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Search of human proteins with 41281603
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|41281603 HAI-2 related small protein [Homo sapiens]
(106 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|41281603 HAI-2 related small protein [Homo sapiens] 219 4e-58
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 50 5e-07
gi|110611184 chromodomain helicase DNA binding protein 2 isoform... 50 5e-07
gi|42560244 peptidylprolyl isomerase G [Homo sapiens] 45 2e-05
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 43 5e-05
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 42 8e-05
gi|57864582 hornerin [Homo sapiens] 42 1e-04
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens] 41 2e-04
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens] 41 2e-04
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens] 41 2e-04
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 40 5e-04
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 40 5e-04
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 40 5e-04
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 40 5e-04
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 40 5e-04
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 40 5e-04
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 40 5e-04
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 39 7e-04
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 38 0.002
gi|119120903 par-3 partitioning defective 3 homolog B isoform c ... 38 0.002
gi|119120907 par-3 partitioning defective 3 homolog B isoform a ... 38 0.002
gi|119120897 par-3 partitioning defective 3 homolog B isoform b ... 38 0.002
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens] 38 0.002
gi|56090620 NFKB activating protein-like [Homo sapiens] 38 0.002
gi|27734775 hypothetical protein LOC286499 [Homo sapiens] 38 0.002
gi|21361576 zinc finger, CCHC domain containing 17 [Homo sapiens] 37 0.003
gi|168229156 NFKB activating protein [Homo sapiens] 37 0.003
gi|149408146 TOX high mobility group box family member 2 isoform... 37 0.003
gi|149408144 TOX high mobility group box family member 2 isoform... 37 0.003
gi|149408141 TOX high mobility group box family member 2 isoform... 37 0.003
>gi|41281603 HAI-2 related small protein [Homo sapiens]
Length = 106
Score = 219 bits (558), Expect = 4e-58
Identities = 106/106 (100%), Positives = 106/106 (100%)
Query: 1 MEFDLGAALEPTSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSS 60
MEFDLGAALEPTSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSS
Sbjct: 1 MEFDLGAALEPTSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSS 60
Query: 61 DSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKKKEAPH 106
DSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKKKEAPH
Sbjct: 61 DSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKKKEAPH 106
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform
1 [Homo sapiens]
Length = 1828
Score = 49.7 bits (117), Expect = 5e-07
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 20 AGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESI 79
+ H + S +SE+ G P GH S S+SSS SS+S ++ +S +AGSK +
Sbjct: 20 SSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVL 79
Query: 80 PGKAKKPKVKKK 91
P +KP KK+
Sbjct: 80 PEAKEKPASKKE 91
Score = 25.8 bits (55), Expect = 7.9
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 46 KQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKA-KKPKVKKKEKGKKEKGKKKEA 104
KQ +S++S+ + K K +P + KP+VKK+ K ++ K KK+++
Sbjct: 152 KQEPSEDEQEQGTSAESEPEQKK----VKARRPVPRRTVPKPRVKKQPKTQRGKRKKQDS 207
>gi|110611184 chromodomain helicase DNA binding protein 2 isoform
2 [Homo sapiens]
Length = 501
Score = 49.7 bits (117), Expect = 5e-07
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 20 AGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESI 79
+ H + S +SE+ G P GH S S+SSS SS+S ++ +S +AGSK +
Sbjct: 20 SSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVL 79
Query: 80 PGKAKKPKVKKK 91
P +KP KK+
Sbjct: 80 PEAKEKPASKKE 91
Score = 25.8 bits (55), Expect = 7.9
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 46 KQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKA-KKPKVKKKEKGKKEKGKKKEA 104
KQ +S++S+ + K K +P + KP+VKK+ K ++ K KK+++
Sbjct: 152 KQEPSEDEQEQGTSAESEPEQKK----VKARRPVPRRTVPKPRVKKQPKTQRGKRKKQDS 207
>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
Length = 754
Score = 44.7 bits (104), Expect = 2e-05
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 46 KQGHHSSSDSSSSSSDSD--TDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKKKE 103
K+ H SSS SSSSSSDSD +D +S + S + K+KK K K ++ +K K +KK+
Sbjct: 188 KKRHKSSSSSSSSSSDSDSSSDSQSSSDSSDSESATEEKSKKRKKKHRKNSRKHKKEKKK 247
Score = 37.0 bits (84), Expect = 0.003
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 46 KQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKK-KEKGKKEKGKKKEA 104
K SSS SS S S SD+ S ++ S+ K +K K +K K KKEK K+K++
Sbjct: 192 KSSSSSSSSSSDSDSSSDSQSSSDSSDSESATEEKSKKRKKKHRKNSRKHKKEKKKRKKS 251
Score = 35.0 bits (79), Expect = 0.013
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 51 SSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKKKEA 104
SSSDS SSS SD++ + K+ + ++K K +KK++ K +K E+
Sbjct: 206 SSSDSQSSSDSSDSESATEEKSKKRKKKHRKNSRKHKKEKKKRKKSKKSASSES 259
Score = 35.0 bits (79), Expect = 0.013
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 23 GGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGK 82
G +L+ K RS H + S+S + ++ + VK H + SK+ +
Sbjct: 383 GDKSELNEIKENQRSPVRVKERKITDHRNVSESPNRKNEKEKKVKDHKSNSKERDIRRNS 442
Query: 83 AK----KPKVKKKEKGK-----KEKGKKKE 103
K K KVKK+ K K KEK K KE
Sbjct: 443 EKDDKYKNKVKKRAKSKSRSKSKEKSKSKE 472
Score = 33.9 bits (76), Expect = 0.029
Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 51 SSSDSSSSSSDSD--TDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKKKEA 104
S S SSS SSDS+ T+ KS K+H K KK K KK++K KK + EA
Sbjct: 208 SDSQSSSDSSDSESATEEKSKKR-KKKHRKNSRKHKKEK-KKRKKSKKSASSESEA 261
Score = 26.9 bits (58), Expect = 3.6
Identities = 17/53 (32%), Positives = 22/53 (41%)
Query: 51 SSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKKKE 103
S S S S + D K + K+ S VK+KEK KGK +E
Sbjct: 460 SRSKSKEKSKSKERDSKHNRNEEKRMRSRSKGRDHENVKEKEKQSDSKGKDQE 512
Score = 26.2 bits (56), Expect = 6.1
Identities = 17/74 (22%), Positives = 28/74 (37%)
Query: 29 SPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKV 88
S H+ + + H+SS++S +D D S S Q + K K
Sbjct: 651 SSHRKENSESEKRMYSKSRDHNSSNNSREKKADRDQSPFSKIKQSSQDNELKSSMLKNKE 710
Query: 89 KKKEKGKKEKGKKK 102
+K + EK +K
Sbjct: 711 DEKIRSSVEKENQK 724
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 43.1 bits (100), Expect = 5e-05
Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 23 GGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGK 82
GGDP S H S + + SSS SSSSSS S + S ++ S S P K
Sbjct: 139 GGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPHK 198
Query: 83 AKKPKVKKKEKGKKEKGKKKEA 104
K + KEK K+ + K A
Sbjct: 199 LMK---EHKEKPSKDSREHKSA 217
Score = 32.0 bits (71), Expect = 0.11
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 41 AGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKK-----------PKVK 89
AG P + H+SS SSSSSS S + S ++ S S + K
Sbjct: 138 AGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPH 197
Query: 90 KKEKGKKEKGKKKEAPH 106
K K KEK K H
Sbjct: 198 KLMKEHKEKPSKDSREH 214
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 42.4 bits (98), Expect = 8e-05
Identities = 31/92 (33%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 12 TSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAA 71
TS+ G +P G E ++ SSS SSSSSS S + S ++
Sbjct: 155 TSRNCSASTSQGRKASTAP----GAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSS 210
Query: 72 GSKQHESIPGKAKKPKVKKKEKGKKEKGKKKE 103
S GK K + KKK+K KK K K KE
Sbjct: 211 SSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKE 242
Score = 38.9 bits (89), Expect = 0.001
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 51 SSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKKK 102
SSS SSSSSS S + S ++ + + K K+ K KKK K K+KGK+K
Sbjct: 192 SSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 243
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 41.6 bits (96), Expect = 1e-04
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 24 GDPKLSPHKVQGRSEAGAGPG--PKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPG 81
G+ H+ GR + G+G G P G H S SSS+D+ ++G QH+S G
Sbjct: 180 GEQNSDSHQSSGRGQCGSGSGQSPNYGQHGSGSGQSSSNDTHGSGSGQSSGFSQHKSSSG 239
Query: 82 KA 83
++
Sbjct: 240 QS 241
Score = 36.6 bits (83), Expect = 0.004
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 2 EFDLGAALEPTSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSD 61
+ + G+ K G G+GH QG+ + +G G H SS SSS
Sbjct: 350 QHESGSGQSSGYSKHGSGSGHSSS--------QGQHGSTSGQASSSGQHGSSSRQSSSYG 401
Query: 62 SDTDVKSHAAGSKQHESIPGKA 83
H++G QH S G++
Sbjct: 402 QHESASRHSSGRGQHSSGSGQS 423
Score = 36.2 bits (82), Expect = 0.006
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 17 GVGAGHGGDPKLSPH-KVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQ 75
G G G+ S H QGR + +G G H SS SSS HA+G +
Sbjct: 823 GSGQGYSQHGSASGHFSSQGRHGSTSGQSSSSGQHDSSSGQSSSYGQHESASHHASGRGR 882
Query: 76 HESIPGKA 83
H S G++
Sbjct: 883 HGSGSGQS 890
Score = 36.2 bits (82), Expect = 0.006
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 6 GAALEPTSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTD 65
G+ P+ + G G+G G+ +G G GHH SS SSS
Sbjct: 1134 GSRQSPSYGRHGSGSGRSSS--------SGQHGSGLGESSGFGHHESSSGQSSSYSQHGS 1185
Query: 66 VKSHAAGSKQHESIPGKAKK 85
H++G QH S G++ +
Sbjct: 1186 GSGHSSGYGQHGSRSGQSSR 1205
Score = 36.2 bits (82), Expect = 0.006
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 6 GAALEPTSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTD 65
G+ P+ + G G+G G+ +G G GHH SS SSS
Sbjct: 1604 GSRQSPSYGRHGSGSGRSSS--------SGQHGSGLGESSGFGHHESSSGQSSSYSQHGS 1655
Query: 66 VKSHAAGSKQHESIPGKAKK 85
H++G QH S G++ +
Sbjct: 1656 GSGHSSGYGQHGSRSGQSSR 1675
Score = 36.2 bits (82), Expect = 0.006
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 6 GAALEPTSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTD 65
G+ P+ + G G+G G+ +G G GHH SS SSS
Sbjct: 2544 GSRQSPSYGRHGSGSGRSSS--------SGQHGSGLGESSGFGHHESSSGQSSSYSQHGS 2595
Query: 66 VKSHAAGSKQHESIPGKAKK 85
H++G QH S G++ +
Sbjct: 2596 GSGHSSGYGQHGSRSGQSSR 2615
Score = 35.8 bits (81), Expect = 0.008
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 6 GAALEPTSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTD 65
G+ P+ + G G+G G+ G G GHH SS SSS
Sbjct: 2074 GSRQSPSYGRHGSGSGRSSS--------SGQHGPGLGESSGFGHHESSSGQSSSYSQHGS 2125
Query: 66 VKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEK 98
H++G QH S G++ + + G +
Sbjct: 2126 GSGHSSGYGQHGSRSGQSSRGERHGSSSGSSSR 2158
Score = 35.4 bits (80), Expect = 0.010
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 6 GAALEPTSQKPGVGAGHGGDPKLSPH-------KVQGRSEAGAGPGPKQGHHSSSDSSSS 58
G+ P+ + G G+GH H GR +G+G GHH SS SS
Sbjct: 1355 GSGQSPSRGRHGSGSGHSSS--YGQHGSGSGWSSSSGRHGSGSGQSSGFGHHESSSWQSS 1412
Query: 59 SSDSDTDVKSHAAGSKQHESIPGKAKK 85
H++ +QH S G++ +
Sbjct: 1413 GCTQHGSGSGHSSSYEQHGSRSGQSSR 1439
Score = 35.0 bits (79), Expect = 0.013
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 12 TSQKPGVG---AGHGGDPKLSPHKVQ-GRSEA------GAGPGPKQGHHSSSDSSSSSSD 61
+ Q PG G +G G P H GRS + G+G GHH SS SS
Sbjct: 420 SGQSPGHGQRGSGSGQSPSSGQHGTGFGRSSSSGPYVSGSGYSSGFGHHESSSEHSSGYT 479
Query: 62 SDTDVKSHAAGSKQHESIPGKAKK 85
H++G QH S G++ +
Sbjct: 480 QHGSGSGHSSGHGQHGSRSGQSSR 503
Score = 35.0 bits (79), Expect = 0.013
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 16/110 (14%)
Query: 3 FDLGAALEPTSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGH--HSSSDSSS--- 57
F ++ P G +G G S H G ++ G+G G GH H S S
Sbjct: 446 FGRSSSSGPYVSGSGYSSGFGHHESSSEHS-SGYTQHGSGSGHSSGHGQHGSRSGQSSRG 504
Query: 58 ----SSSDSDTDVKSHAAGSKQ------HESIPGKAKKPKVKKKEKGKKE 97
SS+ S + H +GS+Q H S G++ P + E G ++
Sbjct: 505 ERQGSSAGSSSSYGQHGSGSRQSLGHSRHGSGSGQSPSPSRGRHESGSRQ 554
Score = 35.0 bits (79), Expect = 0.013
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 6 GAALEPTSQKPGVGAGHGGDPKLSPH-------KVQGRSEAGAGPGPKQGHHSSSDSSSS 58
G+ P+ + G G+GH H GR +G+G GHH SS SS
Sbjct: 1825 GSGQSPSRGRHGSGSGHSSS--YGQHGSGSGWSSSSGRHGSGSGQSSGFGHHESSSWQSS 1882
Query: 59 SSDSDTDVKSHAAGSKQHESIPGKAKK 85
H++ +QH S G++ +
Sbjct: 1883 GYTQHGSGSGHSSSYEQHGSRSGQSSR 1909
Score = 35.0 bits (79), Expect = 0.013
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 6 GAALEPTSQKPGVGAGHGGDPKLSPH-------KVQGRSEAGAGPGPKQGHHSSSDSSSS 58
G+ P+ + G G+GH H GR +G+G GHH SS SS
Sbjct: 2295 GSGQSPSRGRHGSGSGHSSS--YGQHGSGSGWSSSSGRHGSGSGQSSGFGHHESSSWQSS 2352
Query: 59 SSDSDTDVKSHAAGSKQHESIPGKAKK 85
H++ +QH S G++ +
Sbjct: 2353 GYTQHGSGSGHSSSYEQHGSRSGQSSR 2379
Score = 33.1 bits (74), Expect = 0.050
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 6 GAALEPTSQKPGVGAGHGGD-----PKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSS 60
G+ P+ + G G+GH S +G E+G+G G H S SS
Sbjct: 302 GSRQSPSHVRHGSGSGHSSSHGQHGSGSSYSYSRGHYESGSGQTSGFGQHESGSGQSSGY 361
Query: 61 DSDTDVKSHAAGSKQHESIPGKA 83
H++ QH S G+A
Sbjct: 362 SKHGSGSGHSSSQGQHGSTSGQA 384
Score = 33.1 bits (74), Expect = 0.050
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 12 TSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAA 71
+SQ G G G + H G+ +G+ P G H S SSSS ++
Sbjct: 1109 SSQSSGYGRQGSGSGQSPGH---GQRGSGSRQSPSYGRHGSGSGRSSSSGQHGSGLGESS 1165
Query: 72 GSKQHESIPGKA 83
G HES G++
Sbjct: 1166 GFGHHESSSGQS 1177
Score = 33.1 bits (74), Expect = 0.050
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 12 TSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAA 71
+SQ G G G + H G+ +G+ P G H S SSSS ++
Sbjct: 1579 SSQSSGYGRQGSGSGQSPGH---GQRGSGSRQSPSYGRHGSGSGRSSSSGQHGSGLGESS 1635
Query: 72 GSKQHESIPGKA 83
G HES G++
Sbjct: 1636 GFGHHESSSGQS 1647
Score = 33.1 bits (74), Expect = 0.050
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 20 AGHGGDPKLSPHKV-QGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHES 78
+GHG S H +GR +G+G G H S SSS H++ QHES
Sbjct: 2170 SGHGRQGSGSGHSPSRGRHGSGSGHSSSHGQHGSGSGRSSSRGPYESRSGHSSVFGQHES 2229
Query: 79 IPG 81
G
Sbjct: 2230 GSG 2232
Score = 33.1 bits (74), Expect = 0.050
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 12 TSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAA 71
+SQ G G G + H G+ +G+ P G H S SSSS ++
Sbjct: 2519 SSQSSGYGRQGSGSGQSPGH---GQRGSGSRQSPSYGRHGSGSGRSSSSGQHGSGLGESS 2575
Query: 72 GSKQHESIPGKA 83
G HES G++
Sbjct: 2576 GFGHHESSSGQS 2587
Score = 32.7 bits (73), Expect = 0.065
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 19 GAGHGGDPKLSPH-KVQGRSEA----GAGPGPKQG--HHSSSDSSSSSSDSDTDVKSHAA 71
G+G G P H G+S + G+G G G H SS SS H++
Sbjct: 196 GSGSGQSPNYGQHGSGSGQSSSNDTHGSGSGQSSGFSQHKSSSGQSSGYSQHGSGSGHSS 255
Query: 72 GSKQHESIPGKAKKPKVKKKEKG 94
G QH S G++ + + + G
Sbjct: 256 GYGQHGSRSGQSSRGERHRSSSG 278
Score = 32.7 bits (73), Expect = 0.065
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 12 TSQKPGVG---AGHGGDPKLSPH-------KVQGRSEAGAGPGPKQGHHSSSDSSSSSSD 61
+ Q PG G +G G P H GR +G+G GH SSS SS +
Sbjct: 887 SGQSPGHGQRGSGSGQSPSYGRHGSGSGRSSSSGRHGSGSGQSSGFGHKSSSGQSSGYTQ 946
Query: 62 SDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKG 94
+ H++ +QH S G++ + + G
Sbjct: 947 HGSG-SGHSSSYEQHGSRSGQSSRSEQHGSSSG 978
Score = 32.7 bits (73), Expect = 0.065
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 12 TSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAA 71
+SQ G G G + H G+ +G+ P G H S SSSS ++
Sbjct: 2049 SSQSSGYGRQGSGSGQSPGH---GQRGSGSRQSPSYGRHGSGSGRSSSSGQHGPGLGESS 2105
Query: 72 GSKQHESIPGKA 83
G HES G++
Sbjct: 2106 GFGHHESSSGQS 2117
Score = 32.3 bits (72), Expect = 0.085
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 15 KPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSK 74
+ G G+GH SP +V R + +G G H S S SSS A+G
Sbjct: 767 RQGSGSGH------SPSRV--RHGSSSGHSSSHGQHGSGTSCSSSCGHYESGSGQASGFG 818
Query: 75 QHESIPGK 82
QHES G+
Sbjct: 819 QHESGSGQ 826
Score = 32.3 bits (72), Expect = 0.085
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 17/98 (17%)
Query: 6 GAALEPTSQKPGVGAGH--GGDPKLSPHKVQGRSEAGAGPG---------PKQGHHSSSD 54
G+ +S + G G+G G K S + G ++ G+G G + G S S+
Sbjct: 912 GSGRSSSSGRHGSGSGQSSGFGHKSSSGQSSGYTQHGSGSGHSSSYEQHGSRSGQSSRSE 971
Query: 55 SSSSSSDSDTDVKSHAAGSK------QHESIPGKAKKP 86
SSS S + H +GS+ QH S G++ P
Sbjct: 972 QHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSPSP 1009
Score = 32.3 bits (72), Expect = 0.085
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 20 AGHGGDPKLSPHKV-QGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHES 78
+GHG S H +GR +G G G H S SSS H++ QHES
Sbjct: 1230 SGHGRQGSGSGHSPSRGRHGSGLGHSSSHGQHGSGSGRSSSRGPYESRSGHSSVFGQHES 1289
Query: 79 IPG 81
G
Sbjct: 1290 GSG 1292
Score = 32.3 bits (72), Expect = 0.085
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 6 GAALEPTSQKPGVGAGHGGDPKLSPH-------KVQGRSEAGAGPGPKQGHHSSSDSSSS 58
G+ P+ + G+G G SP+ +G E+G+G GH S SS
Sbjct: 2412 GSGQSPSPSRGRHGSGSGQSSSYSPYGSGSGWSSSRGPYESGSGHSSGLGHRESRSGQSS 2471
Query: 59 SSDSDTDVKSHAAGSKQHESIPGKA 83
H++ QH S G++
Sbjct: 2472 GYGQHGSSSGHSSTHGQHGSTSGQS 2496
Score = 31.6 bits (70), Expect = 0.14
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 14/84 (16%)
Query: 6 GAALEPTSQKPGVGAGHGGDPKLSPHK-----VQGRSEAGAGPGPKQG---HHSSSDSSS 57
G+ +S G+G G S HK G S+ G+G G G H S S SS
Sbjct: 209 GSGSGQSSSNDTHGSGSGQSSGFSQHKSSSGQSSGYSQHGSGSGHSSGYGQHGSRSGQSS 268
Query: 58 ------SSSDSDTDVKSHAAGSKQ 75
SSS S + H +GS+Q
Sbjct: 269 RGERHRSSSGSSSSYGQHGSGSRQ 292
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/62 (29%), Positives = 25/62 (40%)
Query: 22 HGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPG 81
HG SP +GR E+G+ G H SSS H++G ES G
Sbjct: 533 HGSGSGQSPSPSRGRHESGSRQSSSYGPHGYGSGRSSSRGPYESGSGHSSGLGHQESRSG 592
Query: 82 KA 83
++
Sbjct: 593 QS 594
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 6 GAALEPTSQKPGVGAGHGGDPKLSPHKV-------QGRSEAGAGPGPKQGHHSSSDSSSS 58
G+ P+ + G+G G P++ +G E+G+G GH S SS
Sbjct: 1002 GSGQSPSPSRGRHGSGSGQSSSYGPYRSGSGWSSSRGPYESGSGHSSGLGHRESRSGQSS 1061
Query: 59 SSDSDTDVKSHAAGSKQHESIPGKA 83
H++ QH S G++
Sbjct: 1062 GYGQHGSSSGHSSTHGQHGSTSGQS 1086
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 21 GHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIP 80
GH G S GR AG+G P +G H S SSS ++ S +H S
Sbjct: 1337 GHRGSGS-SQSSGYGRHGAGSGQSPSRGRHGSGSGHSSSYGQHGSGSGWSSSSGRHGSGS 1395
Query: 81 GKA 83
G++
Sbjct: 1396 GQS 1398
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 12 TSQKPGVGAG-HGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHA 70
+ + +G G HG SP +GR +G+G G + S SSS H+
Sbjct: 1928 SGSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYGPYGSGSGWSSSRGPYESGSGHS 1987
Query: 71 AGSKQHESIPGKA 83
+G ES G++
Sbjct: 1988 SGLGHRESRSGQS 2000
Score = 31.2 bits (69), Expect = 0.19
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 12 TSQKPGVGAG-HGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHA 70
+ + +G G HG SP +GR +G+G G + S SSS H+
Sbjct: 988 SGSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYGPYRSGSGWSSSRGPYESGSGHS 1047
Query: 71 AGSKQHESIPGKA 83
+G ES G++
Sbjct: 1048 SGLGHRESRSGQS 1060
Score = 31.2 bits (69), Expect = 0.19
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 19 GAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHES 78
G+G G P +GR +G G G H S SSS H++ QHES
Sbjct: 1706 GSGSGQSPS------RGRHGSGLGHSSSHGQHGSGSGRSSSRGPYESRSGHSSVFGQHES 1759
Query: 79 IPG 81
G
Sbjct: 1760 GSG 1762
Score = 30.8 bits (68), Expect = 0.25
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 19 GAGHGGDPKLSPH-KVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHE 77
G+G G PH V G+S +G G K G SS S S S SH++G ++H
Sbjct: 679 GSGSGWSSSNGPHGSVSGQS---SGFGHKSGSGQSSGYSQHGSGS-----SHSSGYRKHG 730
Query: 78 SIPGKAKKPKVKKKEKG 94
S G++ + + G
Sbjct: 731 SRSGQSSRSEQHGSSSG 747
Score = 30.8 bits (68), Expect = 0.25
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 12 TSQKPGVGAG-HGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHA 70
+ + +G G HG SP +GR +G+G + S SSS SH+
Sbjct: 1458 SGSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYSPYGSGSGWSSSRGPYESGSSHS 1517
Query: 71 AGSKQHESIPGKA 83
+G ES G++
Sbjct: 1518 SGLGHRESRSGQS 1530
Score = 30.8 bits (68), Expect = 0.25
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 6 GAALEPTSQKPGVGAGHGGDPKLSPH-------KVQGRSEAGAGPGPKQGHHSSSDSSSS 58
G+ P+ + G+G G P+ +G E+G+G GH S SS
Sbjct: 1942 GSGQSPSPSRGRHGSGSGQSSSYGPYGSGSGWSSSRGPYESGSGHSSGLGHRESRSGQSS 2001
Query: 59 SSDSDTDVKSHAAGSKQHESIPGKA 83
H++ QH S G++
Sbjct: 2002 GYGQHGSSSGHSSTHGQHGSASGQS 2026
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 19 GAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHES 78
G+G G P +GR +G G G H S SSS H++ QHES
Sbjct: 2646 GSGSGQSPS------RGRHGSGLGHSSSHGQHGSGSGRSSSRGPYESRLGHSSVFGQHES 2699
Query: 79 IPG 81
G
Sbjct: 2700 GSG 2702
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 21 GHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIP 80
GH G S GR AG+G G H S SSS ++G QH S
Sbjct: 2747 GHRGSGS-SQSSGYGRHGAGSGQSLSHGRHGSGSGQSSSYGQHGSGSGQSSGYSQHGSGS 2805
Query: 81 GK 82
G+
Sbjct: 2806 GQ 2807
Score = 30.0 bits (66), Expect = 0.42
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 12 TSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAA 71
T Q G G + S + QG +G+G P +G H S SSS ++
Sbjct: 1800 TGQSSSHGQHGSGSSQSSSYGQQG---SGSGQSPSRGRHGSGSGHSSSYGQHGSGSGWSS 1856
Query: 72 GSKQHESIPGKA 83
S +H S G++
Sbjct: 1857 SSGRHGSGSGQS 1868
Score = 30.0 bits (66), Expect = 0.42
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 18/99 (18%)
Query: 6 GAALEPTSQKPGVGAGHG---GDPKLSPHKVQGRSEAGAGPG---------PKQGHHSSS 53
G+ +S + G G+G G + S + G ++ G+G G + G S
Sbjct: 1851 GSGWSSSSGRHGSGSGQSSGFGHHESSSWQSSGYTQHGSGSGHSSSYEQHGSRSGQSSRG 1910
Query: 54 DSSSSSSDSDTDVKSHAAGSK------QHESIPGKAKKP 86
+ SSS S + H +GS+ QH S G++ P
Sbjct: 1911 EQHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSPSP 1949
Score = 30.0 bits (66), Expect = 0.42
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 16 PGVGAGHG-GDPKLSPHKVQGRSEAGAGPGPKQG---HHSSSDSSS------SSSDSDTD 65
PG+G G G + S + S+ G+G G G H S S SS SSS S +
Sbjct: 2099 PGLGESSGFGHHESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSRGERHGSSSGSSSR 2158
Query: 66 VKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKKKEAPH 106
H +GS+Q S G+ +G+ G + H
Sbjct: 2159 YGQHGSGSRQ-SSGHGRQGSGSGHSPSRGRHGSGSGHSSSH 2198
Score = 30.0 bits (66), Expect = 0.42
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 12 TSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAA 71
T Q G G + S + QG +G+G P +G H S SSS ++
Sbjct: 2270 TGQSSSHGQHGSGSSQSSSYGQQG---SGSGQSPSRGRHGSGSGHSSSYGQHGSGSGWSS 2326
Query: 72 GSKQHESIPGKA 83
S +H S G++
Sbjct: 2327 SSGRHGSGSGQS 2338
Score = 29.6 bits (65), Expect = 0.55
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
Query: 22 HGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQ-----H 76
HG SP G+ +G+G P G H S SSSS H +GS Q H
Sbjct: 883 HGSGSGQSPG--HGQRGSGSGQSPSYGRHGSGSGRSSSSG------RHGSGSGQSSGFGH 934
Query: 77 ESIPGKA 83
+S G++
Sbjct: 935 KSSSGQS 941
Score = 29.6 bits (65), Expect = 0.55
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 18/99 (18%)
Query: 6 GAALEPTSQKPGVGAGHG---GDPKLSPHKVQGRSEAGAGPG---------PKQGHHSSS 53
G+ +S + G G+G G + S + G ++ G+G G + G S
Sbjct: 2321 GSGWSSSSGRHGSGSGQSSGFGHHESSSWQSSGYTQHGSGSGHSSSYEQHGSRSGQSSRG 2380
Query: 54 DSSSSSSDSDTDVKSHAAGSK------QHESIPGKAKKP 86
+ SSS S + H +GS+ QH S G++ P
Sbjct: 2381 ERHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSPSP 2419
Score = 29.3 bits (64), Expect = 0.72
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 18/99 (18%)
Query: 6 GAALEPTSQKPGVGAGHG---GDPKLSPHKVQGRSEAGAGPG---------PKQGHHSSS 53
G+ +S + G G+G G + S + G ++ G+G G + G S
Sbjct: 1381 GSGWSSSSGRHGSGSGQSSGFGHHESSSWQSSGCTQHGSGSGHSSSYEQHGSRSGQSSRG 1440
Query: 54 DSSSSSSDSDTDVKSHAAGSK------QHESIPGKAKKP 86
+ SSS S + H +GS+ QH S G++ P
Sbjct: 1441 ERHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSPSP 1479
Score = 29.3 bits (64), Expect = 0.72
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 12 TSQKPGVGAG-HGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHA 70
+ + +G G HG SP +GR +G+G + S SSS H+
Sbjct: 2398 SGSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYSPYGSGSGWSSSRGPYESGSGHS 2457
Query: 71 AGSKQHESIPGKA 83
+G ES G++
Sbjct: 2458 SGLGHRESRSGQS 2470
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 22 HG-GDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIP 80
HG G + S H GR +G+G P + H SS SSS S ++ +ES
Sbjct: 755 HGSGSHQSSGH---GRQGSGSGHSPSRVRHGSSSGHSSSHGQHGSGTSCSSSCGHYESGS 811
Query: 81 GKA 83
G+A
Sbjct: 812 GQA 814
Score = 28.5 bits (62), Expect = 1.2
Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 13/113 (11%)
Query: 6 GAALEPTSQKPGVGAGHG---GDPKLSPHKVQGRSEAGAGPGPKQG---HHSSSDSSS-- 57
G+ +S + G G G G + S + S+ G+G G G H S S SS
Sbjct: 2557 GSGRSSSSGQHGSGLGESSGFGHHESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSRG 2616
Query: 58 ----SSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKKKEAPH 106
SSS S + H +GS+Q S G+ + +G+ G + H
Sbjct: 2617 ERHGSSSGSSSHYGQHGSGSRQ-SSGHGRQGSGSGQSPSRGRHGSGLGHSSSH 2668
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 35 GRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKA 83
G+ +G+G P +G H S SSS ++ + H S+ G++
Sbjct: 650 GQQGSGSGQSPSRGRHGSDFGHSSSYGQHGSGSGWSSSNGPHGSVSGQS 698
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 22 HGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSS 59
HG + S Q S +G P P +G H S SSS
Sbjct: 986 HGSGSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSS 1023
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 22 HGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSS 59
HG + S Q S +G P P +G H S SSS
Sbjct: 1456 HGSGSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSS 1493
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 22 HGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSS 59
HG + S Q S +G P P +G H S SSS
Sbjct: 1926 HGSGSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSS 1963
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 22 HGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSS 59
HG + S Q S +G P P +G H S SSS
Sbjct: 2396 HGSGSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSS 2433
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 35 GRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHES 78
G+ E+G+G H S SSS A+ S QH S
Sbjct: 349 GQHESGSGQSSGYSKHGSGSGHSSSQGQHGSTSGQASSSGQHGS 392
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 35 GRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKA 83
G+ E+G+G G Q +S SS T +S ++G QH+S G++
Sbjct: 818 GQHESGSGQGYSQHGSASGHFSSQGRHGSTSGQSSSSG--QHDSSSGQS 864
Score = 27.7 bits (60), Expect = 2.1
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 6 GAALEPTSQKPGVGAGHG---GDPKLSPHKVQGRSEAGAGPGPKQG---HHSSSDSSS-- 57
G+ +S + G G G G + S + S+ G+G G G H S S SS
Sbjct: 1147 GSGRSSSSGQHGSGLGESSGFGHHESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSRG 1206
Query: 58 ----SSSDSDTDVKSHAAGSKQ 75
SSS S + H +GS+Q
Sbjct: 1207 ERHGSSSGSSSHYGQHGSGSRQ 1228
Score = 27.7 bits (60), Expect = 2.1
Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 13/113 (11%)
Query: 6 GAALEPTSQKPGVGAGHG---GDPKLSPHKVQGRSEAGAGPGPKQG---HHSSSDSSS-- 57
G+ +S + G G G G + S + S+ G+G G G H S S SS
Sbjct: 1617 GSGRSSSSGQHGSGLGESSGFGHHESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSRG 1676
Query: 58 ----SSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKKKEAPH 106
SSS S + H +GS+Q S G+ + +G+ G + H
Sbjct: 1677 ERHGSSSRSSSRYGQHGSGSRQ-SSGHGRQGSGSGQSPSRGRHGSGLGHSSSH 1728
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 22 HG-GDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIP 80
HG G + S H GR +G+G P +G H S SSS ++ +ES
Sbjct: 1692 HGSGSRQSSGH---GRQGSGSGQSPSRGRHGSGLGHSSSHGQHGSGSGRSSSRGPYESRS 1748
Query: 81 G 81
G
Sbjct: 1749 G 1749
Score = 26.9 bits (58), Expect = 3.6
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 34 QGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKA 83
+G E+G+G GH S SS H++ QH S G++
Sbjct: 571 RGPYESGSGHSSGLGHQESRSGQSSGYGQHGSSSGHSSTHGQHGSTSGQS 620
Score = 26.9 bits (58), Expect = 3.6
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 22 HG-GDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHES 78
HG G + S H GR +G+G P +G H S SSS H +GS + S
Sbjct: 2632 HGSGSRQSSGH---GRQGSGSGQSPSRGRHGSGLGHSSSHG------QHGSGSGRSSS 2680
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 22 HGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSS 59
HG + S + S +G P P +G H S SSS
Sbjct: 520 HGSGSRQSLGHSRHGSGSGQSPSPSRGRHESGSRQSSS 557
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 15 KPGVGAGHGGDPKLSPHK-VQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGS 73
+ G +G+G S H G+ + +G G H +S SSS S ++G
Sbjct: 1996 RSGQSSGYGQHGSSSGHSSTHGQHGSASGQSSSCGQHGASSGQSSSHGQHGSGSSQSSGY 2055
Query: 74 KQHESIPGKAKKPKVKKKEKGKKE 97
+ S G + P ++ G ++
Sbjct: 2056 GRQGS--GSGQSPGHGQRGSGSRQ 2077
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 6 GAALEPTSQKPGVGAGHGGD-----PKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSS 60
G+ P+ + G G+GH +G E+ +G G H S SS+
Sbjct: 2178 GSGHSPSRGRHGSGSGHSSSHGQHGSGSGRSSSRGPYESRSGHSSVFGQHESGSGHSSAY 2237
Query: 61 DSDTDVKSHAAGSKQHESIPGKA 83
H QH S G++
Sbjct: 2238 SQHGSGSGHFCSQGQHGSTSGQS 2260
Score = 26.2 bits (56), Expect = 6.1
Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 5/83 (6%)
Query: 6 GAALEPTSQKPGVGAGHGGD-----PKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSS 60
G+ P+ + G G GH +G E+ +G G H S SS+
Sbjct: 1708 GSGQSPSRGRHGSGLGHSSSHGQHGSGSGRSSSRGPYESRSGHSSVFGQHESGSGHSSAY 1767
Query: 61 DSDTDVKSHAAGSKQHESIPGKA 83
H QH S G++
Sbjct: 1768 SQHGSGSGHFCSQGQHGSTSGQS 1790
Score = 26.2 bits (56), Expect = 6.1
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 20/93 (21%)
Query: 6 GAALEPTSQKPGVGAGHGGDPKLSPHK-------VQGRSEAGAGPGP------------- 45
G+ L +S G+G G P++ V G+ E+G+G
Sbjct: 1719 GSGLGHSSSHGQHGSGSGRSSSRGPYESRSGHSSVFGQHESGSGHSSAYSQHGSGSGHFC 1778
Query: 46 KQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHES 78
QG H S+ SS+ D + ++ QH S
Sbjct: 1779 SQGQHGSTSGQSSTFDQEGSSTGQSSSHGQHGS 1811
Score = 25.8 bits (55), Expect = 7.9
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 6 GAALEPTSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTD 65
G+ L +S G+G G P+ E+ +G G H S SS+
Sbjct: 1249 GSGLGHSSSHGQHGSGSGRSSSRGPY------ESRSGHSSVFGQHESGSGHSSAYSQHGS 1302
Query: 66 VKSHAAGSKQHESIPGKA 83
H QH S G++
Sbjct: 1303 GSGHFCSQGQHGSTSGQS 1320
Score = 25.8 bits (55), Expect = 7.9
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 7/85 (8%)
Query: 6 GAALEPTSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQ-------GHHSSSDSSSS 58
G+ P+ + G+G G SP+ + GP GH S SS
Sbjct: 1472 GSGQSPSPSRGRHGSGSGQSSSYSPYGSGSGWSSSRGPYESGSSHSSGLGHRESRSGQSS 1531
Query: 59 SSDSDTDVKSHAAGSKQHESIPGKA 83
H++ QH S G++
Sbjct: 1532 GYGQHGSSSGHSSTHGQHGSTSGQS 1556
Score = 25.8 bits (55), Expect = 7.9
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 37 SEAGAGPGP--KQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHES 78
S+ G+G G QG H S+ SS+ D + ++ QH S
Sbjct: 2238 SQHGSGSGHFCSQGQHGSTSGQSSTFDQEGSSTGQSSSHGQHGS 2281
>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
Length = 360
Score = 41.2 bits (95), Expect = 2e-04
Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 12 TSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAA 71
TSQ G + SP + RS+ A ++ SSS SSSSSS S + S ++
Sbjct: 163 TSQGRKASTAPGAEASPSPC-ITERSKQKAR---RRTRSSSSSSSSSSSSSSSSSSSSSS 218
Query: 72 GSKQHESIPGKAKKPKVKKKEKGKKEKGKKKE 103
S GK K + KKK+K KK K K KE
Sbjct: 219 SSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKE 250
Score = 38.9 bits (89), Expect = 0.001
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 51 SSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKKK 102
SSS SSSSSS S + S ++ + + K K+ K KKK K K+KGK+K
Sbjct: 200 SSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 251
>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
Length = 338
Score = 40.8 bits (94), Expect = 2e-04
Identities = 25/53 (47%), Positives = 30/53 (56%)
Query: 51 SSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKKKE 103
SSS SSSSSS S + S ++ S GK K + KKK+K KK K K KE
Sbjct: 179 SSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKE 231
Score = 39.7 bits (91), Expect = 5e-04
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 34 QGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEK 93
Q RS+ A + SSS SSSSSS S + S ++ ++ K K+ K KKK K
Sbjct: 165 QERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRG-KYKDKRRKKKKKRK 223
Query: 94 GKKEKGKKK 102
K+KGK+K
Sbjct: 224 KLKKKGKEK 232
>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
Length = 341
Score = 40.8 bits (94), Expect = 2e-04
Identities = 25/53 (47%), Positives = 30/53 (56%)
Query: 51 SSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKKKE 103
SSS SSSSSS S + S ++ S GK K + KKK+K KK K K KE
Sbjct: 179 SSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKE 231
Score = 39.7 bits (91), Expect = 5e-04
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 34 QGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEK 93
Q RS+ A + SSS SSSSSS S + S ++ ++ K K+ K KKK K
Sbjct: 165 QERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRG-KYKDKRRKKKKKRK 223
Query: 94 GKKEKGKKK 102
K+KGK+K
Sbjct: 224 KLKKKGKEK 232
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 39.7 bits (91), Expect = 5e-04
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 4 DLGAALEPTSQKPG-VGAGHGGDPKLSPHKVQ-------GRSEAGAGPGPKQGHHSSSDS 55
D AA P S+K +GAG GG+ +SP K R +A K+G S
Sbjct: 1276 DQPAARTPRSKKKKKLGAGEGGEASVSPEKTSTTSKGKAKRDKASGDVKEKKGKGSLGSQ 1335
Query: 56 SSSSSDSDTDVKSHAAGSKQHESIP-GKAKKPKVKKKEKGKKEKGKKKEA 104
+ + K +S P K +K K K++K K++K KKK+A
Sbjct: 1336 GAKDEPEEELQKGMGTVEGGDQSNPKSKKEKKKSDKRKKDKEKKEKKKKA 1385
Score = 29.6 bits (65), Expect = 0.55
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 39 AGAGPG---PKQGHHSSSDSSSSSSDSDTDVKSH------AAGSKQHESIPGKAKKP 86
A A PG Q SS D+SSSS ++D +VK+ A S + PGK P
Sbjct: 184 AAAKPGMVSAGQADSSSEDTSSSSDETDVEVKASEKILQVRAASAPAKGTPGKGATP 240
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 2 EFDLGAALEPTSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSS-----DSS 56
E D E +Q G H L+P K R A P K G ++ DS
Sbjct: 797 ESDSEEEAETLAQVKPSGKTHQIRAALAPAKESPRKGAAPTPPGKTGPSAAQAGKQDDSG 856
Query: 57 SSSSDSDTDVKSHAA 71
SSS +SD+D ++ AA
Sbjct: 857 SSSEESDSDGEAPAA 871
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 21/94 (22%)
Query: 23 GGDPKLSPHKVQGRSEAGAGPGP------------------KQGHHSSSDSSSSSSDSDT 64
G P++ P G G G GP ++ SSS+ SS SSD +
Sbjct: 424 GKSPQVKPASTMGMGPLGKGAGPVPPGKVGPATPSAQVGKWEEDSESSSEESSDSSDGEV 483
Query: 65 DVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEK 98
A Q +S+ + KG +K
Sbjct: 484 PT---AVAPAQEKSLGNILQAKPTSSPAKGPPQK 514
Score = 26.9 bits (58), Expect = 3.6
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 16/96 (16%)
Query: 2 EFDLGAALEPTSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSS-------- 53
E + A +P+ + P V A +P K R A P K G ++
Sbjct: 343 EEEAPAQAKPSGKAPQVRAAS------APAKESPRKGAAPAPPRKTGPAAAQVQVGKQEE 396
Query: 54 DSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVK 89
DS SSS +SD+D ++ AA + GK+ P+VK
Sbjct: 397 DSRSSSEESDSDREALAAMNAAQVKPLGKS--PQVK 430
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 39.7 bits (91), Expect = 5e-04
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 4 DLGAALEPTSQKPG-VGAGHGGDPKLSPHKVQ-------GRSEAGAGPGPKQGHHSSSDS 55
D AA P S+K +GAG GG+ +SP K R +A K+G S
Sbjct: 1315 DQPAARTPRSKKKKKLGAGEGGEASVSPEKTSTTSKGKAKRDKASGDVKEKKGKGSLGSQ 1374
Query: 56 SSSSSDSDTDVKSHAAGSKQHESIP-GKAKKPKVKKKEKGKKEKGKKKEA 104
+ + K +S P K +K K K++K K++K KKK+A
Sbjct: 1375 GAKDEPEEELQKGMGTVEGGDQSNPKSKKEKKKSDKRKKDKEKKEKKKKA 1424
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 2 EFDLGAALEPTSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSS-----DSS 56
E D E +Q G H L+P K R A P K G ++ DS
Sbjct: 874 ESDSEEEAETLAQVKPSGKTHQIRAALAPAKESPRKGAAPTPPGKTGPSAAQAGKQDDSG 933
Query: 57 SSSSDSDTDVKSHAA 71
SSS +SD+D ++ AA
Sbjct: 934 SSSEESDSDGEAPAA 948
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 21/94 (22%)
Query: 23 GGDPKLSPHKVQGRSEAGAGPGP------------------KQGHHSSSDSSSSSSDSDT 64
G P++ P G G G GP ++ SSS+ SS SSD +
Sbjct: 501 GKSPQVKPASTMGMGPLGKGAGPVPPGKVGPATPSAQVGKWEEDSESSSEESSDSSDGEV 560
Query: 65 DVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEK 98
A Q +S+ + KG +K
Sbjct: 561 PT---AVAPAQEKSLGNILQAKPTSSPAKGPPQK 591
Score = 26.9 bits (58), Expect = 3.6
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 16/96 (16%)
Query: 2 EFDLGAALEPTSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSS-------- 53
E + A +P+ + P V A +P K R A P K G ++
Sbjct: 420 EEEAPAQAKPSGKAPQVRAAS------APAKESPRKGAAPAPPRKTGPAAAQVQVGKQEE 473
Query: 54 DSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVK 89
DS SSS +SD+D ++ AA + GK+ P+VK
Sbjct: 474 DSRSSSEESDSDREALAAMNAAQVKPLGKS--PQVK 507
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 16/70 (22%)
Query: 39 AGAGPG---PKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGK 95
A A PG Q SS D+SSSS ++D + K K +VK
Sbjct: 184 AAAKPGMVSAGQADSSSEDTSSSSDETDVEGKP-------------SVKPAQVKASSVST 230
Query: 96 KEKGKKKEAP 105
KE +K AP
Sbjct: 231 KESPARKAAP 240
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 39.7 bits (91), Expect = 5e-04
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 4 DLGAALEPTSQKPG-VGAGHGGDPKLSPHKVQ-------GRSEAGAGPGPKQGHHSSSDS 55
D AA P S+K +GAG GG+ +SP K R +A K+G S
Sbjct: 1352 DQPAARTPRSKKKKKLGAGEGGEASVSPEKTSTTSKGKAKRDKASGDVKEKKGKGSLGSQ 1411
Query: 56 SSSSSDSDTDVKSHAAGSKQHESIP-GKAKKPKVKKKEKGKKEKGKKKEA 104
+ + K +S P K +K K K++K K++K KKK+A
Sbjct: 1412 GAKDEPEEELQKGMGTVEGGDQSNPKSKKEKKKSDKRKKDKEKKEKKKKA 1461
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 2 EFDLGAALEPTSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSS-----DSS 56
E D E +Q G H L+P K R A P K G ++ DS
Sbjct: 874 ESDSEEEAETLAQVKPSGKTHQIRAALAPAKESPRKGAAPTPPGKTGPSAAQAGKQDDSG 933
Query: 57 SSSSDSDTDVKSHAA 71
SSS +SD+D ++ AA
Sbjct: 934 SSSEESDSDGEAPAA 948
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 21/94 (22%)
Query: 23 GGDPKLSPHKVQGRSEAGAGPGP------------------KQGHHSSSDSSSSSSDSDT 64
G P++ P G G G GP ++ SSS+ SS SSD +
Sbjct: 501 GKSPQVKPASTMGMGPLGKGAGPVPPGKVGPATPSAQVGKWEEDSESSSEESSDSSDGEV 560
Query: 65 DVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEK 98
A Q +S+ + KG +K
Sbjct: 561 PT---AVAPAQEKSLGNILQAKPTSSPAKGPPQK 591
Score = 26.9 bits (58), Expect = 3.6
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 16/96 (16%)
Query: 2 EFDLGAALEPTSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSS-------- 53
E + A +P+ + P V A +P K R A P K G ++
Sbjct: 420 EEEAPAQAKPSGKAPQVRAAS------APAKESPRKGAAPAPPRKTGPAAAQVQVGKQEE 473
Query: 54 DSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVK 89
DS SSS +SD+D ++ AA + GK+ P+VK
Sbjct: 474 DSRSSSEESDSDREALAAMNAAQVKPLGKS--PQVK 507
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 16/70 (22%)
Query: 39 AGAGPG---PKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGK 95
A A PG Q SS D+SSSS ++D + K K +VK
Sbjct: 184 AAAKPGMVSAGQADSSSEDTSSSSDETDVEGKP-------------SVKPAQVKASSVST 230
Query: 96 KEKGKKKEAP 105
KE +K AP
Sbjct: 231 KESPARKAAP 240
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b [Homo
sapiens]
Length = 1411
Score = 39.7 bits (91), Expect = 5e-04
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 4 DLGAALEPTSQKPG-VGAGHGGDPKLSPHKVQ-------GRSEAGAGPGPKQGHHSSSDS 55
D AA P S+K +GAG GG+ +SP K R +A K+G S
Sbjct: 1275 DQPAARTPRSKKKKKLGAGEGGEASVSPEKTSTTSKGKAKRDKASGDVKEKKGKGSLGSQ 1334
Query: 56 SSSSSDSDTDVKSHAAGSKQHESIP-GKAKKPKVKKKEKGKKEKGKKKEA 104
+ + K +S P K +K K K++K K++K KKK+A
Sbjct: 1335 GAKDEPEEELQKGMGTVEGGDQSNPKSKKEKKKSDKRKKDKEKKEKKKKA 1384
Score = 29.6 bits (65), Expect = 0.55
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 39 AGAGPG---PKQGHHSSSDSSSSSSDSDTDVKSH------AAGSKQHESIPGKAKKP 86
A A PG Q SS D+SSSS ++D +VK+ A S + PGK P
Sbjct: 184 AAAKPGMVSAGQADSSSEDTSSSSDETDVEVKASEKILQVRAASAPAKGTPGKGATP 240
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 2 EFDLGAALEPTSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSS-----DSS 56
E D E +Q G H L+P K R A P K G ++ DS
Sbjct: 797 ESDSEEEAETLAQVKPSGKTHQIRAALAPAKESPRKGAAPTPPGKTGPSAAQAGKQDDSG 856
Query: 57 SSSSDSDTDVKSHAA 71
SSS +SD+D ++ AA
Sbjct: 857 SSSEESDSDGEAPAA 871
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 21/94 (22%)
Query: 23 GGDPKLSPHKVQGRSEAGAGPGP------------------KQGHHSSSDSSSSSSDSDT 64
G P++ P G G G GP ++ SSS+ SS SSD +
Sbjct: 424 GKSPQVKPASTMGMGPLGKGAGPVPPGKVGPATPSAQVGKWEEDSESSSEESSDSSDGEV 483
Query: 65 DVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEK 98
A Q +S+ + KG +K
Sbjct: 484 PT---AVAPAQEKSLGNILQAKPTSSPAKGPPQK 514
Score = 26.9 bits (58), Expect = 3.6
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 16/96 (16%)
Query: 2 EFDLGAALEPTSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSS-------- 53
E + A +P+ + P V A +P K R A P K G ++
Sbjct: 343 EEEAPAQAKPSGKAPQVRAAS------APAKESPRKGAAPAPPRKTGPAAAQVQVGKQEE 396
Query: 54 DSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVK 89
DS SSS +SD+D ++ AA + GK+ P+VK
Sbjct: 397 DSRSSSEESDSDREALAAMNAAQVKPLGKS--PQVK 430
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a [Homo
sapiens]
Length = 1450
Score = 39.7 bits (91), Expect = 5e-04
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 4 DLGAALEPTSQKPG-VGAGHGGDPKLSPHKVQ-------GRSEAGAGPGPKQGHHSSSDS 55
D AA P S+K +GAG GG+ +SP K R +A K+G S
Sbjct: 1314 DQPAARTPRSKKKKKLGAGEGGEASVSPEKTSTTSKGKAKRDKASGDVKEKKGKGSLGSQ 1373
Query: 56 SSSSSDSDTDVKSHAAGSKQHESIP-GKAKKPKVKKKEKGKKEKGKKKEA 104
+ + K +S P K +K K K++K K++K KKK+A
Sbjct: 1374 GAKDEPEEELQKGMGTVEGGDQSNPKSKKEKKKSDKRKKDKEKKEKKKKA 1423
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 2 EFDLGAALEPTSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSS-----DSS 56
E D E +Q G H L+P K R A P K G ++ DS
Sbjct: 874 ESDSEEEAETLAQVKPSGKTHQIRAALAPAKESPRKGAAPTPPGKTGPSAAQAGKQDDSG 933
Query: 57 SSSSDSDTDVKSHAA 71
SSS +SD+D ++ AA
Sbjct: 934 SSSEESDSDGEAPAA 948
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 21/94 (22%)
Query: 23 GGDPKLSPHKVQGRSEAGAGPGP------------------KQGHHSSSDSSSSSSDSDT 64
G P++ P G G G GP ++ SSS+ SS SSD +
Sbjct: 501 GKSPQVKPASTMGMGPLGKGAGPVPPGKVGPATPSAQVGKWEEDSESSSEESSDSSDGEV 560
Query: 65 DVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEK 98
A Q +S+ + KG +K
Sbjct: 561 PT---AVAPAQEKSLGNILQAKPTSSPAKGPPQK 591
Score = 26.9 bits (58), Expect = 3.6
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 16/96 (16%)
Query: 2 EFDLGAALEPTSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSS-------- 53
E + A +P+ + P V A +P K R A P K G ++
Sbjct: 420 EEEAPAQAKPSGKAPQVRAAS------APAKESPRKGAAPAPPRKTGPAAAQVQVGKQEE 473
Query: 54 DSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVK 89
DS SSS +SD+D ++ AA + GK+ P+VK
Sbjct: 474 DSRSSSEESDSDREALAAMNAAQVKPLGKS--PQVK 507
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 16/70 (22%)
Query: 39 AGAGPG---PKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGK 95
A A PG Q SS D+SSSS ++D + K K +VK
Sbjct: 184 AAAKPGMVSAGQADSSSEDTSSSSDETDVEGKP-------------SVKPAQVKASSVST 230
Query: 96 KEKGKKKEAP 105
KE +K AP
Sbjct: 231 KESPARKAAP 240
>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens]
Length = 1758
Score = 39.7 bits (91), Expect = 5e-04
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 42 GPGPKQGHHSSSDSSSSS-SDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGK 100
G Q H S S S S S S S + +SH++ + ES K KK K K+K+K KK K
Sbjct: 1652 GISRNQSHSSPSVSPSRSHSPSGSQTRSHSSSASSAESQDSKKKKKK-KEKKKHKKHKKH 1710
Query: 101 KKEAPH 106
KK H
Sbjct: 1711 KKHKKH 1716
Score = 31.6 bits (70), Expect = 0.14
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 29 SPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDT-----DVKSHAAGSK--QHESIPG 81
SP RS + +G + HSSS SS+ S DS + K H K +H+ G
Sbjct: 1661 SPSVSPSRSHSPSGSQTRS--HSSSASSAESQDSKKKKKKKEKKKHKKHKKHKKHKKHAG 1718
Query: 82 KAKKPKVKKKEKGKKEKGKKKE 103
+ + +K K KK+K KK +
Sbjct: 1719 TEVELEKSQKHKHKKKKSKKNK 1740
Score = 29.6 bits (65), Expect = 0.55
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 36 RSEAGAGPGPKQGHHSSSDSSSSSSDSDTDV-----KSHAAGSKQH-ESIPGKAKKPKVK 89
RSE ++ + + SSSSS D + K+H+ +K+H E+ P K +K K
Sbjct: 1020 RSEPPIKKAKEETPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKD 1079
Query: 90 KKEKGKKEKGKKKE 103
+ K EK KE
Sbjct: 1080 YSKDVKSEKLTTKE 1093
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens]
Length = 1792
Score = 39.7 bits (91), Expect = 5e-04
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 42 GPGPKQGHHSSSDSSSSS-SDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGK 100
G Q H S S S S S S S + +SH++ + ES K KK K K+K+K KK K
Sbjct: 1686 GISRNQSHSSPSVSPSRSHSPSGSQTRSHSSSASSAESQDSKKKKKK-KEKKKHKKHKKH 1744
Query: 101 KKEAPH 106
KK H
Sbjct: 1745 KKHKKH 1750
Score = 31.6 bits (70), Expect = 0.14
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 29 SPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDT-----DVKSHAAGSK--QHESIPG 81
SP RS + +G + HSSS SS+ S DS + K H K +H+ G
Sbjct: 1695 SPSVSPSRSHSPSGSQTRS--HSSSASSAESQDSKKKKKKKEKKKHKKHKKHKKHKKHAG 1752
Query: 82 KAKKPKVKKKEKGKKEKGKKKE 103
+ + +K K KK+K KK +
Sbjct: 1753 TEVELEKSQKHKHKKKKSKKNK 1774
Score = 29.6 bits (65), Expect = 0.55
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 36 RSEAGAGPGPKQGHHSSSDSSSSSSDSDTDV-----KSHAAGSKQH-ESIPGKAKKPKVK 89
RSE ++ + + SSSSS D + K+H+ +K+H E+ P K +K K
Sbjct: 1054 RSEPPIKKAKEETPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKD 1113
Query: 90 KKEKGKKEKGKKKE 103
+ K EK KE
Sbjct: 1114 YSKDVKSEKLTTKE 1127
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 39.3 bits (90), Expect = 7e-04
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 46 KQGHHSSSDSSSSSSDSD-----TDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGK 100
+Q SSSDS SSSS D + VK+ G ++ S P ++ P +K++K +G+
Sbjct: 487 RQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHS-PSRSASPSPRKRQKETSPRGR 545
Query: 101 KKEAP 105
++ +P
Sbjct: 546 RRRSP 550
Score = 26.9 bits (58), Expect = 3.6
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 29 SPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKV 88
S V G E A P S S S++ VK A S P + +
Sbjct: 749 SSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPVKK-AKSPTPSPSPPRNSDQEGG 807
Query: 89 KKKEKGKKEKGKKKEAPH 106
KK+K KK+K KK+ H
Sbjct: 808 GKKKKKKKDKKHKKDKKH 825
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 17/83 (20%)
Query: 41 AGPGPKQGHHSSSDSSSSSSDSD---------TDVKSHAAGSKQHESIPGKAKK------ 85
A P P+ SS S S S + V+S + + ++P K K
Sbjct: 737 ASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPVKKAKSPTPSP 796
Query: 86 --PKVKKKEKGKKEKGKKKEAPH 106
P+ +E G K+K KKK+ H
Sbjct: 797 SPPRNSDQEGGGKKKKKKKDKKH 819
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 38.1 bits (87), Expect = 0.002
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 41 AGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGK 100
A P+ SSSDS SSSS+ + + S +A K+ + + G A K +KGK E
Sbjct: 459 AKQAPQGSRDSSSDSDSSSSEEEEEKTSKSAVKKKPQKVAGGAAPSKPASAKKGKAESSN 518
Query: 101 KKEA 104
+
Sbjct: 519 SSSS 522
Score = 34.7 bits (78), Expect = 0.017
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 26 PKLSPHKVQGRSE-----AGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIP 80
PK++P V+ +++ A A P G +SS SSSSSS S D + A + +++P
Sbjct: 185 PKITPVTVKAQTKAPPKPARAAPKIANGKAASSSSSSSSSSSSDDSEEEKAAATPKKTVP 244
Query: 81 GK---AKKP 86
K AK P
Sbjct: 245 KKQVVAKAP 253
Score = 33.1 bits (74), Expect = 0.050
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 37 SEAGAGPGP-KQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGK 95
S+A P P K+ SSSDSS S S D + S AG+ ++ S KP V K
Sbjct: 346 SKATTKPPPAKKAAESSSDSSDSDSSEDDEAPSKPAGTTKNSS-----NKPAVTTKSPAV 400
Query: 96 KEKGKKKE 103
K K+
Sbjct: 401 KPAAAPKQ 408
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 27 KLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKP 86
K P KV G + K+G SS+SSSS S+ + + P KA
Sbjct: 491 KKKPQKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEEEEEKLKGKGSPRPQAP-KANGT 549
Query: 87 KVKKKEKGKKEKGKKKE 103
+ GK K ++E
Sbjct: 550 SALTAQNGKAAKNSEEE 566
Score = 28.5 bits (62), Expect = 1.2
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 4/99 (4%)
Query: 10 EPTSQKPGVGAGHGGDPKLSPHKVQGRS---EAGAGPGPKQGHHSSSDSSSSSSDSDTDV 66
+P KPG + P K G +A P + SSD S SSS+ +
Sbjct: 280 KPMKNKPGPYSSVPPPSAPPPKKSLGTQPPKKAVEKQQPVESSEDSSDESDSSSEEEKKP 339
Query: 67 KSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKKKEAP 105
+ A SK + P AKK + + + EAP
Sbjct: 340 PTKAVVSKA-TTKPPPAKKAAESSSDSSDSDSSEDDEAP 377
Score = 26.2 bits (56), Expect = 6.1
Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 40 GAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKK--PKVKKKEKGKKE 97
G PG S S SS SSD D + ++ KA K PK K +
Sbjct: 113 GLPPGKAAAKASESSSSEESSDDDDEEDQKKQPVQKGVKPQAKAAKAPPKKAKSSDSDSD 172
Query: 98 KGKKKEAP 105
+ E P
Sbjct: 173 SSSEDEPP 180
>gi|119120903 par-3 partitioning defective 3 homolog B isoform c
[Homo sapiens]
Length = 1136
Score = 38.1 bits (87), Expect = 0.002
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 8 ALEPTSQKPGVGAGHGGDPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVK 67
++ P Q + L P + + S AG Q SD SS S + +
Sbjct: 693 SVTPARQPESINLKASKSMDLVPDESKVHSLAG------QKSDGLSDKSSHSGQGALNCE 746
Query: 68 SHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKKK 102
S G+ + E + KA+K K K+++ KKEKGK K
Sbjct: 747 SAPQGNSELEDMENKARKVKKTKEKEKKKEKGKLK 781
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 28 LSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPK 87
L+ K G S+ + G QG + + +S+ + D+++ A K+ + K +K K
Sbjct: 723 LAGQKSDGLSDKSSHSG--QGALNCESAPQGNSELE-DMENKARKVKKTKEKEKKKEKGK 779
Query: 88 VKKKEKGKKEKGKKKE 103
+K KEK +KE+ + E
Sbjct: 780 LKVKEKKRKEENEDPE 795
>gi|119120907 par-3 partitioning defective 3 homolog B isoform a
[Homo sapiens]
Length = 1104
Score = 37.7 bits (86), Expect = 0.002
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 53 SDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKKK 102
SD SS S + +S G+ + E + KA+K K K+++ KKEKGK K
Sbjct: 801 SDKSSHSGQGALNCESAPQGNSELEDMENKARKVKKTKEKEKKKEKGKLK 850
>gi|119120897 par-3 partitioning defective 3 homolog B isoform b
[Homo sapiens]
Length = 1143
Score = 37.7 bits (86), Expect = 0.002
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 53 SDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKKK 102
SD SS S + +S G+ + E + KA+K K K+++ KKEKGK K
Sbjct: 739 SDKSSHSGQGALNCESAPQGNSELEDMENKARKVKKTKEKEKKKEKGKLK 788
>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
Length = 1462
Score = 37.7 bits (86), Expect = 0.002
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 43 PGPKQGHHSSSDSSSSS-SDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKK 101
P +G SSS+SSSSS S S+++++ + ++H+ P K K+ K ++KE E+ +
Sbjct: 192 PTHSEGSDSSSNSSSSSESSSESELEHERSRRRKHKRRP-KVKRSKKRRKEASSSEEPRN 250
Query: 102 KEA 104
K A
Sbjct: 251 KHA 253
Score = 33.1 bits (74), Expect = 0.050
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 46 KQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKKKEA 104
K+ + S+ S SSS+S + +S + +HE ++++ K K++ K K+ K ++KEA
Sbjct: 188 KRKKPTHSEGSDSSSNSSSSSESSSESELEHE----RSRRRKHKRRPKVKRSKKRRKEA 242
Score = 31.2 bits (69), Expect = 0.19
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
Query: 40 GAGPGPKQGHHSSSDSSSSSSDSDTD---VKSHAAGSKQHESIPGKAKKPKVKK-KEKGK 95
GA KQ S+SDS S S+S+ + + H GSK++ K+ KK KEK K
Sbjct: 946 GAWKSSKQ-RTSTSDSEGSCSNSENNRGKPQKHKHGSKEN------LKREHTKKVKEKLK 998
Query: 96 KEKGKKKEAP 105
+K KK +AP
Sbjct: 999 GKKDKKHKAP 1008
Score = 25.8 bits (55), Expect = 7.9
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Query: 62 SDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEK 98
SD H+ K+ + K+ KVK K+KGKK+K
Sbjct: 416 SDLSTARHSGHHKK------RRKEKKVKHKKKGKKQK 446
>gi|56090620 NFKB activating protein-like [Homo sapiens]
Length = 402
Score = 37.7 bits (86), Expect = 0.002
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 46 KQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKK 101
K+ + SS SDSD++ +S + KAKK K KKK K KK+K KK
Sbjct: 188 KRKNKSSKRKHRKYSDSDSNSESDTNSDSDDDKKRVKAKKKKKKKKHKTKKKKNKK 243
>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
Length = 248
Score = 37.7 bits (86), Expect = 0.002
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 51 SSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKKKE 103
SSSDSSSSSSDS+ + K K+ ++ K+ + + E KE KKK+
Sbjct: 109 SSSDSSSSSSDSEDEEKKQGKRRKKKKNRSYKSSQSSTHESESESKESVKKKK 161
Score = 33.1 bits (74), Expect = 0.050
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 53 SDSSSSSSDSDTDVKS-HAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKKKEAPH 106
S SSS SD + DV++ ++ E K KK K K+ +K K+K KK + H
Sbjct: 191 SSESSSESDYEEDVQAKKKRRCEEREQAKEKVKKKKKKQHKKHSKKKKKKSGSSH 245
Score = 32.3 bits (72), Expect = 0.085
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 17/68 (25%)
Query: 51 SSSDSSSSSSDSDTDVKSHAAG---------------SKQHESIPGKAKKPKVKKKEKGK 95
SSS S SSSS SD++ + G S HES K VKKK+K K
Sbjct: 107 SSSSSDSSSSSSDSEDEEKKQGKRRKKKKNRSYKSSQSSTHES--ESESKESVKKKKKSK 164
Query: 96 KEKGKKKE 103
E K+K+
Sbjct: 165 DETEKEKD 172
>gi|21361576 zinc finger, CCHC domain containing 17 [Homo sapiens]
Length = 241
Score = 37.4 bits (85), Expect = 0.003
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 25 DPKLSPHKVQGRSEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAK 84
DP +P + + + + K+ H S S SSDS++D A +H S KA
Sbjct: 177 DPTRNPSRKRKKEKK------KKKHRDRKSSDSDSSDSESDTGKRA----RHTSKDSKAA 226
Query: 85 KPKVKKKEKGKKEK 98
K K KKK+ KK K
Sbjct: 227 KKKKKKKKHKKKHK 240
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 16/57 (28%)
Query: 46 KQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKKK 102
K SSDS SS S+SDT GK + K + KK+K KKK
Sbjct: 194 KHRDRKSSDSDSSDSESDT----------------GKRARHTSKDSKAAKKKKKKKK 234
>gi|168229156 NFKB activating protein [Homo sapiens]
Length = 415
Score = 37.0 bits (84), Expect = 0.003
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 46 KQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKKKE 103
K+ H S+ S S SDS+TD + + ++ KAKK + KKK + KK K K+ +
Sbjct: 203 KRKHKKYSEDSDSDSDSETD-----SSDEDNKRRAKKAKKKEKKKKHRSKKYKKKRSK 255
Score = 35.4 bits (80), Expect = 0.010
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 46 KQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKKEKGKKKEA 104
K S SDS S + SD D K A +K+ E K KK + KK +K + +K +K+ +
Sbjct: 208 KYSEDSDSDSDSETDSSDEDNKRRAKKAKKKE----KKKKHRSKKYKKKRSKKSRKESS 262
>gi|149408146 TOX high mobility group box family member 2 isoform b
[Homo sapiens]
Length = 488
Score = 37.0 bits (84), Expect = 0.003
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 37 SEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKK 96
S A + P P ++ SSS+ + +++V +G K+ + PGK K KKK+K
Sbjct: 194 SIAHSSPSPPGSKSATPSPSSSTQEEESEVHFKISGEKRPSADPGKKAKNPKKKKKKDPN 253
Query: 97 EKGKKKEA 104
E K A
Sbjct: 254 EPQKPVSA 261
>gi|149408144 TOX high mobility group box family member 2 isoform a
[Homo sapiens]
Length = 506
Score = 37.0 bits (84), Expect = 0.003
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 37 SEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKK 96
S A + P P ++ SSS+ + +++V +G K+ + PGK K KKK+K
Sbjct: 185 SIAHSSPSPPGSKSATPSPSSSTQEEESEVHFKISGEKRPSADPGKKAKNPKKKKKKDPN 244
Query: 97 EKGKKKEA 104
E K A
Sbjct: 245 EPQKPVSA 252
>gi|149408141 TOX high mobility group box family member 2 isoform c
[Homo sapiens]
Length = 464
Score = 37.0 bits (84), Expect = 0.003
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 37 SEAGAGPGPKQGHHSSSDSSSSSSDSDTDVKSHAAGSKQHESIPGKAKKPKVKKKEKGKK 96
S A + P P ++ SSS+ + +++V +G K+ + PGK K KKK+K
Sbjct: 143 SIAHSSPSPPGSKSATPSPSSSTQEEESEVHFKISGEKRPSADPGKKAKNPKKKKKKDPN 202
Query: 97 EKGKKKEA 104
E K A
Sbjct: 203 EPQKPVSA 210
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.298 0.121 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,471,364
Number of Sequences: 37866
Number of extensions: 309326
Number of successful extensions: 4384
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 307
Number of HSP's that attempted gapping in prelim test: 2072
Number of HSP's gapped (non-prelim): 1914
length of query: 106
length of database: 18,247,518
effective HSP length: 76
effective length of query: 30
effective length of database: 15,369,702
effective search space: 461091060
effective search space used: 461091060
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.