Guide to the Human Genome
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Name: NUDT1 Sequence: fasta or formatted (156aa) NCBI GI: 40288276
Description:

nudix-type motif 1 isoform p18

Referenced in:

Nucleotide Pathways

Other entries for this name:
alt mRNA [156aa] nudix-type motif 1 isoform p18
alt prot [179aa] nudix-type motif 1 isoform p22
alt mRNA [156aa] nudix-type motif 1 isoform p18
alt prot [179aa] nudix-type motif 1 isoform p22
alt mRNA [156aa] nudix-type motif 1 isoform p18
alt prot [179aa] nudix-type motif 1 isoform p22
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.6          4           1
 C cysteine            1.3          2           1
 D aspartate           7.7         12           2
 E glutamate           7.7         12           2
 F phenylalanine       7.1         11           1
 G glycine            10.3         16           2
 H histidine           1.9          3           1
 I isoleucine          3.2          5           1
 K lysine              5.8          9           3
 L leucine            10.3         16           3
 M methionine          3.2          5           1
 N asparagine          0.6          1           1
 P proline             4.5          7           1
 Q glutamine           7.1         11           1
 R arginine            5.1          8           2
 S serine              3.2          5           1
 T threonine           5.1          8           1
 V valine              8.3         13           1
 W tryptophan          2.6          4           1
 Y tyrosine            2.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nudix-type motif 1 isoform p18 
NUDT1                 1.000   nudix-type motif 1 isoform p22 
NUDT1                 1.000   nudix-type motif 1 isoform p18 
NUDT1                 1.000   nudix-type motif 1 isoform p22 
NUDT1                 1.000   nudix-type motif 1 isoform p18 
NUDT1                 1.000   nudix-type motif 1 isoform p22 
NUDT1                 1.000   nudix-type motif 1 isoform p18 
NUDT15                0.066   nudix-type motif 15 
NUDT12                0.059   nudix-type motif 12 
NUDT13                0.036   nudix-type motif 13 
NUDT18                0.030   nudix (nucleoside diphosphate linked moiety X)-type...
NUDT17                0.013   nudix (nucleoside diphosphate linked moiety X)-type ...
ABCC12                0.013   ATP-binding cassette protein C12 
NUDT5                 0.010   nudix-type motif 5 
SCN1A                 0.010   sodium channel, voltage-gated, type I, alpha 
NPSR1                 0.010   G protein-coupled receptor for asthma susceptibility...
NPSR1                 0.010   G protein-coupled receptor for asthma susceptibility...
B3GALTL               0.010   beta 1,3-galactosyltransferase-like 
TAOK2                 0.010   TAO kinase 2 isoform 2 
SERPINB11             0.010   serpin peptidase inhibitor, clade B, member 11 [Hom...
SYAP1                 0.007   SYAP1 protein 
NPHS1                 0.007   nephrin precursor 
ZFP106                0.007   zinc finger protein 106 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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