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Search of human proteins with 40549451
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40549451 lymphatic vessel endothelial hyaluronan receptor 1
[Homo sapiens]
(322 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40549451 lymphatic vessel endothelial hyaluronan receptor 1 [... 642 0.0
gi|48255941 CD44 antigen isoform 4 precursor [Homo sapiens] 77 3e-14
gi|48255939 CD44 antigen isoform 3 precursor [Homo sapiens] 77 3e-14
gi|48255937 CD44 antigen isoform 2 precursor [Homo sapiens] 77 3e-14
gi|48255935 CD44 antigen isoform 1 precursor [Homo sapiens] 77 3e-14
gi|26051243 tumor necrosis factor, alpha-induced protein 6 precu... 60 3e-09
gi|61743978 stabilin 1 precursor [Homo sapiens] 51 1e-06
gi|30102948 hyaluronan and proteoglycan link protein 3 [Homo sap... 50 3e-06
gi|126090892 aggrecan isoform 2 precursor [Homo sapiens] 48 1e-05
gi|126090883 aggrecan isoform 1 precursor [Homo sapiens] 48 1e-05
gi|61743980 stabilin 2 precursor [Homo sapiens] 47 2e-05
gi|187607300 versican isoform 2 [Homo sapiens] 45 1e-04
gi|21361116 versican isoform 1 [Homo sapiens] 45 1e-04
gi|48255943 CD44 antigen isoform 5 precursor [Homo sapiens] 44 1e-04
gi|38372931 brevican isoform 2 [Homo sapiens] 44 1e-04
gi|38372935 brevican isoform 1 [Homo sapiens] 44 1e-04
gi|11141887 brain link protein-1 [Homo sapiens] 43 3e-04
gi|4503053 hyaluronan and proteoglycan link protein 1 [Homo sapi... 43 4e-04
gi|30794472 hyaluronan and proteoglycan link protein 4 [Homo sap... 42 7e-04
gi|118600983 chondroitin sulfate proteoglycan 3 [Homo sapiens] 42 0.001
gi|150378552 sushi domain containing 5 [Homo sapiens] 40 0.003
gi|116284392 mucin 2 precursor [Homo sapiens] 36 0.040
gi|55956914 myosin binding protein H [Homo sapiens] 35 0.069
gi|161019170 mucin 5AC [Homo sapiens] 34 0.15
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 34 0.15
gi|169214154 PREDICTED: hypothetical protein [Homo sapiens] 33 0.26
gi|169213511 PREDICTED: hypothetical protein [Homo sapiens] 33 0.26
gi|150417978 platelet glycoprotein Ib alpha polypeptide precurso... 33 0.34
gi|169167859 PREDICTED: hypothetical protein, partial [Homo sapi... 33 0.44
gi|151301154 mucin 6, gastric [Homo sapiens] 33 0.44
>gi|40549451 lymphatic vessel endothelial hyaluronan receptor 1
[Homo sapiens]
Length = 322
Score = 642 bits (1657), Expect = 0.0
Identities = 322/322 (100%), Positives = 322/322 (100%)
Query: 1 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA 60
MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA
Sbjct: 1 MARCFSLVLLLTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEA 60
Query: 61 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIWKVPV 120
CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIWKVPV
Sbjct: 61 CRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGVGVLIWKVPV 120
Query: 121 SRQFAAYCYNSSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPA 180
SRQFAAYCYNSSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPA
Sbjct: 121 SRQFAAYCYNSSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPA 180
Query: 181 PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENKAAFKNEAAGFGGVPTAL 240
PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENKAAFKNEAAGFGGVPTAL
Sbjct: 181 PTTTPPAPASTSIPRRKKLICVTEVFMETSTMSTETEPFVENKAAFKNEAAGFGGVPTAL 240
Query: 241 LVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIETKVVKEEKANDSNPNEESKKT 300
LVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIETKVVKEEKANDSNPNEESKKT
Sbjct: 241 LVLALLFFGAAAGLGFCYVKRYVKAFPFTNKNQQKEMIETKVVKEEKANDSNPNEESKKT 300
Query: 301 DKNPEESKSPSKTTVRCLEAEV 322
DKNPEESKSPSKTTVRCLEAEV
Sbjct: 301 DKNPEESKSPSKTTVRCLEAEV 322
>gi|48255941 CD44 antigen isoform 4 precursor [Homo sapiens]
Length = 361
Score = 76.6 bits (187), Expect = 3e-14
Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
Query: 25 LRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEACRLLGLSLAGKDQVETALKASFET 84
L ++ + ++CR G+ V K ++ TEA + C+ +L Q+E AL FET
Sbjct: 17 LSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFET 76
Query: 85 CSYGWVGDGFVVISRISPNPKCGKNGVGVLIWKVPVSRQFAAYCYNSSDTWTNSC 139
C YG++ +G VVI RI PN C N GV I S Q+ YC+N+S C
Sbjct: 77 CRYGFI-EGHVVIPRIHPNSICAANNTGVYILTSNTS-QYDTYCFNASAPPEEDC 129
>gi|48255939 CD44 antigen isoform 3 precursor [Homo sapiens]
Length = 493
Score = 76.6 bits (187), Expect = 3e-14
Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
Query: 25 LRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEACRLLGLSLAGKDQVETALKASFET 84
L ++ + ++CR G+ V K ++ TEA + C+ +L Q+E AL FET
Sbjct: 17 LSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFET 76
Query: 85 CSYGWVGDGFVVISRISPNPKCGKNGVGVLIWKVPVSRQFAAYCYNSSDTWTNSC 139
C YG++ +G VVI RI PN C N GV I S Q+ YC+N+S C
Sbjct: 77 CRYGFI-EGHVVIPRIHPNSICAANNTGVYILTSNTS-QYDTYCFNASAPPEEDC 129
>gi|48255937 CD44 antigen isoform 2 precursor [Homo sapiens]
Length = 699
Score = 76.6 bits (187), Expect = 3e-14
Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
Query: 25 LRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEACRLLGLSLAGKDQVETALKASFET 84
L ++ + ++CR G+ V K ++ TEA + C+ +L Q+E AL FET
Sbjct: 17 LSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFET 76
Query: 85 CSYGWVGDGFVVISRISPNPKCGKNGVGVLIWKVPVSRQFAAYCYNSSDTWTNSC 139
C YG++ +G VVI RI PN C N GV I S Q+ YC+N+S C
Sbjct: 77 CRYGFI-EGHVVIPRIHPNSICAANNTGVYILTSNTS-QYDTYCFNASAPPEEDC 129
>gi|48255935 CD44 antigen isoform 1 precursor [Homo sapiens]
Length = 742
Score = 76.6 bits (187), Expect = 3e-14
Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
Query: 25 LRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEACRLLGLSLAGKDQVETALKASFET 84
L ++ + ++CR G+ V K ++ TEA + C+ +L Q+E AL FET
Sbjct: 17 LSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFET 76
Query: 85 CSYGWVGDGFVVISRISPNPKCGKNGVGVLIWKVPVSRQFAAYCYNSSDTWTNSC 139
C YG++ +G VVI RI PN C N GV I S Q+ YC+N+S C
Sbjct: 77 CRYGFI-EGHVVIPRIHPNSICAANNTGVYILTSNTS-QYDTYCFNASAPPEEDC 129
>gi|26051243 tumor necrosis factor, alpha-induced protein 6
precursor [Homo sapiens]
Length = 277
Score = 59.7 bits (143), Expect = 3e-09
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 45 SKKANQQLNFTEAKEACRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNP 104
++ +L + EAK C G LA Q+E A K F C+ GW+ G V + P P
Sbjct: 42 ARSGKYKLTYAEAKAVCEFEGGHLATYKQLEAARKIGFHVCAAGWMAKGRVGYPIVKPGP 101
Query: 105 KCGKNGVGVLIWKVPVSR--QFAAYCYN 130
CG G++ + + ++R ++ AYCYN
Sbjct: 102 NCGFGKTGIIDYGIRLNRSERWDAYCYN 129
>gi|61743978 stabilin 1 precursor [Homo sapiens]
Length = 2570
Score = 51.2 bits (121), Expect = 1e-06
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 52 LNFTEAKEACRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNGV 111
LNF+EA+ AC G LA Q+ A + F C GW+ +G + P CG V
Sbjct: 2221 LNFSEAEAACEAQGAVLASFPQLSAAQQLGFHLCLMGWLANGSTAHPVVFPVADCGNGRV 2280
Query: 112 GV--LIWKVPVSRQFAAYCYNSSD 133
G+ L + +S ++ AYC+ D
Sbjct: 2281 GIVSLGARKNLSERWDAYCFRVQD 2304
>gi|30102948 hyaluronan and proteoglycan link protein 3 [Homo
sapiens]
Length = 360
Score = 50.1 bits (118), Expect = 3e-06
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 50 QQLNFTEAKEACRLLGLSLAGKDQVETALKA-SFETCSYGWVGDGFVVISRISPNPKCG- 107
++L TEA+EAC+ ++A Q+ A K + C GW+ DG V + P+P CG
Sbjct: 275 EKLTLTEAREACQEDDATIAKVGQLFAAWKFHGLDRCDAGWLADGSVRYPVVHPHPNCGP 334
Query: 108 -KNGVGVLIWKVPVSRQFAAYCY 129
+ GV + P SR + YCY
Sbjct: 335 PEPGVRSFGFPDPQSRLYGVYCY 357
Score = 36.2 bits (82), Expect = 0.040
Identities = 23/94 (24%), Positives = 38/94 (40%)
Query: 18 RLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEACRLLGLSLAGKDQVETA 77
R V L E +++ R + S Q NF E ++ C +A +Q+ A
Sbjct: 145 RCEVIDGLEDESGLVELELRGVVFPYQSPNGRYQFNFHEGQQVCAEQAAVVASFEQLFRA 204
Query: 78 LKASFETCSYGWVGDGFVVISRISPNPKCGKNGV 111
+ + C+ GW+ D V + P CG G+
Sbjct: 205 WEEGLDWCNAGWLQDATVQYPIMLPRQPCGGPGL 238
>gi|126090892 aggrecan isoform 2 precursor [Homo sapiens]
Length = 2416
Score = 47.8 bits (112), Expect = 1e-05
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 50 QQLNFTEAKEACRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKN 109
++ F EA CR LG LA Q+ A +A + CS GW+ D V P CG N
Sbjct: 262 EKFTFQEAANECRRLGARLATTGQLYLAWQAGMDMCSAGWLADRSVRYPISKARPNCGGN 321
Query: 110 GVGVLIWKVPV--------SRQFAAYCYNSSD 133
+GV V S ++ A CY D
Sbjct: 322 LLGVRTVYVHANQTGYPDPSSRYDAICYTGED 353
Score = 47.0 bits (110), Expect = 2e-05
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 52 LNFTEAKEACRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKC---GK 108
L F EA++AC G +A +Q++ A +A +E C GW+ D V +SP C
Sbjct: 491 LTFEEAQQACLRTGAVIASPEQLQAAYEAGYEQCDAGWLRDQTVRYPIVSPRTPCVGDKD 550
Query: 109 NGVGVLIWKV-PVSRQFAAYCY 129
+ GV + V P + + YC+
Sbjct: 551 SSPGVRTYGVRPSTETYDVYCF 572
Score = 42.7 bits (99), Expect = 4e-04
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 50 QQLNFTEAKEACRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKN 109
+Q F EA E C +LA Q+ A + C GW+ DG + ++P P CG +
Sbjct: 587 EQFTFQEALEFCESHNATLATTGQLYAAWSRGLDKCYAGWLADGSLRYPIVTPRPACGGD 646
Query: 110 GVGV 113
GV
Sbjct: 647 KPGV 650
Score = 32.3 bits (72), Expect = 0.58
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 52 LNFTEAKEACRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKC 106
L+F A+ AC +A +Q++ A + F C GW+ D V +P C
Sbjct: 166 LDFDRAQRACLQNSAIIATPEQLQAAYEDGFHQCDAGWLADQTVRYPIHTPREGC 220
>gi|126090883 aggrecan isoform 1 precursor [Homo sapiens]
Length = 2317
Score = 47.8 bits (112), Expect = 1e-05
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 50 QQLNFTEAKEACRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKN 109
++ F EA CR LG LA Q+ A +A + CS GW+ D V P CG N
Sbjct: 262 EKFTFQEAANECRRLGARLATTGQLYLAWQAGMDMCSAGWLADRSVRYPISKARPNCGGN 321
Query: 110 GVGVLIWKVPV--------SRQFAAYCYNSSD 133
+GV V S ++ A CY D
Sbjct: 322 LLGVRTVYVHANQTGYPDPSSRYDAICYTGED 353
Score = 47.0 bits (110), Expect = 2e-05
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 52 LNFTEAKEACRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKC---GK 108
L F EA++AC G +A +Q++ A +A +E C GW+ D V +SP C
Sbjct: 491 LTFEEAQQACLRTGAVIASPEQLQAAYEAGYEQCDAGWLRDQTVRYPIVSPRTPCVGDKD 550
Query: 109 NGVGVLIWKV-PVSRQFAAYCY 129
+ GV + V P + + YC+
Sbjct: 551 SSPGVRTYGVRPSTETYDVYCF 572
Score = 42.7 bits (99), Expect = 4e-04
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 50 QQLNFTEAKEACRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKN 109
+Q F EA E C +LA Q+ A + C GW+ DG + ++P P CG +
Sbjct: 587 EQFTFQEALEFCESHNATLATTGQLYAAWSRGLDKCYAGWLADGSLRYPIVTPRPACGGD 646
Query: 110 GVGV 113
GV
Sbjct: 647 KPGV 650
Score = 32.3 bits (72), Expect = 0.58
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 52 LNFTEAKEACRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKC 106
L+F A+ AC +A +Q++ A + F C GW+ D V +P C
Sbjct: 166 LDFDRAQRACLQNSAIIATPEQLQAAYEDGFHQCDAGWLADQTVRYPIHTPREGC 220
>gi|61743980 stabilin 2 precursor [Homo sapiens]
Length = 2551
Score = 47.0 bits (110), Expect = 2e-05
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 43 LVSKKANQQLNFTEAKEACRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISP 102
L S +L F +A+EAC ++A +Q+ A KA + CS GW+ G V
Sbjct: 2202 LRSPLGQYKLTFDKAREACANEAATMATYNQLSYAQKAKYHLCSAGWLETGRVAYPTAFA 2261
Query: 103 NPKCGKNGVGVLIW--KVPVSRQFAAYCYNSSD 133
+ CG VG++ + + S + +CY D
Sbjct: 2262 SQNCGSGVVGIVDYGPRPNKSEMWDVFCYRMKD 2294
>gi|187607300 versican isoform 2 [Homo sapiens]
Length = 655
Score = 44.7 bits (104), Expect = 1e-04
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 28 EELSIQVSCRIMGITLVSKKANQQ--LNFTEAKEACRLLGLSLAGKDQVETALKASFETC 85
E+ VS + G+ + A + LNF A++AC +G +A +Q+ A + FE C
Sbjct: 137 EDTQDTVSLTVDGVVFHYRAATSRYTLNFEAAQKACLDVGAVIATPEQLFAAYEDGFEQC 196
Query: 86 SYGWVGDGFVVISRISPNPKC-----GKNGVGVLIWKVPVSRQFAAYCY 129
GW+ D V +P C GK GV ++ P + YCY
Sbjct: 197 DAGWLADQTVRYPIRAPRVGCYGDKMGKAGVRTYGFRSP-QETYDVYCY 244
Score = 39.3 bits (90), Expect = 0.005
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 51 QLNFTEAKEACRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNG 110
+ F EA + C LA +++ A + F+ C YGW+ D V +CG
Sbjct: 260 KFTFEEAAKECENQDARLATVGELQAAWRNGFDQCDYGWLSDASVRHPVTVARAQCGGGL 319
Query: 111 VGV-LIWKV-------PVSRQFAAYCYNSSD 133
+GV +++ P +F AYC+ D
Sbjct: 320 LGVRTLYRFENQTGFPPPDSRFDAYCFKRPD 350
>gi|21361116 versican isoform 1 [Homo sapiens]
Length = 3396
Score = 44.7 bits (104), Expect = 1e-04
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 28 EELSIQVSCRIMGITLVSKKANQQ--LNFTEAKEACRLLGLSLAGKDQVETALKASFETC 85
E+ VS + G+ + A + LNF A++AC +G +A +Q+ A + FE C
Sbjct: 137 EDTQDTVSLTVDGVVFHYRAATSRYTLNFEAAQKACLDVGAVIATPEQLFAAYEDGFEQC 196
Query: 86 SYGWVGDGFVVISRISPNPKC-----GKNGVGVLIWKVPVSRQFAAYCY 129
GW+ D V +P C GK GV ++ P + YCY
Sbjct: 197 DAGWLADQTVRYPIRAPRVGCYGDKMGKAGVRTYGFRSP-QETYDVYCY 244
Score = 43.1 bits (100), Expect = 3e-04
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 22/148 (14%)
Query: 51 QLNFTEAKEACRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNG 110
+ F EA + C LA +++ A + F+ C YGW+ D V +CG
Sbjct: 260 KFTFEEAAKECENQDARLATVGELQAAWRNGFDQCDYGWLSDASVRHPVTVARAQCGGGL 319
Query: 111 VGV-LIWKV-------PVSRQFAAYCYNSSDTWTNSCIPEIITTKDPIFNTQTATQTTE- 161
+GV +++ P +F AYC+ P+ TT D +TA+ +
Sbjct: 320 LGVRTLYRFENQTGFPPPDSRFDAYCFK----------PKEATTIDLSILAETASPSLSK 369
Query: 162 --FIVSDSTYSVASPYSTIPA-PTTTPP 186
+VSD T + +P PT PP
Sbjct: 370 EPQMVSDRTTPIIPLVDELPVIPTEFPP 397
>gi|48255943 CD44 antigen isoform 5 precursor [Homo sapiens]
Length = 139
Score = 44.3 bits (103), Expect = 1e-04
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 25 LRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEACRLLGLSLAGKDQVETALKASFET 84
L ++ + ++CR G+ V K ++ TEA + C+ +L Q+E AL FET
Sbjct: 17 LSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFET 76
Query: 85 CS 86
CS
Sbjct: 77 CS 78
>gi|38372931 brevican isoform 2 [Homo sapiens]
Length = 671
Score = 44.3 bits (103), Expect = 1e-04
Identities = 47/203 (23%), Positives = 80/203 (39%), Gaps = 29/203 (14%)
Query: 50 QQLNFTEAKEACRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKN 109
++L EA+ C+ G +A Q+ A + CS GW+ DG V ++P+ +CG
Sbjct: 266 EKLTLEEARAYCQERGAEIATTGQLYAAWDGGLDHCSPGWLADGSVRYPIVTPSQRCGGG 325
Query: 110 GVGV-LIWKVP-------VSRQFAAYCYNSSDTWTNSCIPE---------------IITT 146
GV ++ P +F YC+ D+ S IPE I+T
Sbjct: 326 LPGVKTLFLFPNQTGFPNKHSRFNVYCFR--DSAQPSAIPEASNPASNPASDGLEAIVTV 383
Query: 147 KDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPASTSIPRRKKLICVTEVF 206
+ + Q + TE + YS+ ++TP PA R L T+
Sbjct: 384 TETLEELQLPQEATESESRGAIYSIPI-MEDGGGGSSTPEDPAEAP---RTLLEFETQSM 439
Query: 207 METSTMSTETEPFVENKAAFKNE 229
+ + S E +E + +++E
Sbjct: 440 VPPTGFSEEEGKALEEEEKYEDE 462
Score = 40.4 bits (93), Expect = 0.002
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 28 EELSIQVSCRIMGITLVSKK--ANQQLNFTEAKEACRLLGLSLAGKDQVETALKASFETC 85
++ S V ++ G+ + ++ A +F+ A+EAC +G +A +Q+ A +E C
Sbjct: 144 DDSSDAVEVKVKGVVFLYREGSARYAFSFSGAQEACARIGAHIATPEQLYAAYLGGYEQC 203
Query: 86 SYGWVGDGFVVISRISPNPKC 106
GW+ D V +P C
Sbjct: 204 DAGWLSDQTVRYPIQTPREAC 224
>gi|38372935 brevican isoform 1 [Homo sapiens]
Length = 911
Score = 44.3 bits (103), Expect = 1e-04
Identities = 47/203 (23%), Positives = 80/203 (39%), Gaps = 29/203 (14%)
Query: 50 QQLNFTEAKEACRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKN 109
++L EA+ C+ G +A Q+ A + CS GW+ DG V ++P+ +CG
Sbjct: 266 EKLTLEEARAYCQERGAEIATTGQLYAAWDGGLDHCSPGWLADGSVRYPIVTPSQRCGGG 325
Query: 110 GVGV-LIWKVP-------VSRQFAAYCYNSSDTWTNSCIPE---------------IITT 146
GV ++ P +F YC+ D+ S IPE I+T
Sbjct: 326 LPGVKTLFLFPNQTGFPNKHSRFNVYCFR--DSAQPSAIPEASNPASNPASDGLEAIVTV 383
Query: 147 KDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPASTSIPRRKKLICVTEVF 206
+ + Q + TE + YS+ ++TP PA R L T+
Sbjct: 384 TETLEELQLPQEATESESRGAIYSIPI-MEDGGGGSSTPEDPAEAP---RTLLEFETQSM 439
Query: 207 METSTMSTETEPFVENKAAFKNE 229
+ + S E +E + +++E
Sbjct: 440 VPPTGFSEEEGKALEEEEKYEDE 462
Score = 40.4 bits (93), Expect = 0.002
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 28 EELSIQVSCRIMGITLVSKK--ANQQLNFTEAKEACRLLGLSLAGKDQVETALKASFETC 85
++ S V ++ G+ + ++ A +F+ A+EAC +G +A +Q+ A +E C
Sbjct: 144 DDSSDAVEVKVKGVVFLYREGSARYAFSFSGAQEACARIGAHIATPEQLYAAYLGGYEQC 203
Query: 86 SYGWVGDGFVVISRISPNPKC 106
GW+ D V +P C
Sbjct: 204 DAGWLSDQTVRYPIQTPREAC 224
>gi|11141887 brain link protein-1 [Homo sapiens]
Length = 340
Score = 43.1 bits (100), Expect = 3e-04
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 51 QLNFTEAKEACRLLGLSLAGKDQVETALKAS-FETCSYGWVGDGFVVISRISPNPKCG-- 107
+L +EA ACR G +A + A K S + C GW+ DG V +P P+CG
Sbjct: 255 RLTLSEAHAACRRRGAVVAKVGHLYAAWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGL 314
Query: 108 -KNGVGVLIWKVPVSRQFAAYCY 129
GV + P + YCY
Sbjct: 315 PDPGVRSFGFPRPQQAAYGTYCY 337
Score = 38.5 bits (88), Expect = 0.008
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 28 EELSIQVSCRIMGITLVSK--KANQQLNFTEAKEACRLLGLSLAGKDQVETALKASFETC 85
E+ S+ ++ + G+ + + Q N+ EAK+AC LA Q+ A + C
Sbjct: 135 EDESVALTLSLEGVVFPYQPSRGRYQFNYYEAKQACEEQDGRLATYSQLYQAWTEGLDWC 194
Query: 86 SYGWVGDGFVVISRISPNPKCGKNGVGVLIWKVPVSR---QFAAYCYNSS 132
+ GW+ +G V ++ CG G + P R ++ A+C+ S+
Sbjct: 195 NAGWLLEGSVRYPVLTARAPCGGRGRPGIRSYGPRDRMRDRYDAFCFTSA 244
>gi|4503053 hyaluronan and proteoglycan link protein 1 [Homo
sapiens]
Length = 354
Score = 42.7 bits (99), Expect = 4e-04
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 28 EELSIQVSCRIMGITL--VSKKANQQLNFTEAKEACRLLGLSLAGKDQVETALKASFETC 85
E+ ++ V+ + G+ + LNF EA++AC +A DQ+ A + + C
Sbjct: 146 EDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQACLDQDAVIASFDQLYDAWRGGLDWC 205
Query: 86 SYGWVGDGFVVISRISPNPKCGKNGV--GVL---IWKVPVSRQFAAYCYNSS 132
+ GW+ DG V P CG GV W SR + +C+ S+
Sbjct: 206 NAGWLSDGSVQYPITKPREPCGGQNTVPGVRNYGFWDKDKSR-YDVFCFTSN 256
Score = 36.2 bits (82), Expect = 0.040
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 51 QLNFTEAKEACRLLGLSLAGKDQVETALKA-SFETCSYGWVGDGFVVISRISPNPKCGKN 109
+L + EA +AC G +A Q+ A K ++ C GW+ DG V P +C
Sbjct: 269 KLTYDEAVQACLNDGAQIAKVGQIFAAWKILGYDRCDAGWLADGSVRYPISRPRRRCSPT 328
Query: 110 GVGVLIWKVPVSRQ--FAAYCYNS 131
V P + + YC+ +
Sbjct: 329 EAAVRFVGFPDKKHKLYGVYCFRA 352
>gi|30794472 hyaluronan and proteoglycan link protein 4 [Homo
sapiens]
Length = 402
Score = 42.0 bits (97), Expect = 7e-04
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 54 FTEAKEACRLLGLSLAGKDQVETALKASF-ETCSYGWVGDGFVVISRISPNPKCG--KNG 110
F+ A AC G ++A Q+ A K + C+ GW+ DG ++P +CG + G
Sbjct: 286 FSGAARACAARGAAVAKVGQLFAAWKLQLLDRCTAGWLADGSARYPIVNPRARCGGRRPG 345
Query: 111 VGVLIWKVPVSRQFAAYCYNS 131
V L + R F YCY +
Sbjct: 346 VRSLGFPDATRRLFGVYCYRA 366
Score = 37.7 bits (86), Expect = 0.014
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 51 QLNFTEAKEACRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNG 110
+L F EA+ AC LA +Q+ A + + C+ GW+ DG V P CG G
Sbjct: 175 KLTFAEAQRACAEQDGILASAEQLHAAWRDGLDWCNAGWLRDGSVQYPVNRPREPCGGLG 234
>gi|118600983 chondroitin sulfate proteoglycan 3 [Homo sapiens]
Length = 1321
Score = 41.6 bits (96), Expect = 0.001
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 34 VSCRIMGITLVSKKANQQ--LNFTEAKEACRLLGLSLAGKDQVETALKASFETCSYGWVG 91
V + G+ + A + L F EA+EACRL +A ++ A + F+ C GW+
Sbjct: 153 VPLEVTGVVFHYRSARDRYALTFAEAQEACRLSSAIIAAPRHLQAAFEDGFDNCDAGWLS 212
Query: 92 DGFVVISRISPNPKC 106
D V P C
Sbjct: 213 DRTVRYPITQSRPGC 227
Score = 40.0 bits (92), Expect = 0.003
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 50 QQLNFTEAKEACRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKN 109
++L A+ CR G +LA Q+ A + C GW+ DG V +P +CG
Sbjct: 269 RRLTLAGARAQCRRQGAALASVGQLHLAWHEGLDQCDPGWLADGSVRYPIQTPRRRCGGP 328
Query: 110 GVGVLI---------WKVPVSRQFAAYCYNS 131
GV + P R F AYC+ +
Sbjct: 329 APGVRTVYRFANRTGFPSPAER-FDAYCFRA 358
>gi|150378552 sushi domain containing 5 [Homo sapiens]
Length = 629
Score = 40.0 bits (92), Expect = 0.003
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 11 LTSIWTTRLLVQGSLRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEACRLLGLSLAG 70
L +W LL+ G R LS++ + L S+ +Q L A+ +C+ G LA
Sbjct: 16 LPGLWAAALLLLGLPR---LSVRADGKFF--VLESQNGSQGLQLEAARLSCKSRGAHLAS 70
Query: 71 KDQVETALK-ASFETCSYGWVGDG 93
D++ ++ SF C+ GW+ DG
Sbjct: 71 ADELRRVVQDCSFAVCTTGWLADG 94
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 36.2 bits (82), Expect = 0.040
Identities = 23/64 (35%), Positives = 27/64 (42%)
Query: 131 SSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPAS 190
S T T + P T PI T T TT ST + P +T PTTTP P +
Sbjct: 1423 SPPTTTTTTPPPTTTPSPPITTTTTPPPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTT 1482
Query: 191 TSIP 194
T P
Sbjct: 1483 TPSP 1486
Score = 33.1 bits (74), Expect = 0.34
Identities = 23/62 (37%), Positives = 26/62 (41%)
Query: 131 SSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPAS 190
S T T S P TT P T TT +T S +T P PTTTP P S
Sbjct: 1400 SPPTTTPSPPPTSTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPPPTTTPSPPIS 1459
Query: 191 TS 192
T+
Sbjct: 1460 TT 1461
Score = 33.1 bits (74), Expect = 0.34
Identities = 21/58 (36%), Positives = 27/58 (46%)
Query: 136 TNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPASTSI 193
T + P I TT P T + TT +T S + +T P PTTTP P +T I
Sbjct: 1451 TTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPTTTPI 1508
Score = 32.7 bits (73), Expect = 0.44
Identities = 20/63 (31%), Positives = 27/63 (42%)
Query: 131 SSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPAS 190
S T T + P T P T +T + +T S + +T P PTTTP P +
Sbjct: 1485 SPPTTTTTTPPPTTTPSPPTTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTT 1544
Query: 191 TSI 193
T I
Sbjct: 1545 TPI 1547
Score = 32.7 bits (73), Expect = 0.44
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 131 SSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPAS 190
S T T P TT P T ++ TT +T + SP +T +P TT P+S
Sbjct: 1658 SPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSS 1717
Query: 191 TSIP 194
T+ P
Sbjct: 1718 TTTP 1721
Score = 32.3 bits (72), Expect = 0.58
Identities = 21/78 (26%), Positives = 33/78 (42%)
Query: 141 PEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPASTSIPRRKKLI 200
P TT P T + TT +T + P +T +P TT P+P +T++
Sbjct: 1644 PPTTTTTPPPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTT 1703
Query: 201 CVTEVFMETSTMSTETEP 218
+ T+T S+ T P
Sbjct: 1704 TPSSPITTTTTPSSTTTP 1721
Score = 31.6 bits (70), Expect = 0.99
Identities = 21/81 (25%), Positives = 31/81 (38%)
Query: 136 TNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPASTSIPR 195
T + P TT P T T+ + +T P +T P TT P+P +T+ P
Sbjct: 1528 TTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPS 1587
Query: 196 RKKLICVTEVFMETSTMSTET 216
+ T T + T T
Sbjct: 1588 PPTITTTTPPPTTTPSPPTTT 1608
Score = 31.2 bits (69), Expect = 1.3
Identities = 19/62 (30%), Positives = 26/62 (41%)
Query: 131 SSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPAS 190
S T T + P T P T +T + +T S +T P PTTTP P +
Sbjct: 1524 SPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTT 1583
Query: 191 TS 192
T+
Sbjct: 1584 TT 1585
Score = 31.2 bits (69), Expect = 1.3
Identities = 19/62 (30%), Positives = 26/62 (41%)
Query: 131 SSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPAS 190
S T T + P T P T +T + +T S +T P PTTTP P +
Sbjct: 1603 SPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTT 1662
Query: 191 TS 192
T+
Sbjct: 1663 TT 1664
Score = 31.2 bits (69), Expect = 1.3
Identities = 21/62 (33%), Positives = 27/62 (43%)
Query: 130 NSSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPA 189
+S T T S +TT P + TT S +T S T P+PTTTP P
Sbjct: 1682 SSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPPTTMTTPSPTTTPSPPT 1741
Query: 190 ST 191
+T
Sbjct: 1742 TT 1743
Score = 30.8 bits (68), Expect = 1.7
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 137 NSCIP--EIITTKDPIFNTQTATQT-TEFIVSDSTYSVASPYSTIPAPTTTPPAPASTS 192
N C P + ITT P T + T T + +T S + +T P PTTTP P +T+
Sbjct: 1387 NCCWPMDKCITTPSPPTTTPSPPPTSTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTT 1445
Score = 30.8 bits (68), Expect = 1.7
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 136 TNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPASTSIP 194
T + P TT P T T+ + +T P +T P TT P+P +T+ P
Sbjct: 1607 TTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTP 1665
Score = 30.8 bits (68), Expect = 1.7
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 136 TNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASP---YSTIPAPTTTPPAPASTS 192
+ + +P T P T T TT S T + SP +T P PTTTP +P +T+
Sbjct: 1631 STTTLPPTTTPSPPPTTTTTPPPTTT--PSPPTTTTPSPPITTTTTPPPTTTPSSPITTT 1688
Query: 193 -IPRRKKLICVTEVFMETSTMSTETEP 218
P + + +S ++T T P
Sbjct: 1689 PSPPTTTMTTPSPTTTPSSPITTTTTP 1715
Score = 30.0 bits (66), Expect = 2.9
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 136 TNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAP---TTTPPAPASTS 192
T + P T PI T T TT + SP +T P+P TTT P P +T
Sbjct: 1444 TTTTPPPTTTPSPPISTTTTPPPTT---TPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTP 1500
Query: 193 IP 194
P
Sbjct: 1501 SP 1502
Score = 29.6 bits (65), Expect = 3.8
Identities = 18/59 (30%), Positives = 23/59 (38%)
Query: 136 TNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPASTSIP 194
T + P TT P T T T +T P +T +P TT P P S + P
Sbjct: 1710 TTTTTPSSTTTPSPPPTTMTTPSPTTTPSPPTTTMTTLPPTTTSSPLTTTPLPPSITPP 1768
Score = 29.3 bits (64), Expect = 4.9
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 145 TTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPASTS 192
TT P T T T +T + P ST P TT P+P +T+
Sbjct: 1482 TTPSPPTTTTTTPPPTTTPSPPTTTPITPPASTTTLPPTTTPSPPTTT 1529
Score = 29.3 bits (64), Expect = 4.9
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 136 TNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASP---YSTIPAPTTTPPAPASTS 192
+ + +P T P T T TT S T + SP +T P PTTTP P +T+
Sbjct: 1552 STTTLPPTTTPSPPPTTTTTPPPTTT--PSPPTTTTPSPPTITTTTPPPTTTPSPPTTTT 1609
Score = 29.3 bits (64), Expect = 4.9
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 141 PEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAP--ASTSIP 194
P T P T T TT +T + P +T PTTTP P ++T++P
Sbjct: 1581 PTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLP 1636
Score = 29.3 bits (64), Expect = 4.9
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 141 PEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPASTS 192
P TT P T T T +T + P ST P TT P+P T+
Sbjct: 1596 PPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTT 1647
Score = 29.3 bits (64), Expect = 4.9
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 145 TTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTT----PPAPASTSIPRRKKLI 200
TT++P T T TT + T + +T P TTT P P T P +
Sbjct: 1889 TTENPTPPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPIT 1948
Query: 201 CVTEVFMETSTMSTET 216
T V + T+T
Sbjct: 1949 TTTTVTPTPTPTGTQT 1964
Score = 28.9 bits (63), Expect = 6.4
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 10/76 (13%)
Query: 153 TQTATQTTEFIVSDSTYSVASPYSTIPAPTTTP----------PAPASTSIPRRKKLICV 202
T T T TT I + +T + + PTTTP P P T P +
Sbjct: 4122 TGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTT 4181
Query: 203 TEVFMETSTMSTETEP 218
T V + T+T P
Sbjct: 4182 TTVTPTPTPTGTQTGP 4197
Score = 28.5 bits (62), Expect = 8.4
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 141 PEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAP---TTTPPAPASTSIP 194
P TT P T + TT ST ++ P +T P+P TTT P P +T P
Sbjct: 1487 PTTTTTTPPPTTTPSPPTTTPITPPASTTTL--PPTTTPSPPTTTTTTPPPTTTPSP 1541
Score = 28.5 bits (62), Expect = 8.4
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 145 TTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPASTS 192
TT P T T T +T + P ST P TT P+P T+
Sbjct: 1521 TTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTT 1568
Score = 28.5 bits (62), Expect = 8.4
Identities = 18/57 (31%), Positives = 23/57 (40%)
Query: 136 TNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPASTS 192
T + P TT P T T T +T + P +T P+P TT P TS
Sbjct: 1575 TTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTS 1631
>gi|55956914 myosin binding protein H [Homo sapiens]
Length = 477
Score = 35.4 bits (80), Expect = 0.069
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 138 SCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAP------TTTPPAPAST 191
+C PE T TA E VS+ST P PAP T T PAP S
Sbjct: 11 ACSPE--ETASESAKVPTAEPPGEVAVSESTREEQVPKPQAPAPQAPTASTATKPAPPSE 68
Query: 192 SIPRRKKLICVTEVFMETSTMSTE 215
+P L+ + +V + T+S E
Sbjct: 69 DVPSAPLLLTLDDVSSSSVTVSWE 92
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 34.3 bits (77), Expect = 0.15
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 131 SSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPA--- 187
+S T+S P TT + T TAT++T V+ S T+P TTTP A
Sbjct: 4765 TSSKATSSSSPRTATTLPVL--TSTATKSTATSVTPIPSSTLGTTGTLPEQTTTPVATMS 4822
Query: 188 ---PASTSIPRRKKLICVTEVFMETSTMSTET 216
P+ST + T+ +T ST T
Sbjct: 4823 TIHPSSTPETTHTSTVLTTKATTTRATSSTST 4854
Score = 29.6 bits (65), Expect = 3.8
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 131 SSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPAS 190
+S T+S P TT + +T T + T F S T+P TTTP A S
Sbjct: 3618 TSSKATSSSSPRTATTLPVLTSTATKSTATSFTPIPSF--TLGTTGTLPEQTTTPMATMS 3675
Query: 191 TSIPRRKKLICVTEVFMETSTMST 214
T P T + T +T
Sbjct: 3676 TIHPSSTPETTHTSTVLTTKATTT 3699
Score = 29.3 bits (64), Expect = 4.9
Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 131 SSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPAS 190
SS T + E+ TT T T ST A P + +P TTP A +S
Sbjct: 4714 SSTPGTTWILTELTTT------ATTTASTGSTATPSSTPGTAPPPKVLTSPATTPTATSS 4767
Query: 191 TSIPRRKKLICVT-EVFMETSTMSTET 216
+ T V T+T ST T
Sbjct: 4768 KATSSSSPRTATTLPVLTSTATKSTAT 4794
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 34.3 bits (77), Expect = 0.15
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 131 SSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPA--- 187
+S T+S P TT + T TAT++T V+ S T+P TTTP A
Sbjct: 4295 TSSKATSSSSPRTATTLPVL--TSTATKSTATSVTPIPSSTLGTTGTLPEQTTTPVATMS 4352
Query: 188 ---PASTSIPRRKKLICVTEVFMETSTMSTET 216
P+ST + T+ +T ST T
Sbjct: 4353 TIHPSSTPETTHTSTVLTTKATTTRATSSTST 4384
Score = 30.8 bits (68), Expect = 1.7
Identities = 32/104 (30%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 119 PVSRQFAAYCYNSSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTI 178
PV A +S T+S P TT + +T T + T F S S T+
Sbjct: 4710 PVLTSTATTPAATSSKATSSSSPRTATTLPVLTSTATKSTATSFTPIPS--STLWTTWTV 4767
Query: 179 PAPTTTPPAPAST----SIPR--RKKLICVTEVFMETSTMSTET 216
PA TTTP + ST S P + T M +T ST T
Sbjct: 4768 PAQTTTPMSTMSTIHTSSTPETTHTSTVLTTTATMTRATNSTAT 4811
Score = 29.6 bits (65), Expect = 3.8
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 131 SSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPAS 190
+S T+S P TT + +T T + T F S T+P TTTP A S
Sbjct: 3038 TSSKATSSSSPRTATTLPVLTSTATKSTATSFTPIPSF--TLGTTGTLPEQTTTPMATMS 3095
Query: 191 TSIPRRKKLICVTEVFMETSTMST 214
T P T + T +T
Sbjct: 3096 TIHPSSTPETTHTSTVLTTKATTT 3119
Score = 29.3 bits (64), Expect = 4.9
Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 131 SSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPAS 190
SS T + E+ TT T T ST A P + +P TTP A +S
Sbjct: 4244 SSTPGTTWILTELTTT------ATTTASTGSTATPSSTPGTAPPPKVLTSPATTPTATSS 4297
Query: 191 TSIPRRKKLICVT-EVFMETSTMSTET 216
+ T V T+T ST T
Sbjct: 4298 KATSSSSPRTATTLPVLTSTATKSTAT 4324
Score = 28.9 bits (63), Expect = 6.4
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 15/83 (18%)
Query: 131 SSDTWTNSCIPEIITTKDPIFNTQTATQ--------------TTEFIVSDSTYSVASPYS 176
SS T T+ P +ITT I T + T TT +T S +P S
Sbjct: 3938 SSSTQTSGTPPSLITTATTITATGSTTNPSSTPGTTPIPPVLTTTATTPAATSSTVTPSS 3997
Query: 177 TIPAPTTTPPAPASTSIPRRKKL 199
+ T TPP P +T+ + L
Sbjct: 3998 AL-GTTHTPPVPNTTATTHGRSL 4019
Score = 28.5 bits (62), Expect = 8.4
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 131 SSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPAS 190
SS T T+ P + TT I T T + T +T ST P T S
Sbjct: 4671 SSSTQTSGTPPSLTTTATTI--TATGSTTNPSSTPGTTPITPVLTSTATTPAATSSKATS 4728
Query: 191 TSIPRRKKLICVTEVFMETSTMSTET 216
+S PR + V T+T ST T
Sbjct: 4729 SSSPRTATTL---PVLTSTATKSTAT 4751
>gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 33.5 bits (75), Expect = 0.26
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 131 SSDTWTNSCIPEIITTKDPIFNTQ-TATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPA 189
+S T T+S I TT I +T T++ TT + ++ S+ S S + T+T +
Sbjct: 122 TSSTSTSSFITSSFTTSTSITSTSSTSSFTTSTATTSTSISITSTSSISSSITSTSTSTT 181
Query: 190 STSIPRRKKLICVTEVFMETSTMSTETEPF 219
STS + T TST ++ + F
Sbjct: 182 STSSNSTTSTVTSTSTSTSTSTSTSTSSTF 211
Score = 29.3 bits (64), Expect = 4.9
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 132 SDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPAST 191
+ T T++ +T + +T T+T T+ + ST++ + ST TT+ A++
Sbjct: 174 TSTSTSTTSTSSNSTTSTVTSTSTSTSTSTSTSTSSTFTSTTSTSTTSTSTTSTSTSATS 233
Query: 192 SI----PRRKKLICVTEVFM 207
SI P +K+ + F+
Sbjct: 234 SIRKLTPHQKQCGALASAFL 253
>gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 33.5 bits (75), Expect = 0.26
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 131 SSDTWTNSCIPEIITTKDPIFNTQ-TATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPA 189
+S T T+S I TT I +T T++ TT + ++ S+ S S + T+T +
Sbjct: 122 TSSTSTSSFITSSFTTSTSITSTSSTSSFTTSTATTSTSISITSTSSISSSITSTSTSTT 181
Query: 190 STSIPRRKKLICVTEVFMETSTMSTETEPF 219
STS + T TST ++ + F
Sbjct: 182 STSSNSTTSTVTSTSTSTSTSTSTSTSSTF 211
Score = 29.3 bits (64), Expect = 4.9
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 132 SDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPAST 191
+ T T++ +T + +T T+T T+ + ST++ + ST TT+ A++
Sbjct: 174 TSTSTSTTSTSSNSTTSTVTSTSTSTSTSTSTSTSSTFTSTTSTSTTSTSTTSTSTSATS 233
Query: 192 SI----PRRKKLICVTEVFM 207
SI P +K+ + F+
Sbjct: 234 SIRKLTPHQKQCGALASAFL 253
>gi|150417978 platelet glycoprotein Ib alpha polypeptide precursor
[Homo sapiens]
Length = 639
Score = 33.1 bits (74), Expect = 0.34
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 136 TNSCIPEI---ITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPASTS 192
T+ +PE +TT +P + T T+E S +T S P+PTT P P T
Sbjct: 388 TSEPVPEPAPNMTTLEPTPSPTTPEPTSEPAPSPTTPEPTS--EPAPSPTTPEPTPIPTI 445
Query: 193 IPRRKKLICVTEVFMETSTMSTETEP 218
L+ T + ST T T+P
Sbjct: 446 ATSPTILVSATSLITPKSTFLTTTKP 471
>gi|169167859 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 214
Score = 32.7 bits (73), Expect = 0.44
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 131 SSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPAS 190
++ T T + I ITT T T T TT I + +T + + +TI TTT ++
Sbjct: 120 TTTTTTTTTITTTITTTITT-TTITTTTTTTTITTTTTITTTTTTTTITTTTTTTITTST 178
Query: 191 TSIPRRKKLICVTEVFMETSTMSTET 216
+ I T T+T++T T
Sbjct: 179 ITTTTTSTTITTTTTITTTTTITTTT 204
Score = 30.0 bits (66), Expect = 2.9
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 149 PIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPPAPASTSIPRRKKLICVTEVFME 208
P T T T TT + +T ++ + +TI TTT +T+ +T +
Sbjct: 56 PTTTTTTTTTTTITTTTTTTTTITTTTTTITTTTTTTITTTTTTTTTITTTTTITTTTIT 115
Query: 209 TSTMSTET 216
T+T +T T
Sbjct: 116 TTTTTTTT 123
Score = 28.9 bits (63), Expect = 6.4
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 134 TWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDS-TYSVASPYSTIPAPTTTPPAPASTS 192
T T + I TT I T T T TT + + T + +TI TTT +T+
Sbjct: 69 TTTTTTTTTITTTTTTITTTTTTTITTTTTTTTTITTTTTITTTTITTTTTTTTTTTTTT 128
Query: 193 IPRRKKLICVTEVFMETSTMSTET 216
I T T+T +T T
Sbjct: 129 ITTTITTTITTTTITTTTTTTTIT 152
Score = 28.5 bits (62), Expect = 8.4
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 131 SSDTWTNSCIPEIITTKDPIFNTQTATQTTEFIVSDSTYSVASPYSTIPAPTTTPP--AP 188
++ T T + TT I T T T TT I + +T + + +TI TTT
Sbjct: 110 TTTTITTTTTTTTTTTTTTITTTITTTITTTTITTTTTTTTITTTTTITTTTTTTTITTT 169
Query: 189 ASTSIPRRKKLICVTEVFMETSTMSTET 216
+T+I T + T+T T T
Sbjct: 170 TTTTITTSTITTTTTSTTITTTTTITTT 197
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 32.7 bits (73), Expect = 0.44
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 118 VPVSRQFAAYCYNSSDTWTNSCIPEI-ITTKDPIFNTQTATQTTEFIVSDSTYSVASPYS 176
VP + A ++++ T+ PE + T P F+T T +T +++ + +A+ S
Sbjct: 1416 VPSTGPVTATSFHATTTYPTPSHPETTLPTHVPPFSTSLVTPSTHTVITPTHAQMATSAS 1475
Query: 177 TIPAPTTTPPAPAS 190
APT T P P +
Sbjct: 1476 NHSAPTGTIPPPTT 1489
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,809,587
Number of Sequences: 37866
Number of extensions: 520709
Number of successful extensions: 4587
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 3872
Number of HSP's gapped (non-prelim): 709
length of query: 322
length of database: 18,247,518
effective HSP length: 102
effective length of query: 220
effective length of database: 14,385,186
effective search space: 3164740920
effective search space used: 3164740920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.