Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MEAF6 Sequence: fasta or formatted (201aa) NCBI GI: 40255020
Description:

MYST/Esa1-associated factor 6

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         16           3
 C cysteine            0.0          0           0
 D aspartate           7.0         14           1
 E glutamate           8.5         17           1
 F phenylalanine       3.0          6           1
 G glycine             5.0         10           1
 H histidine           3.0          6           2
 I isoleucine          3.0          6           2
 K lysine              9.0         18           2
 L leucine             6.5         13           1
 M methionine          2.0          4           1
 N asparagine          6.5         13           1
 P proline             5.0         10           2
 Q glutamine           5.5         11           1
 R arginine            7.0         14           2
 S serine             10.9         22           2
 T threonine           4.0          8           1
 V valine              3.0          6           1
 W tryptophan          0.5          1           1
 Y tyrosine            3.0          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   MYST/Esa1-associated factor 6 
NOLC1                 0.032   nucleolar and coiled-body phosphoprotein 1 
MYO5C                 0.026   myosin VC 
SASH1                 0.024   SAM and SH3 domain containing 1 
FAM133B               0.021   hypothetical protein LOC257415 isoform 2 
FAM133B               0.021   hypothetical protein LOC257415 isoform 1 
SFRS12IP1             0.021   P18SRP protein 
R3HDM1                0.018   R3H domain containing 1 
TPR                   0.018   nuclear pore complex-associated protein TPR 
PCLO                  0.018   piccolo isoform 2 
PCLO                  0.018   piccolo isoform 1 
TWISTNB               0.018   TWIST neighbor 
PRPF40A               0.018   formin binding protein 3 
NFX1                  0.018   nuclear transcription factor, X-box binding 1 isofor...
NFX1                  0.018   nuclear transcription factor, X-box binding 1 isofor...
NFX1                  0.018   nuclear transcription factor, X-box binding 1 isofor...
DSPP                  0.018   dentin sialophosphoprotein preproprotein 
LRRFIP1               0.018   leucine rich repeat (in FLII) interacting protein 1...
LRRFIP1               0.018   leucine rich repeat (in FLII) interacting protein 1...
LRRFIP1               0.018   leucine rich repeat (in FLII) interacting protein 1...
CCDC30                0.018   coiled-coil domain containing 30 
PNN                   0.018   pinin, desmosome associated protein 
MYO18A                0.018   myosin 18A isoform a 
TOP2B                 0.016   DNA topoisomerase II, beta isozyme 
PRPF38B               0.016   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
TRAF5                 0.016   TNF receptor-associated factor 5 
TRAF5                 0.016   TNF receptor-associated factor 5 
TRAF5                 0.016   TNF receptor-associated factor 5 
PPP1R12A              0.016   protein phosphatase 1, regulatory (inhibitor) subun...
PPP1R12A              0.016   protein phosphatase 1, regulatory (inhibitor) subun...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press