Guide to the Human Genome
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Name: C19orf33 Sequence: fasta or formatted (106aa) NCBI GI: 41281603
Description:

HAI-2 related small protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5          9           2
 C cysteine            0.0          0           0
 D aspartate           5.7          6           1
 E glutamate           6.6          7           1
 F phenylalanine       0.9          1           1
 G glycine            14.2         15           2
 H histidine           6.6          7           2
 I isoleucine          0.9          1           1
 K lysine             18.9         20           3
 L leucine             2.8          3           1
 M methionine          0.9          1           1
 N asparagine          0.0          0           0
 P proline             8.5          9           1
 Q glutamine           3.8          4           1
 R arginine            0.9          1           1
 S serine             15.1         16           6
 T threonine           1.9          2           1
 V valine              3.8          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   HAI-2 related small protein 
CHD2                  0.129   chromodomain helicase DNA binding protein 2 isoform...
CHD2                  0.129   chromodomain helicase DNA binding protein 2 isoform...
PPIG                  0.103   peptidylprolyl isomerase G 
MLLT3                 0.093   myeloid/lymphoid or mixed-lineage leukemia (trithor...
ARL6IP4               0.088   SRp25 nuclear protein isoform 3 
HRNR                  0.088   hornerin 
ARL6IP4               0.082   SRp25 nuclear protein isoform 1 
ARL6IP4               0.082   SRp25 nuclear protein isoform 4 
ARL6IP4               0.082   SRp25 nuclear protein isoform 2 
TCOF1                 0.077   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.077   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.077   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.077   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.077   Treacher Collins-Franceschetti syndrome 1 isoform a ...
RBBP6                 0.077   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.077   retinoblastoma-binding protein 6 isoform 1 
SRRM1                 0.072   serine/arginine repetitive matrix 1 
NOLC1                 0.067   nucleolar and coiled-body phosphoprotein 1 
PARD3B                0.067   par-3 partitioning defective 3 homolog B isoform c ...
PARD3B                0.067   par-3 partitioning defective 3 homolog B isoform a ...
PARD3B                0.067   par-3 partitioning defective 3 homolog B isoform b ...
NKTR                  0.067   natural killer-tumor recognition sequence 
NKAPL                 0.067   NFKB activating protein-like 
FAM133A               0.067   hypothetical protein LOC286499 
ZCCHC17               0.062   zinc finger, CCHC domain containing 17 
NKAP                  0.062   NFKB activating protein 
TOX2                  0.062   TOX high mobility group box family member 2 isoform...
TOX2                  0.062   TOX high mobility group box family member 2 isoform...
TOX2                  0.062   TOX high mobility group box family member 2 isoform...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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