 180
+
Sbjct: 142 Q 142
>gi|64464726 KN motif and ankyrin repeat domains 1 isoform a [Homo
sapiens]
Length = 1352
Score = 32.3 bits (72), Expect = 0.25
Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 3/121 (2%)
Query: 63 RRKPIAGGGGF-SDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGMVAEPGTIAGVASA 121
RR +A GG + L VG G + P K + Y N D GS A P T + +S
Sbjct: 180 RRPRLASFGGMGTTSSLPSFVGSGNHNPAKHQLQNGYQGNGDYGSYAPAAPTTSSMGSSI 239
Query: 122 LAMALIGAVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEP--QVKYSTLHTQSA 179
L +S+ ++ I++ + + + LE V P QVK S L +
Sbjct: 240 RHSPLSSGISTPVTNVSPMHLQHIREQMAIALKRLKELEEQVRTIPVLQVKISVLQEEKR 299
Query: 180 E 180
+
Sbjct: 300 Q 300
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 32.3 bits (72), Expect = 0.25
Identities = 29/102 (28%), Positives = 36/102 (35%), Gaps = 21/102 (20%)
Query: 18 TLVQRGSGDFDDFNLEDAVKETSSVKRNDFDLADALDDRNDRDDGRRKPIAGGGGFSDKD 77
T Q G G DD + D+ E ND + D +D D DD
Sbjct: 1931 TSSQDGQGKGDDVIVIDSDDEEEDDDENDGEHEDYEEDEEDDDDD--------------- 1975
Query: 78 LEDIVGGGEYKPDKGKGDGRYGSN-----DDPGSGMVAEPGT 114
ED G G+ D +G G N DD G +PGT
Sbjct: 1976 -EDDTGMGDEGEDSNEGTGSADGNDGYEADDAEGGDGTDPGT 2016
>gi|239747212 PREDICTED: hypothetical protein XP_002346939 [Homo
sapiens]
Length = 1158
Score = 31.6 bits (70), Expect = 0.43
Identities = 26/105 (24%), Positives = 36/105 (34%), Gaps = 7/105 (6%)
Query: 15 SLATLVQRGSGDFDDFNLEDAVKETSSVKRNDFDLADALDDRNDRDDGRRKPIAGGGGFS 74
S T G + + LED+ E + +D +D N G G
Sbjct: 467 SQGTTAAAGPEEKFESRLEDSCVEKLKTRSSDMSDGSDFEDVNTTTGTDLDTTTGTGSDL 526
Query: 75 DKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGMVAEPGTIAGVA 119
D D++ PDK KG G+ G +A PG VA
Sbjct: 527 DSDVDS-------DPDKDKGKGKSAEGQPKFGGGLAPPGAPNSVA 564
>gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens]
Length = 1256
Score = 31.6 bits (70), Expect = 0.43
Identities = 26/105 (24%), Positives = 36/105 (34%), Gaps = 7/105 (6%)
Query: 15 SLATLVQRGSGDFDDFNLEDAVKETSSVKRNDFDLADALDDRNDRDDGRRKPIAGGGGFS 74
S T G + + LED+ E + +D +D N G G
Sbjct: 566 SQGTTAAAGPEEKFESRLEDSCVEKLKTRSSDMSDGSDFEDVNTTTGTDLDTTTGTGSDL 625
Query: 75 DKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGMVAEPGTIAGVA 119
D D++ PDK KG G+ G +A PG VA
Sbjct: 626 DSDVDS-------DPDKDKGKGKSAEGQPKFGGGLAPPGAPNSVA 663
>gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens]
Length = 1275
Score = 31.6 bits (70), Expect = 0.43
Identities = 26/105 (24%), Positives = 36/105 (34%), Gaps = 7/105 (6%)
Query: 15 SLATLVQRGSGDFDDFNLEDAVKETSSVKRNDFDLADALDDRNDRDDGRRKPIAGGGGFS 74
S T G + + LED+ E + +D +D N G G
Sbjct: 566 SQGTTAAAGPEEKFESRLEDSCVEKLKTRSSDMSDGSDFEDVNTTTGTDLDTTTGTGSDL 625
Query: 75 DKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGMVAEPGTIAGVA 119
D D++ PDK KG G+ G +A PG VA
Sbjct: 626 DSDVDS-------DPDKDKGKGKSAEGQPKFGGGLAPPGAPNSVA 663
>gi|218563726 DENN/MADD domain containing 1B isoform 1 [Homo
sapiens]
Length = 755
Score = 30.0 bits (66), Expect = 1.3
Identities = 20/53 (37%), Positives = 24/53 (45%)
Query: 33 EDAVKETSSVKRNDFDLADALDDRNDRDDGRRKPIAGGGGFSDKDLEDIVGGG 85
E VK SSV + + A L DGR + G GFSD E+I GG
Sbjct: 338 ESFVKHRSSVMKQFLETAINLQLFKQFIDGRLAKLNAGRGFSDVFEEEITSGG 390
>gi|188219541 DENN/MADD domain containing 1B isoform 2 [Homo
sapiens]
Length = 426
Score = 30.0 bits (66), Expect = 1.3
Identities = 20/53 (37%), Positives = 24/53 (45%)
Query: 33 EDAVKETSSVKRNDFDLADALDDRNDRDDGRRKPIAGGGGFSDKDLEDIVGGG 85
E VK SSV + + A L DGR + G GFSD E+I GG
Sbjct: 358 ESFVKHRSSVMKQFLETAINLQLFKQFIDGRLAKLNAGRGFSDVFEEEITSGG 410
>gi|169213924 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 29.6 bits (65), Expect = 1.6
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 150 NADYVKGENLEAVVCEEPQVKYSTLHTQSAEPPPPPEPAR 189
++D + E E E P T T S+EP PPPEP R
Sbjct: 523 DSDGEEEEEEEGERDETPSGAIDTRDTGSSEPQPPPEPPR 562
Score = 28.5 bits (62), Expect = 3.6
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 129 AVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEPQVKYSTLHTQSAEPPPPPEPA 188
AV S+I QK IQ G + V E + PQ+ S T + EP P EPA
Sbjct: 445 AVKSFIE-TQKALLAEIQNGCKRNLVLAREREEKE-QPPQLSASMPETTATEPQPDDEPA 502
>gi|169214345 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 29.6 bits (65), Expect = 1.6
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 150 NADYVKGENLEAVVCEEPQVKYSTLHTQSAEPPPPPEPAR 189
++D + E E E P T T S+EP PPPEP R
Sbjct: 523 DSDGEEEEEEEGERDETPSGAIDTRDTGSSEPQPPPEPPR 562
Score = 28.5 bits (62), Expect = 3.6
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 129 AVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEPQVKYSTLHTQSAEPPPPPEPA 188
AV S+I QK IQ G + V E + PQ+ S T + EP P EPA
Sbjct: 445 AVKSFIE-TQKALLAEIQNGCKRNLVLAREREEKE-QPPQLSASMPETTATEPQPDDEPA 502
>gi|169213302 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 29.6 bits (65), Expect = 1.6
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 150 NADYVKGENLEAVVCEEPQVKYSTLHTQSAEPPPPPEPAR 189
++D + E E E P T T S+EP PPPEP R
Sbjct: 523 DSDGEEEEEEEGERDETPSGAIDTRDTGSSEPQPPPEPPR 562
Score = 28.5 bits (62), Expect = 3.6
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 129 AVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEPQVKYSTLHTQSAEPPPPPEPA 188
AV S+I QK IQ G + V E + PQ+ S T + EP P EPA
Sbjct: 445 AVKSFIE-TQKALLAEIQNGCKRNLVLAREREEKE-QPPQLSASMPETTATEPQPDDEPA 502
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 29.6 bits (65), Expect = 1.6
Identities = 29/105 (27%), Positives = 39/105 (37%), Gaps = 8/105 (7%)
Query: 92 GKGDGRYGSNDDPGSGMVAEPGTIAGVASALAMALIG--AVSSYISYQQKKFCFSIQQGL 149
G G G G + P A PG A A+A A A G A+ + Q Q L
Sbjct: 101 GGGGGTGGGHGGPHHH--AHPGAAAAAAAAAAAAAAGGLALGLHPGGAQGGAGLPAQAAL 158
Query: 150 NADYVKGENLEAVVC----EEPQVKYSTLHTQSAEPPPPPEPARI 190
V G + A + P + YS Q A P P +P ++
Sbjct: 159 YGHPVYGYSAAAAAAALAGQHPALSYSYPQVQGAHPAHPADPIKL 203
>gi|41352705 kinesin family member 3C [Homo sapiens]
Length = 793
Score = 29.3 bits (64), Expect = 2.1
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 84 GGEYKPDKGKGDGRYGSNDDPGSGMVAEPGTIAGVASALA---MALIGAVSSYISYQQKK 140
GG P G G G GS G E I SAL AL G S++I Y+ K
Sbjct: 262 GGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVIAALAGNRSTHIPYRDSK 321
Query: 141 FCFSIQQGLNAD 152
+Q L +
Sbjct: 322 LTRLLQDSLGGN 333
>gi|223278381 ribosomal RNA processing 12 homolog isoform 2 [Homo
sapiens]
Length = 1236
Score = 28.9 bits (63), Expect = 2.8
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 17/86 (19%)
Query: 36 VKETSSVKRNDFDLADALDDRNDRDDGRRKPI-----------------AGGGGFSDKDL 78
++E K D ++AD ++D R+ +K AGG G
Sbjct: 1104 MEEEEGAKGEDEEMADPMEDVIIRNKKHQKLKHQKEAEEEELEIPPQYQAGGSGIHRPVA 1163
Query: 79 EDIVGGGEYKPDKGKGDGRYGSNDDP 104
+ + G EYK K KGD + DP
Sbjct: 1164 KKAMPGAEYKAKKAKGDVKKKGRPDP 1189
>gi|223278379 ribosomal RNA processing 12 homolog isoform 1 [Homo
sapiens]
Length = 1297
Score = 28.9 bits (63), Expect = 2.8
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 17/86 (19%)
Query: 36 VKETSSVKRNDFDLADALDDRNDRDDGRRKPI-----------------AGGGGFSDKDL 78
++E K D ++AD ++D R+ +K AGG G
Sbjct: 1165 MEEEEGAKGEDEEMADPMEDVIIRNKKHQKLKHQKEAEEEELEIPPQYQAGGSGIHRPVA 1224
Query: 79 EDIVGGGEYKPDKGKGDGRYGSNDDP 104
+ + G EYK K KGD + DP
Sbjct: 1225 KKAMPGAEYKAKKAKGDVKKKGRPDP 1250
>gi|42519916 forkhead box O3A [Homo sapiens]
Length = 673
Score = 28.9 bits (63), Expect = 2.8
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
Query: 54 DDRNDRDDGRRKPIA---GGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGMVA 110
DD +D D G R A GGGG S +G G D + G DPGSG
Sbjct: 62 DDEDDEDGGGRAGSAMAIGGGGGSGT-----LGSGLLLEDSARVLAPGGQ--DPGSGPAT 114
Query: 111 EPGTIAGVASAL 122
G ++G AL
Sbjct: 115 AAGGLSGGTQAL 126
>gi|4503739 forkhead box O3A [Homo sapiens]
Length = 673
Score = 28.9 bits (63), Expect = 2.8
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
Query: 54 DDRNDRDDGRRKPIA---GGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGMVA 110
DD +D D G R A GGGG S +G G D + G DPGSG
Sbjct: 62 DDEDDEDGGGRAGSAMAIGGGGGSGT-----LGSGLLLEDSARVLAPGGQ--DPGSGPAT 114
Query: 111 EPGTIAGVASAL 122
G ++G AL
Sbjct: 115 AAGGLSGGTQAL 126
>gi|42794779 myosin 18A isoform b [Homo sapiens]
Length = 2039
Score = 28.5 bits (62), Expect = 3.6
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 48 DLADALDDRNDRDDGRRKPIAGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSND 102
DL A++D + D+ + G D +LED V G + K KG + S+D
Sbjct: 1931 DLQAAIEDEMESDENEDLINSEGDSDVDSELEDRVDGVKSWLSKNKGPSKAASDD 1985
>gi|28416946 myosin 18A isoform a [Homo sapiens]
Length = 2054
Score = 28.5 bits (62), Expect = 3.6
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 31 NLEDAVKETSSVKRNDFDLADALDDRNDRDDGRRKPIAGGGGFSDKDLEDIVGGGEYKPD 90
+L+ A+++ N+ DL ++L D + R+ + G D +LED V G +
Sbjct: 1931 DLQAAIEDEMESDENE-DLINSLQDMVTKYQKRKNKLEGDSDV-DSELEDRVDGVKSWLS 1988
Query: 91 KGKGDGRYGSND 102
K KG + S+D
Sbjct: 1989 KNKGPSKAASDD 2000
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 28.5 bits (62), Expect = 3.6
Identities = 34/125 (27%), Positives = 48/125 (38%), Gaps = 25/125 (20%)
Query: 68 AGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGMVAEPGTIAGVASALAMALI 127
A GGG GGG Y G G S G GM+ PG G A++L+ A
Sbjct: 291 AAGGG----------GGGGYGGSSA-GYGVLSSPRQQGGGMMMGPG--GGGAASLSKAAA 337
Query: 128 GAVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEPQVK-----YSTLHTQSAEPP 182
G+ + ++F Q A + L + P ++ Y + SA PP
Sbjct: 338 GSAAGGF----QRFAGQNQHPSGATPTLNQLLTS---PSPMMRSYGGSYPEYSSPSAPPP 390
Query: 183 PPPEP 187
PP +P
Sbjct: 391 PPSQP 395
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 28.5 bits (62), Expect = 3.6
Identities = 34/125 (27%), Positives = 48/125 (38%), Gaps = 25/125 (20%)
Query: 68 AGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGMVAEPGTIAGVASALAMALI 127
A GGG GGG Y G G S G GM+ PG G A++L+ A
Sbjct: 291 AAGGG----------GGGGYGGSSA-GYGVLSSPRQQGGGMMMGPG--GGGAASLSKAAA 337
Query: 128 GAVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEPQVK-----YSTLHTQSAEPP 182
G+ + ++F Q A + L + P ++ Y + SA PP
Sbjct: 338 GSAAGGF----QRFAGQNQHPSGATPTLNQLLTS---PSPMMRSYGGSYPEYSSPSAPPP 390
Query: 183 PPPEP 187
PP +P
Sbjct: 391 PPSQP 395
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 28.5 bits (62), Expect = 3.6
Identities = 34/125 (27%), Positives = 48/125 (38%), Gaps = 25/125 (20%)
Query: 68 AGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGMVAEPGTIAGVASALAMALI 127
A GGG GGG Y G G S G GM+ PG G A++L+ A
Sbjct: 291 AAGGG----------GGGGYGGSSA-GYGVLSSPRQQGGGMMMGPG--GGGAASLSKAAA 337
Query: 128 GAVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEPQVK-----YSTLHTQSAEPP 182
G+ + ++F Q A + L + P ++ Y + SA PP
Sbjct: 338 GSAAGGF----QRFAGQNQHPSGATPTLNQLLTS---PSPMMRSYGGSYPEYSSPSAPPP 390
Query: 183 PPPEP 187
PP +P
Sbjct: 391 PPSQP 395
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,881,947
Number of Sequences: 37866
Number of extensions: 435709
Number of successful extensions: 2337
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 2259
Number of HSP's gapped (non-prelim): 107
length of query: 190
length of database: 18,247,518
effective HSP length: 96
effective length of query: 94
effective length of database: 14,612,382
effective search space: 1373563908
effective search space used: 1373563908
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.