Search of human proteins with 40806216

Search of human proteins with 40806216

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|40806216 visual system homeobox 1 isoform b [Homo sapiens]
         (239 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|40806216 visual system homeobox 1 isoform b [Homo sapiens]         483   e-137
gi|11056038 visual system homeobox 1 isoform a [Homo sapiens]         427   e-120
gi|34365783 visual system homeobox 2 [Homo sapiens]                   116   2e-26
gi|4505619 paired box 7 isoform 1 [Homo sapiens]                       79   3e-15
gi|7524359 paired box 7 isoform 2 [Homo sapiens]                       79   3e-15
gi|207029223 paired box 7 isoform 3 [Homo sapiens]                     79   3e-15
gi|126116581 retina and anterior neural fold homeobox [Homo sapi...    77   1e-14
gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]      77   1e-14
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]                 77   2e-14
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]                  77   2e-14
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]                  77   2e-14
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]                  77   2e-14
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]                  77   2e-14
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]                   77   2e-14
gi|55743092 aristaless-like homeobox 4 [Homo sapiens]                  77   2e-14
gi|113204604 aristaless-like homeobox 3 [Homo sapiens]                 76   2e-14
gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]             75   7e-14
gi|14149760 orthopedia homeobox [Homo sapiens]                         75   7e-14
gi|189083681 paired box gene 6 isoform a [Homo sapiens]                73   2e-13
gi|4580424 paired box gene 6 isoform b [Homo sapiens]                  73   2e-13
gi|4505615 paired box gene 6 isoform a [Homo sapiens]                  73   2e-13
gi|24497589 aristaless related homeobox [Homo sapiens]                 71   7e-13
gi|14249388 retina and anterior neural fold homeobox 2 [Homo sap...    69   3e-12
gi|12707580 paired-like homeobox 2b [Homo sapiens]                     68   6e-12
gi|46249382 paired-like homeobox 2a [Homo sapiens]                     68   6e-12
gi|4557489 cone-rod homeobox protein [Homo sapiens]                    66   2e-11
gi|122937321 UNC homeobox [Homo sapiens]                               66   2e-11
gi|57232759 intestine-specific homeobox [Homo sapiens]                 66   2e-11
gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Hom...    66   2e-11
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho...    66   2e-11

>gi|40806216 visual system homeobox 1 isoform b [Homo sapiens]
          Length = 239

 Score =  483 bits (1242), Expect = e-137
 Identities = 239/239 (100%), Positives = 239/239 (100%)

Query: 1   MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV 60
           MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV
Sbjct: 1   MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV 60

Query: 61  APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL 120
           APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL
Sbjct: 61  APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL 120

Query: 121 APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE 180
           APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE
Sbjct: 121 APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE 180

Query: 181 KAFSEAHYPDVYAREMLAVKTELPEDRIQVSGVPFLRSKDTTENVSFPHSVSQSAVPSL 239
           KAFSEAHYPDVYAREMLAVKTELPEDRIQVSGVPFLRSKDTTENVSFPHSVSQSAVPSL
Sbjct: 181 KAFSEAHYPDVYAREMLAVKTELPEDRIQVSGVPFLRSKDTTENVSFPHSVSQSAVPSL 239


>gi|11056038 visual system homeobox 1 isoform a [Homo sapiens]
          Length = 365

 Score =  427 bits (1097), Expect = e-120
 Identities = 210/210 (100%), Positives = 210/210 (100%)

Query: 1   MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV 60
           MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV
Sbjct: 1   MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV 60

Query: 61  APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL 120
           APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL
Sbjct: 61  APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL 120

Query: 121 APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE 180
           APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE
Sbjct: 121 APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE 180

Query: 181 KAFSEAHYPDVYAREMLAVKTELPEDRIQV 210
           KAFSEAHYPDVYAREMLAVKTELPEDRIQV
Sbjct: 181 KAFSEAHYPDVYAREMLAVKTELPEDRIQV 210


>gi|34365783 visual system homeobox 2 [Homo sapiens]
          Length = 361

 Score =  116 bits (290), Expect = 2e-26
 Identities = 93/218 (42%), Positives = 116/218 (53%), Gaps = 32/218 (14%)

Query: 1   MTGR--DSLSDGRTSSRAL-VPGGSPRGSRPRGFAITDLLGLEAELPAP----AGPGQGS 53
           MTG+  ++LS  ++ + A    GG+P  +R  GF I ++LGL  E P+     A  G   
Sbjct: 1   MTGKAGEALSKPKSETVAKSTSGGAP--ARCTGFGIQEILGLNKEPPSSHPRAALDGLAP 58

Query: 54  GCEGPAVAPCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRG 113
           G    A +     G+ G  L      LG G L GF TQP               FL    
Sbjct: 59  GHLLAARSVLSPAGVGGMGL------LGPGGLPGFYTQPT--------------FLEVLS 98

Query: 114 PEPAAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPT-LGKRKKRRHRTVFT 172
              +  L P     A G    S + S+  ED  S DR   K++     KRKKRRHRT+FT
Sbjct: 99  DPQSVHLQPLGR--ASGPLDTSQTASSDSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFT 156

Query: 173 AHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQV 210
           ++QLEELEKAF+EAHYPDVYAREMLA+KTELPEDRIQV
Sbjct: 157 SYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQV 194


>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
          Length = 520

 Score = 79.0 bits (193), Expect = 3e-15
 Identities = 41/84 (48%), Positives = 57/84 (67%), Gaps = 3/84 (3%)

Query: 130 GRQKRSDSVS--TSDEDSQSEDRNDLKASPTLG-KRKKRRHRTVFTAHQLEELEKAFSEA 186
           G +K   S+     D+ ++ ++ +D+++ P L  KRK+RR RT FTA QLEELEKAF   
Sbjct: 180 GEKKAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERT 239

Query: 187 HYPDVYAREMLAVKTELPEDRIQV 210
           HYPD+Y RE LA +T+L E R+QV
Sbjct: 240 HYPDIYTREELAQRTKLTEARVQV 263


>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
          Length = 518

 Score = 79.0 bits (193), Expect = 3e-15
 Identities = 41/84 (48%), Positives = 57/84 (67%), Gaps = 3/84 (3%)

Query: 130 GRQKRSDSVS--TSDEDSQSEDRNDLKASPTLG-KRKKRRHRTVFTAHQLEELEKAFSEA 186
           G +K   S+     D+ ++ ++ +D+++ P L  KRK+RR RT FTA QLEELEKAF   
Sbjct: 178 GEKKAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERT 237

Query: 187 HYPDVYAREMLAVKTELPEDRIQV 210
           HYPD+Y RE LA +T+L E R+QV
Sbjct: 238 HYPDIYTREELAQRTKLTEARVQV 261


>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
          Length = 505

 Score = 79.0 bits (193), Expect = 3e-15
 Identities = 41/84 (48%), Positives = 57/84 (67%), Gaps = 3/84 (3%)

Query: 130 GRQKRSDSVS--TSDEDSQSEDRNDLKASPTLG-KRKKRRHRTVFTAHQLEELEKAFSEA 186
           G +K   S+     D+ ++ ++ +D+++ P L  KRK+RR RT FTA QLEELEKAF   
Sbjct: 180 GEKKAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERT 239

Query: 187 HYPDVYAREMLAVKTELPEDRIQV 210
           HYPD+Y RE LA +T+L E R+QV
Sbjct: 240 HYPDIYTREELAQRTKLTEARVQV 263


>gi|126116581 retina and anterior neural fold homeobox [Homo
           sapiens]
          Length = 346

 Score = 77.0 bits (188), Expect = 1e-14
 Identities = 45/114 (39%), Positives = 59/114 (51%), Gaps = 15/114 (13%)

Query: 107 PFLPPRGPEPAAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLG------ 160
           P  P  G EP+ P AP+  P     +  +       E  ++     L   P  G      
Sbjct: 74  PKAPEEGSEPSPPPAPAPAP-----EYEAPRPYCPKEPGEARPSPGLPVGPATGEAKLSE 128

Query: 161 ----KRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQV 210
               K+K RR+RT FT +QL ELE+AF ++HYPDVY+RE LA K  LPE R+QV
Sbjct: 129 EEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQV 182



 Score = 34.7 bits (78), Expect = 0.075
 Identities = 31/93 (33%), Positives = 34/93 (36%), Gaps = 22/93 (23%)

Query: 44  PAPAGPGQGSGCEGPAV-------APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAA 96
           P  AGPG G G  G A+        P PG G        G  P    L   +   PP   
Sbjct: 223 PLGAGPGSGGGPAGGALPLESWLGPPLPGGGATALQSLPGFGPPAQSLPASYTPPPPPP- 281

Query: 97  RAPCLLLADVPFL--PPRGP--EPAAPLAPSRP 125
                     PFL  PP GP  +P AP  PS P
Sbjct: 282 ----------PFLNSPPLGPGLQPLAPPPPSYP 304



 Score = 28.1 bits (61), Expect = 7.0
 Identities = 24/65 (36%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 65  GPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPLAPSR 124
           GPG  G   A GALPL   L       PP        L +   F PP    PA+   P  
Sbjct: 227 GPG-SGGGPAGGALPLESWL------GPPLPGGGATALQSLPGFGPPAQSLPASYTPPPP 279

Query: 125 PPPAL 129
           PPP L
Sbjct: 280 PPPFL 284


>gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]
          Length = 326

 Score = 77.0 bits (188), Expect = 1e-14
 Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 134 RSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYA 193
           R   V    E  + ++  D K    +   KKRRHRT FT+ QLEELEK F + HYPDVY 
Sbjct: 103 RMSPVKGMQEKGELDELGD-KCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYV 161

Query: 194 REMLAVKTELPEDRIQV 210
           RE LA++TEL E R+QV
Sbjct: 162 REQLALRTELTEARVQV 178


>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
          Length = 483

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 45/102 (44%), Positives = 60/102 (58%), Gaps = 3/102 (2%)

Query: 112 RGPEPAAPLAPSRPPPALGRQKRSDSVSTSDEDS--QSEDRNDLKASPTLG-KRKKRRHR 168
           +G E  A L       +  + K S     S+  S  QS++ +D+ + P L  KRK+RR R
Sbjct: 163 KGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSR 222

Query: 169 TVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQV 210
           T FTA QLEELE+AF   HYPD+Y RE LA + +L E R+QV
Sbjct: 223 TTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQV 264


>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
          Length = 403

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 45/102 (44%), Positives = 60/102 (58%), Gaps = 3/102 (2%)

Query: 112 RGPEPAAPLAPSRPPPALGRQKRSDSVSTSDEDS--QSEDRNDLKASPTLG-KRKKRRHR 168
           +G E  A L       +  + K S     S+  S  QS++ +D+ + P L  KRK+RR R
Sbjct: 164 KGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSR 223

Query: 169 TVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQV 210
           T FTA QLEELE+AF   HYPD+Y RE LA + +L E R+QV
Sbjct: 224 TTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQV 265


>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
          Length = 407

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 45/102 (44%), Positives = 60/102 (58%), Gaps = 3/102 (2%)

Query: 112 RGPEPAAPLAPSRPPPALGRQKRSDSVSTSDEDS--QSEDRNDLKASPTLG-KRKKRRHR 168
           +G E  A L       +  + K S     S+  S  QS++ +D+ + P L  KRK+RR R
Sbjct: 164 KGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSR 223

Query: 169 TVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQV 210
           T FTA QLEELE+AF   HYPD+Y RE LA + +L E R+QV
Sbjct: 224 TTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQV 265


>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
          Length = 505

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 45/102 (44%), Positives = 60/102 (58%), Gaps = 3/102 (2%)

Query: 112 RGPEPAAPLAPSRPPPALGRQKRSDSVSTSDEDS--QSEDRNDLKASPTLG-KRKKRRHR 168
           +G E  A L       +  + K S     S+  S  QS++ +D+ + P L  KRK+RR R
Sbjct: 164 KGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSR 223

Query: 169 TVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQV 210
           T FTA QLEELE+AF   HYPD+Y RE LA + +L E R+QV
Sbjct: 224 TTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQV 265


>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
          Length = 484

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 45/102 (44%), Positives = 60/102 (58%), Gaps = 3/102 (2%)

Query: 112 RGPEPAAPLAPSRPPPALGRQKRSDSVSTSDEDS--QSEDRNDLKASPTLG-KRKKRRHR 168
           +G E  A L       +  + K S     S+  S  QS++ +D+ + P L  KRK+RR R
Sbjct: 164 KGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSR 223

Query: 169 TVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQV 210
           T FTA QLEELE+AF   HYPD+Y RE LA + +L E R+QV
Sbjct: 224 TTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQV 265


>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
          Length = 479

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 45/102 (44%), Positives = 60/102 (58%), Gaps = 3/102 (2%)

Query: 112 RGPEPAAPLAPSRPPPALGRQKRSDSVSTSDEDS--QSEDRNDLKASPTLG-KRKKRRHR 168
           +G E  A L       +  + K S     S+  S  QS++ +D+ + P L  KRK+RR R
Sbjct: 164 KGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSR 223

Query: 169 TVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQV 210
           T FTA QLEELE+AF   HYPD+Y RE LA + +L E R+QV
Sbjct: 224 TTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQV 265


>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
          Length = 411

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 36/57 (63%), Positives = 44/57 (77%)

Query: 154 KASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQV 210
           KA     K KKRR+RT FT++QLEELEK F + HYPDVYARE LA++T+L E R+QV
Sbjct: 204 KADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQV 260


>gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
          Length = 343

 Score = 76.3 bits (186), Expect = 2e-14
 Identities = 69/195 (35%), Positives = 79/195 (40%), Gaps = 45/195 (23%)

Query: 23  PRGSRPRGFAITDLLGLEAELPAPAGPG----QGSGCEGPAVAPCPGPGLDGSSLARGAL 78
           PRG R   F       LE  LP PA P     Q  G         PGP L+G     G  
Sbjct: 43  PRGPRLTRFPACG--PLEPYLPEPAKPPAKYLQDLG---------PGPALNGGHFYEG-- 89

Query: 79  PLGLGLLCGFGTQPPAAARAPCLLLADVPFLP---PRGPEPAAPLAPSRPPPALGRQKRS 135
                         PA A       A  P LP     GP          P P L      
Sbjct: 90  --------------PAEAEEKTSKAASFPQLPLDCRGGPRDGPSNLQGSPGPCLASLHLP 135

Query: 136 DSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYARE 195
             +S    DS    +N         K KKRR+RT F+  QLEELEK F + HYPDVYARE
Sbjct: 136 --LSPGLPDSMELAKN---------KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYARE 184

Query: 196 MLAVKTELPEDRIQV 210
            LA++T+L E R+QV
Sbjct: 185 QLALRTDLTEARVQV 199


>gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]
          Length = 325

 Score = 74.7 bits (182), Expect = 7e-14
 Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 3/104 (2%)

Query: 110 PPRGPEPAAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDR---NDLKASPTLGKRKKRR 166
           P   P   A L P      +G    S +VS  D D Q   +   N  +A    G++K++R
Sbjct: 47  PNSDPVEGATLLPGEDITTVGSTPASLAVSAKDPDKQPGPQGGPNPSQAGQQQGQQKQKR 106

Query: 167 HRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQV 210
           HRT FT  QL ELE++F++ HYPD++ RE LA++  L E R+QV
Sbjct: 107 HRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQV 150


>gi|14149760 orthopedia homeobox [Homo sapiens]
          Length = 325

 Score = 74.7 bits (182), Expect = 7e-14
 Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 3/104 (2%)

Query: 110 PPRGPEPAAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDR---NDLKASPTLGKRKKRR 166
           P   P   A L P      +G    S +VS  D D Q   +   N  +A    G++K++R
Sbjct: 47  PNSDPVEGATLLPGEDITTVGSTPASLAVSAKDPDKQPGPQGGPNPSQAGQQQGQQKQKR 106

Query: 167 HRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQV 210
           HRT FT  QL ELE++F++ HYPD++ RE LA++  L E R+QV
Sbjct: 107 HRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQV 150


>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
          Length = 422

 Score = 72.8 bits (177), Expect = 2e-13
 Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 1/89 (1%)

Query: 122 PSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEK 181
           P +P     +Q+     +T+   S  ED ++ +    L KRK +R+RT FT  Q+E LEK
Sbjct: 169 PGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQL-KRKLQRNRTSFTQEQIEALEK 227

Query: 182 AFSEAHYPDVYAREMLAVKTELPEDRIQV 210
            F   HYPDV+ARE LA K +LPE RIQV
Sbjct: 228 EFERTHYPDVFARERLAAKIDLPEARIQV 256


>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
          Length = 436

 Score = 72.8 bits (177), Expect = 2e-13
 Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 1/89 (1%)

Query: 122 PSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEK 181
           P +P     +Q+     +T+   S  ED ++ +    L KRK +R+RT FT  Q+E LEK
Sbjct: 183 PGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQL-KRKLQRNRTSFTQEQIEALEK 241

Query: 182 AFSEAHYPDVYAREMLAVKTELPEDRIQV 210
            F   HYPDV+ARE LA K +LPE RIQV
Sbjct: 242 EFERTHYPDVFARERLAAKIDLPEARIQV 270


>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
          Length = 422

 Score = 72.8 bits (177), Expect = 2e-13
 Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 1/89 (1%)

Query: 122 PSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEK 181
           P +P     +Q+     +T+   S  ED ++ +    L KRK +R+RT FT  Q+E LEK
Sbjct: 169 PGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQL-KRKLQRNRTSFTQEQIEALEK 227

Query: 182 AFSEAHYPDVYAREMLAVKTELPEDRIQV 210
            F   HYPDV+ARE LA K +LPE RIQV
Sbjct: 228 EFERTHYPDVFARERLAAKIDLPEARIQV 256


>gi|24497589 aristaless related homeobox [Homo sapiens]
          Length = 562

 Score = 71.2 bits (173), Expect = 7e-13
 Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 7/75 (9%)

Query: 143 EDSQSEDRNDL-------KASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYARE 195
           ED++ +D  D         +   L KRK+RR+RT FT++QLEELE+AF + HYPDV+ RE
Sbjct: 300 EDAEGKDGEDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTRE 359

Query: 196 MLAVKTELPEDRIQV 210
            LA++ +L E R+QV
Sbjct: 360 ELAMRLDLTEARVQV 374


>gi|14249388 retina and anterior neural fold homeobox 2 [Homo
           sapiens]
          Length = 184

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 31/50 (62%), Positives = 39/50 (78%)

Query: 161 KRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQV 210
           K+K RR+RT FT +QL +LE+AF  +HYPDVY+RE LA K  LPE R+QV
Sbjct: 24  KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQV 73


>gi|12707580 paired-like homeobox 2b [Homo sapiens]
          Length = 314

 Score = 68.2 bits (165), Expect = 6e-12
 Identities = 31/50 (62%), Positives = 40/50 (80%)

Query: 161 KRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQV 210
           KRK+RR RT FT+ QL+ELE+ F+E HYPD+Y RE LA+K +L E R+QV
Sbjct: 95  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQV 144


>gi|46249382 paired-like homeobox 2a [Homo sapiens]
          Length = 284

 Score = 68.2 bits (165), Expect = 6e-12
 Identities = 31/50 (62%), Positives = 40/50 (80%)

Query: 161 KRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQV 210
           KRK+RR RT FT+ QL+ELE+ F+E HYPD+Y RE LA+K +L E R+QV
Sbjct: 87  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQV 136


>gi|4557489 cone-rod homeobox protein [Homo sapiens]
          Length = 299

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 31/49 (63%), Positives = 37/49 (75%)

Query: 162 RKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQV 210
           RK+RR RT FT  QLEELE  F++  YPDVYARE +A+K  LPE R+QV
Sbjct: 37  RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQV 85


>gi|122937321 UNC homeobox [Homo sapiens]
          Length = 531

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 31/48 (64%), Positives = 39/48 (81%)

Query: 163 KKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQV 210
           K+RR RT FT  QLEELEKAF+E+HYPDV+ RE LA++ +L E R+QV
Sbjct: 104 KRRRTRTNFTGWQLEELEKAFNESHYPDVFMREALALRLDLVESRVQV 151


>gi|57232759 intestine-specific homeobox [Homo sapiens]
          Length = 245

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 154 KASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQV--- 210
           K  P  G++ KRR RT FT  QL ELEK F   HYPDV+ R  LA +  LPE R+Q+   
Sbjct: 72  KDQPQEGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQ 131

Query: 211 SGVPFLRSKDTTENVSFPHSVSQSAV 236
           +     R ++   N+  P  +S+++V
Sbjct: 132 NQRAKWRKQEKIGNLGAPQQLSEASV 157


>gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Homo
           sapiens]
          Length = 382

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 32/49 (65%), Positives = 36/49 (73%)

Query: 162 RKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQV 210
           RK+RR RT FTA QLE LEK F + HYPDV  RE LA+ T LPE R+QV
Sbjct: 69  RKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQV 117


>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
           sapiens]
          Length = 406

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 40/98 (40%), Positives = 52/98 (53%), Gaps = 2/98 (2%)

Query: 114 PEPAAPLAPSRPPPALG-RQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFT 172
           P    P      PP L  +Q++ +   T+ E  Q  +       P   +RK+RR RT FT
Sbjct: 89  PPLTKPEQQQEEPPLLELKQEQEEPPQTTVEGPQPAEGPQTAEGPQPPERKRRR-RTAFT 147

Query: 173 AHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQV 210
             QL+ELE  F E+ YPDV ARE LA +  L EDR+QV
Sbjct: 148 QFQLQELENFFDESQYPDVVARERLAARLNLTEDRVQV 185



 Score = 33.5 bits (75), Expect = 0.17
 Identities = 35/116 (30%), Positives = 43/116 (37%), Gaps = 17/116 (14%)

Query: 16  ALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAVAPCP-GPGL----DG 70
           A VP GS     P G  +  +       P P  P       GP +AP P GP +     G
Sbjct: 274 APVPPGSRMAPVPPGPRMAPVPPWPPMAPVPPWPPMAPVPTGPPMAPVPPGPPMARVPPG 333

Query: 71  SSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPLAPSRPP 126
             +AR  +P G          PP A   P   +A +P  PP  P P  P     PP
Sbjct: 334 PPMAR--VPPG----------PPMAPLPPGPPMAPLPPGPPMAPLPPGPPMAPLPP 377



 Score = 29.3 bits (64), Expect = 3.2
 Identities = 29/91 (31%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 44  PAPAGPGQGSGCEGPAVAPCP--GPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCL 101
           P P  P        P +AP P   P   GS +A   +P G   +      PP A   P  
Sbjct: 251 PMPPRPPMVPMPPRPPIAPMPPMAPVPPGSRMA--PVPPG-PRMAPVPPWPPMAPVPPWP 307

Query: 102 LLADVPFLPPRGP-EPAAPLAPSRPPPALGR 131
            +A VP  PP  P  P  P+A   P P + R
Sbjct: 308 PMAPVPTGPPMAPVPPGPPMARVPPGPPMAR 338


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,266,309
Number of Sequences: 37866
Number of extensions: 822319
Number of successful extensions: 7503
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 606
Number of HSP's that attempted gapping in prelim test: 5637
Number of HSP's gapped (non-prelim): 2232
length of query: 239
length of database: 18,247,518
effective HSP length: 99
effective length of query: 140
effective length of database: 14,498,784
effective search space: 2029829760
effective search space used: 2029829760
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.