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Search of human proteins with 40255020
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40255020 MYST/Esa1-associated factor 6 [Homo sapiens]
(201 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40255020 MYST/Esa1-associated factor 6 [Homo sapiens] 405 e-113
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 37 0.015
gi|153945715 myosin VC [Homo sapiens] 35 0.033
gi|45935385 SAM and SH3 domain containing 1 [Homo sapiens] 34 0.096
gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens] 33 0.21
gi|91206456 hypothetical protein LOC257415 isoform 1 [Homo sapiens] 33 0.21
gi|27883882 P18SRP protein [Homo sapiens] 33 0.21
gi|31543535 R3H domain containing 1 [Homo sapiens] 32 0.28
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 32 0.28
gi|150170670 piccolo isoform 2 [Homo sapiens] 32 0.28
gi|150378539 piccolo isoform 1 [Homo sapiens] 32 0.28
gi|50962817 TWIST neighbor [Homo sapiens] 32 0.28
gi|151301228 formin binding protein 3 [Homo sapiens] 32 0.28
gi|22212927 nuclear transcription factor, X-box binding 1 isofor... 32 0.36
gi|22212925 nuclear transcription factor, X-box binding 1 isofor... 32 0.36
gi|21361137 nuclear transcription factor, X-box binding 1 isofor... 32 0.36
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 32 0.36
gi|212276104 leucine rich repeat (in FLII) interacting protein 1... 32 0.36
gi|212276096 leucine rich repeat (in FLII) interacting protein 1... 32 0.36
gi|212276070 leucine rich repeat (in FLII) interacting protein 1... 32 0.36
gi|124249396 coiled-coil domain containing 30 [Homo sapiens] 32 0.47
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 32 0.47
gi|28416946 myosin 18A isoform a [Homo sapiens] 32 0.47
gi|19913408 DNA topoisomerase II, beta isozyme [Homo sapiens] 31 0.62
gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain ... 31 0.62
gi|22027627 TNF receptor-associated factor 5 [Homo sapiens] 31 0.62
gi|77404348 TNF receptor-associated factor 5 [Homo sapiens] 31 0.62
gi|11321603 TNF receptor-associated factor 5 [Homo sapiens] 31 0.62
gi|219842214 protein phosphatase 1, regulatory (inhibitor) subun... 31 0.81
gi|219842212 protein phosphatase 1, regulatory (inhibitor) subun... 31 0.81
>gi|40255020 MYST/Esa1-associated factor 6 [Homo sapiens]
Length = 201
Score = 405 bits (1041), Expect = e-113
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MAMHNKAAPPQIPDTRRELAELVKRKQELAETLANLERQIYAFEGSYLEDTQMYGNIIRG 60
MAMHNKAAPPQIPDTRRELAELVKRKQELAETLANLERQIYAFEGSYLEDTQMYGNIIRG
Sbjct: 1 MAMHNKAAPPQIPDTRRELAELVKRKQELAETLANLERQIYAFEGSYLEDTQMYGNIIRG 60
Query: 61 WDRYLTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGT 120
WDRYLTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGT
Sbjct: 61 WDRYLTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGT 120
Query: 121 ESDTSPDFHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRHSPS 180
ESDTSPDFHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRHSPS
Sbjct: 121 ESDTSPDFHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRHSPS 180
Query: 181 GMFDYDFEIDLKLNKKPRADY 201
GMFDYDFEIDLKLNKKPRADY
Sbjct: 181 GMFDYDFEIDLKLNKKPRADY 201
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 36.6 bits (83), Expect = 0.015
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 10/141 (7%)
Query: 58 IRGWDRYLTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPG 117
+ G + LT + +S+S + + +E + ++ A A +AL+ L K+ P
Sbjct: 410 VGGGQKLLTRKADSSSSEEESSSSEEEKTKKMVATTKPKATAKAALS-----LPAKQAPQ 464
Query: 118 SGTESDTSPDFHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRH 177
+S + D + S+E+ E S KPQK A + S+ K + +
Sbjct: 465 GSRDSSSDSD-----SSSSEEEEEKTSKSAVKKKPQKVAGGAAPSKPASAKKGKAESSNS 519
Query: 178 SPSGMFDYDFEIDLKLNKKPR 198
S S + E LK PR
Sbjct: 520 SSSDDSSEEEEEKLKGKGSPR 540
Score = 28.1 bits (61), Expect = 5.2
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
Query: 68 QKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGTESDTSPD 127
+K S+S ++ + + +E + +K + A V G + E S ES D
Sbjct: 80 KKASSSDSEDSSEEEEEVQGPPAKKAAVPAKRVGLPPG--KAAAKASESSSSEESSDDDD 137
Query: 128 FHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNK 174
+Q+ +P Q+ + P+KA SS S S + KN+
Sbjct: 138 EEDQKKQPVQKGVKP-QAKAAKAPPKKAKSSDSDSDSSSEDEPPKNQ 183
>gi|153945715 myosin VC [Homo sapiens]
Length = 1742
Score = 35.4 bits (80), Expect = 0.033
Identities = 43/189 (22%), Positives = 76/189 (40%), Gaps = 32/189 (16%)
Query: 12 IPDTRRELAELVKRKQELAETLANLERQIYAFEGSYLEDTQMYGNIIRGWDRYLTNQKNS 71
IPD +++++EL K+KQ+L L Q +G E L+NQ +
Sbjct: 1211 IPDFKQQISELEKQKQDLE---IRLNEQAEKMKGKLEE---------------LSNQLHR 1252
Query: 72 NSKNDRRNRKFKEAE-RLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGTESDTSPDFHN 130
+ + + RK EA+ + +K + + D L ++ E TES+ +F
Sbjct: 1253 SQEEEGTQRKALEAQNEIHTKEKEKLIDKIQEMQEASDHLKKQFE----TESEVKCNFRQ 1308
Query: 131 Q------ENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRHSPSGMFD 184
+ EN +E+ + D ++ ++ Q S + G + H K GM
Sbjct: 1309 EASRLTLENRDLEEELDMKDRVIKKLQDQVKTLSKTIGKANDVHSSSGPKEY---LGMLQ 1365
Query: 185 YDFEIDLKL 193
Y E + KL
Sbjct: 1366 YKREDEAKL 1374
>gi|45935385 SAM and SH3 domain containing 1 [Homo sapiens]
Length = 1247
Score = 33.9 bits (76), Expect = 0.096
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 70 NSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGTESDTSPDFH 129
NS+ + +KE + + S ++ V ++ + + K+ S +E D+ D
Sbjct: 424 NSDPMGKEGDFVYKEVIKSPTASRISLGKKVKSVKETMRKRMSKKYSSSVSEQDSGLDGM 483
Query: 130 NQENEPSQEDPEDLD-------GSVQGVKPQKAASSTSSG 162
PSQ DPE LD GSV+ ++ + S+ SG
Sbjct: 484 PGSPPPSQPDPEHLDKPKLKAGGSVESLRSSLSGQSSMSG 523
>gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens]
Length = 237
Score = 32.7 bits (73), Expect = 0.21
Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 20/130 (15%)
Query: 66 TNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGTESDTS 125
++ ++ + K +R +K K S+SS++ + S +D L +K++ GTE +
Sbjct: 109 SDSEDEDKKQGKRRKKKKNRSHKSSESSMSETESDS-----KDSLKKKKKSKDGTEKEKD 163
Query: 126 PDFHNQENEPSQEDP----EDLDGS--VQGVKPQKAASS---------TSSGSHHSSHKK 170
+++ + ED E L S ++ V+ +K SS T H H K
Sbjct: 164 IKGLSKKRKMYSEDKPLSSESLSESEYIEEVRAKKKKSSEEREKATEKTKKKKKHKKHSK 223
Query: 171 RKNKNRHSPS 180
+K K S S
Sbjct: 224 KKKKKAASSS 233
>gi|91206456 hypothetical protein LOC257415 isoform 1 [Homo sapiens]
Length = 247
Score = 32.7 bits (73), Expect = 0.21
Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 20/130 (15%)
Query: 66 TNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGTESDTS 125
++ ++ + K +R +K K S+SS++ + S +D L +K++ GTE +
Sbjct: 119 SDSEDEDKKQGKRRKKKKNRSHKSSESSMSETESDS-----KDSLKKKKKSKDGTEKEKD 173
Query: 126 PDFHNQENEPSQEDP----EDLDGS--VQGVKPQKAASS---------TSSGSHHSSHKK 170
+++ + ED E L S ++ V+ +K SS T H H K
Sbjct: 174 IKGLSKKRKMYSEDKPLSSESLSESEYIEEVRAKKKKSSEEREKATEKTKKKKKHKKHSK 233
Query: 171 RKNKNRHSPS 180
+K K S S
Sbjct: 234 KKKKKAASSS 243
>gi|27883882 P18SRP protein [Homo sapiens]
Length = 155
Score = 32.7 bits (73), Expect = 0.21
Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 11/117 (9%)
Query: 62 DRYLTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGTE 121
D L S+ +D N + + + L K + + ++K+ S +
Sbjct: 39 DIVLDVSSTSSEDSDEENEELNKLQALQEKR-INEEEEKKKEKSKEKIKLKKKRKRSYSS 97
Query: 122 SDTSPDFHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRHS 178
S T D Q+ + Q+ K ++ S + G HH KK++ K +HS
Sbjct: 98 SSTEEDTSKQKKQKYQKKE----------KKKEKKSKSKKGKHHKKEKKKRKKEKHS 144
>gi|31543535 R3H domain containing 1 [Homo sapiens]
Length = 1099
Score = 32.3 bits (72), Expect = 0.28
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 21/117 (17%)
Query: 67 NQKNSNSKNDRRNRKFKEAE--------RLFSKSSVTSAAAVSALAGVQDQ--------- 109
NQ K+DRR++ +E E R+FS+ S+ S +QD+
Sbjct: 268 NQMRIRLKDDRRSKSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRLQDEDASSTQQRR 327
Query: 110 ---LIEKREPGSGTES-DTSPDFHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSG 162
+ K G T S +S + + +EP D D S++ +KP +S+ SG
Sbjct: 328 QIFRVNKDASGRSTNSHQSSTENELKYSEPRPWSSTDSDSSLRNLKPAVTKASSFSG 384
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 32.3 bits (72), Expect = 0.28
Identities = 37/172 (21%), Positives = 68/172 (39%), Gaps = 28/172 (16%)
Query: 23 VKRKQELAETLANLERQIYAFEGSYLEDTQMYGNIIRGWDRYLTNQ-------------- 68
V+ QEL ETL E + + E S +E+ Q + R L Q
Sbjct: 1473 VQEMQELKETLNQAETKSKSLE-SQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQD 1531
Query: 69 -KNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGTESDTSPD 127
++ ++ ++ ++ E E K+ V + + ++ LAGV+DQL ++ E
Sbjct: 1532 LQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEE----------- 1580
Query: 128 FHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRHSP 179
Q N + ++LD + +K Q + H++R + R P
Sbjct: 1581 -LKQRNGALDQQKDELDVRITALKSQYEGRISRLERELREHQERHLEQRDEP 1631
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 32.3 bits (72), Expect = 0.28
Identities = 43/175 (24%), Positives = 66/175 (37%), Gaps = 37/175 (21%)
Query: 44 EGSYLEDTQMYGNIIRGWDRYLTNQKNSNSKND--RRNRKFKEAERLF----------SK 91
E E+T+ G I G R LT + +++ D RR+ E + F +K
Sbjct: 1590 ESQKKEETKGKGKITAGKHRRLTRKSSTSIDEDAGRRHSWHDEDDEAFDESPELKYRETK 1649
Query: 92 SSVTSAAAVSALAGVQ-------DQLIEKREPGSGTESDTSPDFHNQ---ENEPSQEDPE 141
S + V+ G++ + I + ++ TS F + E E + PE
Sbjct: 1650 SQESEELVVTGGGGLRRFKTIELNSTIADKYSAESSQKKTSLYFDEEPELEMESLTDSPE 1709
Query: 142 DL---DGS--------VQGVKPQKAAS----STSSGSHHSSHKKRKNKNRHSPSG 181
D +GS G P +S S SS SH K++ K RH P G
Sbjct: 1710 DRSRGEGSSSLHASSFTPGTSPTSVSSLDEDSDSSPSHKKGESKQQRKARHRPHG 1764
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 32.3 bits (72), Expect = 0.28
Identities = 43/175 (24%), Positives = 66/175 (37%), Gaps = 37/175 (21%)
Query: 44 EGSYLEDTQMYGNIIRGWDRYLTNQKNSNSKND--RRNRKFKEAERLF----------SK 91
E E+T+ G I G R LT + +++ D RR+ E + F +K
Sbjct: 1590 ESQKKEETKGKGKITAGKHRRLTRKSSTSIDEDAGRRHSWHDEDDEAFDESPELKYRETK 1649
Query: 92 SSVTSAAAVSALAGVQ-------DQLIEKREPGSGTESDTSPDFHNQ---ENEPSQEDPE 141
S + V+ G++ + I + ++ TS F + E E + PE
Sbjct: 1650 SQESEELVVTGGGGLRRFKTIELNSTIADKYSAESSQKKTSLYFDEEPELEMESLTDSPE 1709
Query: 142 DL---DGS--------VQGVKPQKAAS----STSSGSHHSSHKKRKNKNRHSPSG 181
D +GS G P +S S SS SH K++ K RH P G
Sbjct: 1710 DRSRGEGSSSLHASSFTPGTSPTSVSSLDEDSDSSPSHKKGESKQQRKARHRPHG 1764
>gi|50962817 TWIST neighbor [Homo sapiens]
Length = 338
Score = 32.3 bits (72), Expect = 0.28
Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 12/117 (10%)
Query: 67 NQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGTESDTSP 126
N +K ++ +K K+ E S T A + +++ ++ +G
Sbjct: 217 NGTEEAAKKPKKKKKKKDPETYEVDSGTTKLADDADDTPMEESALQNTNNANGI------ 270
Query: 127 DFHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRHSPSGMF 183
E EP ++ + VQ P S +S + S HKK+K K +HS F
Sbjct: 271 ----WEEEPKKKKKKKKHQEVQDQDPVFQGSDSSG--YQSDHKKKKKKRKHSEEAEF 321
>gi|151301228 formin binding protein 3 [Homo sapiens]
Length = 930
Score = 32.3 bits (72), Expect = 0.28
Identities = 46/205 (22%), Positives = 83/205 (40%), Gaps = 21/205 (10%)
Query: 14 DTRRELAELVKRKQELAETLANLERQIYAFEGSYLEDTQMYGNIIRGWDRYLTNQKNSNS 73
D ++ + +++K K + E E + + T GNI ++ L +
Sbjct: 647 DEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEARER 706
Query: 74 KNDRRN-RKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEK--REPGSGT---ESDTSPD 127
+ ++ RK K E F KS + AA L V + + E+ +EP ES+
Sbjct: 707 EREKEEARKMKRKESAF-KSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRI 765
Query: 128 F----HNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSH------HSSHKKRKNKNR- 176
F H E+E ++ S + K + S + SGS HS K++++++R
Sbjct: 766 FKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRS 825
Query: 177 ---HSPSGMFDYDFEIDLKLNKKPR 198
HS S + ++ K KK +
Sbjct: 826 ASEHSSSAESERSYKKSKKHKKKSK 850
>gi|22212927 nuclear transcription factor, X-box binding 1 isoform 3
[Homo sapiens]
Length = 833
Score = 32.0 bits (71), Expect = 0.36
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 23/118 (19%)
Query: 65 LTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGTESDT 124
L NQ +N++ + + K+A+ L ++S T AG++ S T S++
Sbjct: 101 LQNQPWQKLRNEKHHIRVKKAQSLAEQTSDT--------AGLE----------SSTRSES 142
Query: 125 SPDFHNQENEPSQEDPEDLDGSVQGVKPQKAAS---STSSGSHHSSHKKRKNKNRHSP 179
D +E+ PS+ + E + +G KP+KA S G K + NR +P
Sbjct: 143 GTDL--REHSPSESEKEVVGADPRGAKPKKATQFVYSYGRGPKVKGKLKCEWSNRTTP 198
>gi|22212925 nuclear transcription factor, X-box binding 1 isoform 2
[Homo sapiens]
Length = 1024
Score = 32.0 bits (71), Expect = 0.36
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 23/118 (19%)
Query: 65 LTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGTESDT 124
L NQ +N++ + + K+A+ L ++S T AG++ S T S++
Sbjct: 101 LQNQPWQKLRNEKHHIRVKKAQSLAEQTSDT--------AGLE----------SSTRSES 142
Query: 125 SPDFHNQENEPSQEDPEDLDGSVQGVKPQKAAS---STSSGSHHSSHKKRKNKNRHSP 179
D +E+ PS+ + E + +G KP+KA S G K + NR +P
Sbjct: 143 GTDL--REHSPSESEKEVVGADPRGAKPKKATQFVYSYGRGPKVKGKLKCEWSNRTTP 198
>gi|21361137 nuclear transcription factor, X-box binding 1 isoform 1
[Homo sapiens]
Length = 1120
Score = 32.0 bits (71), Expect = 0.36
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 23/118 (19%)
Query: 65 LTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGTESDT 124
L NQ +N++ + + K+A+ L ++S T AG++ S T S++
Sbjct: 101 LQNQPWQKLRNEKHHIRVKKAQSLAEQTSDT--------AGLE----------SSTRSES 142
Query: 125 SPDFHNQENEPSQEDPEDLDGSVQGVKPQKAAS---STSSGSHHSSHKKRKNKNRHSP 179
D +E+ PS+ + E + +G KP+KA S G K + NR +P
Sbjct: 143 GTDL--REHSPSESEKEVVGADPRGAKPKKATQFVYSYGRGPKVKGKLKCEWSNRTTP 198
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 32.0 bits (71), Expect = 0.36
Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 1/113 (0%)
Query: 66 TNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGTESDTS 125
++ NS+ ND N S SS +S ++ S+ + D S SD+S
Sbjct: 777 SDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSS 836
Query: 126 PDFHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRHS 178
+ ++ S D D D S + + SS SS S +SS + + S
Sbjct: 837 NSSDSSDSSDS-SDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSNES 888
Score = 30.0 bits (66), Expect = 1.4
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 9/118 (7%)
Query: 67 NQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGTESDTSP 126
N N N ND+ + +++ S SS +S ++ S+ + D + S ++SD+S
Sbjct: 529 NGNNGNDDNDKSDSGKGKSDSSDSDSSDSSNSSDSSDSSDSD----SSDSNSSSDSDSS- 583
Query: 127 DFHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRHSPSGMFD 184
+ D + D S + SS SS S SS K + S S D
Sbjct: 584 ----DSDSSDSSDSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSDSD 637
Score = 28.9 bits (63), Expect = 3.1
Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 1/115 (0%)
Query: 66 TNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGTESDTS 125
+N +S+ +D + ++ SKS + + + S+ + + + S SD+S
Sbjct: 599 SNSSDSSDSSDSSDSS-DSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSS 657
Query: 126 PDFHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRHSPS 180
++ + S + + D S + SS SS S +SS + + S S
Sbjct: 658 DSSNSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDS 712
>gi|212276104 leucine rich repeat (in FLII) interacting protein 1
isoform 5 [Homo sapiens]
Length = 752
Score = 32.0 bits (71), Expect = 0.36
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 15/83 (18%)
Query: 105 GVQDQLIEKRE-PGS--GTESD----TSPDFHNQENEP-SQEDPEDLDGSVQGVKPQKAA 156
G++D+ K E PGS GTE + T P + +NEP ++P++ QG
Sbjct: 451 GLRDEKPIKTEVPGSPAGTEGNCQEATGPSTVDTQNEPLDMKEPDEEKSDQQG------- 503
Query: 157 SSTSSGSHHSSHKKRKNKNRHSP 179
+ S + +KK+KNK + SP
Sbjct: 504 EALDSSQKKTKNKKKKNKKKKSP 526
>gi|212276096 leucine rich repeat (in FLII) interacting protein 1
isoform 3 [Homo sapiens]
Length = 808
Score = 32.0 bits (71), Expect = 0.36
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 15/83 (18%)
Query: 105 GVQDQLIEKRE-PGS--GTESD----TSPDFHNQENEP-SQEDPEDLDGSVQGVKPQKAA 156
G++D+ K E PGS GTE + T P + +NEP ++P++ QG
Sbjct: 507 GLRDEKPIKTEVPGSPAGTEGNCQEATGPSTVDTQNEPLDMKEPDEEKSDQQG------- 559
Query: 157 SSTSSGSHHSSHKKRKNKNRHSP 179
+ S + +KK+KNK + SP
Sbjct: 560 EALDSSQKKTKNKKKKNKKKKSP 582
>gi|212276070 leucine rich repeat (in FLII) interacting protein 1
isoform 4 [Homo sapiens]
Length = 784
Score = 32.0 bits (71), Expect = 0.36
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 15/83 (18%)
Query: 105 GVQDQLIEKRE-PGS--GTESD----TSPDFHNQENEP-SQEDPEDLDGSVQGVKPQKAA 156
G++D+ K E PGS GTE + T P + +NEP ++P++ QG
Sbjct: 483 GLRDEKPIKTEVPGSPAGTEGNCQEATGPSTVDTQNEPLDMKEPDEEKSDQQG------- 535
Query: 157 SSTSSGSHHSSHKKRKNKNRHSP 179
+ S + +KK+KNK + SP
Sbjct: 536 EALDSSQKKTKNKKKKNKKKKSP 558
>gi|124249396 coiled-coil domain containing 30 [Homo sapiens]
Length = 783
Score = 31.6 bits (70), Expect = 0.47
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 12/117 (10%)
Query: 11 QIPDTRRELAELVKRKQELAETLANLERQIYAFEGSYLEDTQMYGNIIRGWDRYLTNQK- 69
Q+ + +R+ E VK QEL+E L+ L+++ A YL ++ +R ++ QK
Sbjct: 451 QLENEKRKYDEHVKSNQELSEKLSKLQQEKEALREEYLRLLKLLNVHVRNYNEKHHQQKV 510
Query: 70 ----------NSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQ-LIEKRE 115
N D+R +F++ + A + D L+EKR+
Sbjct: 511 KLQKVKYRLTNEVELRDKRINQFEDEIGILQHKIEKEKAIQDQITAQNDTLLLEKRK 567
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 31.6 bits (70), Expect = 0.47
Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 15/112 (13%)
Query: 65 LTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGTESDT 124
LT S SK R+R A SKS S+++ S+ S + + +
Sbjct: 546 LTVHPESKSKTKTRSRSRGRARNKTSKSRSRSSSSSSS---------------SSSSTSS 590
Query: 125 SPDFHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNR 176
S + S S G + ++SSTSS S S + + NR
Sbjct: 591 SSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRGHNR 642
>gi|28416946 myosin 18A isoform a [Homo sapiens]
Length = 2054
Score = 31.6 bits (70), Expect = 0.47
Identities = 30/151 (19%), Positives = 58/151 (38%), Gaps = 14/151 (9%)
Query: 5 NKAAPPQIPDTRRELAELVKRKQELAETLANLERQIYAFEG---SYLEDTQMYGNIIRGW 61
NK Q+ DT+ E+ EL +++ E + LE + + E S D ++ I
Sbjct: 1873 NKRLQRQLRDTKEEMGELARKEAEASRKKHELEMDLESLEAANQSLQADLKLAFKRIGDL 1932
Query: 62 DRYLTNQKNSNSKNDRRN------RKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKRE 115
+ ++ S+ D N K+++ + S + + GV+ L + +
Sbjct: 1933 QAAIEDEMESDENEDLINSLQDMVTKYQKRKNKLEGDSDVDSELEDRVDGVKSWLSKNKG 1992
Query: 116 PGSGTESD-----TSPDFHNQENEPSQEDPE 141
P D +SP + + P + D E
Sbjct: 1993 PSKAASDDGSLKSSSPTSYWKSLAPDRSDDE 2023
>gi|19913408 DNA topoisomerase II, beta isozyme [Homo sapiens]
Length = 1621
Score = 31.2 bits (69), Expect = 0.62
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 145 GSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRHSPSGMFDYDFEIDL 191
G +G K +KA+ S + G ++ K K ++ FD D ++D+
Sbjct: 1534 GKGRGAKKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVDI 1580
>gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain
containing B [Homo sapiens]
Length = 546
Score = 31.2 bits (69), Expect = 0.62
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
Query: 68 QKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGTESDTSPD 127
+K+ K+DRR+R K + K S + + + + + KR E +
Sbjct: 401 KKHKEDKDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHK 460
Query: 128 FHNQE--NEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRHSPS 180
++E N+ S+ + SV+ K ++ + S S K+R +K HS S
Sbjct: 461 NESKEKSNKRSRSGSQGRTDSVEKSKKREHSPSKEKSRKRSRSKERSHKRDHSDS 515
>gi|22027627 TNF receptor-associated factor 5 [Homo sapiens]
Length = 557
Score = 31.2 bits (69), Expect = 0.62
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 11 QIPDTRRELAELVKRKQELAETLANLER------QIYAFEGSYLEDTQMYGNII 58
QI D + L + + Q+LAET+ LE+ Q++ GS+L + Q++ + I
Sbjct: 263 QISDLHKSLEQKESKIQQLAETIKKLEKEFKQFAQLFGKNGSFLPNIQVFASHI 316
>gi|77404348 TNF receptor-associated factor 5 [Homo sapiens]
Length = 557
Score = 31.2 bits (69), Expect = 0.62
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 11 QIPDTRRELAELVKRKQELAETLANLER------QIYAFEGSYLEDTQMYGNII 58
QI D + L + + Q+LAET+ LE+ Q++ GS+L + Q++ + I
Sbjct: 263 QISDLHKSLEQKESKIQQLAETIKKLEKEFKQFAQLFGKNGSFLPNIQVFASHI 316
>gi|11321603 TNF receptor-associated factor 5 [Homo sapiens]
Length = 557
Score = 31.2 bits (69), Expect = 0.62
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 11 QIPDTRRELAELVKRKQELAETLANLER------QIYAFEGSYLEDTQMYGNII 58
QI D + L + + Q+LAET+ LE+ Q++ GS+L + Q++ + I
Sbjct: 263 QISDLHKSLEQKESKIQQLAETIKKLEKEFKQFAQLFGKNGSFLPNIQVFASHI 316
>gi|219842214 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform b [Homo sapiens]
Length = 943
Score = 30.8 bits (68), Expect = 0.81
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 6/112 (5%)
Query: 62 DRYLTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGTE 121
D +Q+ + S+ R++R+ + L S ++Q E++E +
Sbjct: 588 DEESESQRKARSRQARQSRRSTQGVTLTDLQEAEKTIGRSRSTRTREQENEEKEKEEKEK 647
Query: 122 SDTSPDFHNQENEPSQED------PEDLDGSVQGVKPQKAASSTSSGSHHSS 167
D +E+E S+ED D + Q +P +SST+ S S+
Sbjct: 648 QDKEKQEEKKESETSREDEYKQKYSRTYDETYQRYRPVSTSSSTTPSSSLST 699
>gi|219842212 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform a [Homo sapiens]
Length = 1030
Score = 30.8 bits (68), Expect = 0.81
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 6/112 (5%)
Query: 62 DRYLTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAVSALAGVQDQLIEKREPGSGTE 121
D +Q+ + S+ R++R+ + L S ++Q E++E +
Sbjct: 675 DEESESQRKARSRQARQSRRSTQGVTLTDLQEAEKTIGRSRSTRTREQENEEKEKEEKEK 734
Query: 122 SDTSPDFHNQENEPSQED------PEDLDGSVQGVKPQKAASSTSSGSHHSS 167
D +E+E S+ED D + Q +P +SST+ S S+
Sbjct: 735 QDKEKQEEKKESETSREDEYKQKYSRTYDETYQRYRPVSTSSSTTPSSSLST 786
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.124 0.344
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,692,067
Number of Sequences: 37866
Number of extensions: 328985
Number of successful extensions: 2095
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 145
Number of HSP's that attempted gapping in prelim test: 1973
Number of HSP's gapped (non-prelim): 276
length of query: 201
length of database: 18,247,518
effective HSP length: 97
effective length of query: 104
effective length of database: 14,574,516
effective search space: 1515749664
effective search space used: 1515749664
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.