Guide to the Human Genome
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Name: PLXDC2 Sequence: fasta or formatted (529aa) NCBI GI: 40255005
Description:

plexin domain containing 2 precursor

Referenced in:

Semaphorins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         35           3
 C cysteine            1.9         10           1
 D aspartate           6.4         34           2
 E glutamate           5.3         28           3
 F phenylalanine       5.3         28           2
 G glycine             5.9         31           2
 H histidine           3.8         20           2
 I isoleucine          5.7         30           2
 K lysine              3.6         19           2
 L leucine             6.8         36           3
 M methionine          2.1         11           1
 N asparagine          3.8         20           2
 P proline             4.5         24           1
 Q glutamine           4.7         25           2
 R arginine            6.0         32           3
 S serine              7.4         39           2
 T threonine           8.3         44           4
 V valine              7.6         40           3
 W tryptophan          1.3          7           1
 Y tyrosine            3.0         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   plexin domain containing 2 precursor 
PLXDC1                0.448   plexin domain containing 1 precursor 
ZNF512B               0.012   zinc finger protein 512B 
PLXNA2                0.009   plexin A2 
PLXNC1                0.009   plexin C1 
LOC730474             0.007   PREDICTED: hypothetical protein, partial 
PLXNA1                0.007   plexin A1 
CD164                 0.007   CD164 molecule, sialomucin isoform 4 
CD164                 0.007   CD164 molecule, sialomucin isoform 1 
MET                   0.006   met proto-oncogene isoform b precursor 
MET                   0.006   met proto-oncogene isoform a precursor 
PLXNB1                0.006   plexin B1 
PLXNB1                0.006   plexin B1 
TMEM123               0.006   transmembrane protein 123 precursor 
EMR3                  0.006   egf-like module-containing mucin-like receptor 3 [H...
FLJ20674              0.006   hypothetical protein FLJ20674 
LOC100294236          0.006   PREDICTED: similar to diffuse panbronchiolitis crit...
ITGB7                 0.006   integrin, beta 7 
CD164                 0.006   CD164 molecule, sialomucin isoform 2 
ANK3                  0.006   ankyrin 3 isoform 1 
PLXNA3                0.006   plexin A3 
MUC17                 0.005   mucin 17 
CASC5                 0.005   cancer susceptibility candidate 5 isoform 2 
CASC5                 0.005   cancer susceptibility candidate 5 isoform 1 
LOC100131251          0.005   PREDICTED: hypothetical protein 
LOC100131251          0.005   PREDICTED: hypothetical protein 
MYH15                 0.005   myosin, heavy polypeptide 15 
MST1R                 0.005   macrophage stimulating 1 receptor precursor 
LOC730474             0.005   PREDICTED: hypothetical protein 
CARS2                 0.005   cysteinyl-tRNA synthetase 2, mitochondrial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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