Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CD164 Sequence: fasta or formatted (184aa) NCBI GI: 215422421
Description:

CD164 molecule, sialomucin isoform 2

Referenced in:

Mucins

Other entries for this name:
alt prot [197aa] CD164 molecule, sialomucin isoform 1
alt prot [178aa] CD164 molecule, sialomucin isoform 3
alt prot [189aa] CD164 molecule, sialomucin isoform 4
alt prot [157aa] CD164 molecule, sialomucin isoform 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         10           2
 C cysteine            6.0         11           1
 D aspartate           2.7          5           1
 E glutamate           2.7          5           1
 F phenylalanine       4.3          8           2
 G glycine             3.8          7           2
 H histidine           1.6          3           1
 I isoleucine          2.7          5           1
 K lysine              4.3          8           1
 L leucine             7.1         13           2
 M methionine          0.5          1           1
 N asparagine          6.0         11           2
 P proline             6.0         11           1
 Q glutamine           2.7          5           1
 R arginine            2.7          5           1
 S serine             12.5         23           1
 T threonine          15.2         28           2
 V valine             10.9         20           2
 W tryptophan          1.1          2           1
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD164 molecule, sialomucin isoform 2 
CD164                 0.975   CD164 molecule, sialomucin isoform 1 
CD164                 0.893   CD164 molecule, sialomucin isoform 3 
CD164                 0.842   CD164 molecule, sialomucin isoform 4 
CD164                 0.667   CD164 molecule, sialomucin isoform 5 
CD164L2               0.121   CD164 sialomucin-like 2 
TMEM123               0.062   transmembrane protein 123 precursor 
MUC2                  0.045   mucin 2 precursor 
LOC729815             0.040   PREDICTED: hypothetical protein 
LOC729815             0.040   PREDICTED: hypothetical protein 
MUC17                 0.040   mucin 17 
LOC100294420          0.040   PREDICTED: similar to mucin 2 
LOC100131251          0.034   PREDICTED: hypothetical protein 
LOC100131251          0.034   PREDICTED: hypothetical protein 
LOC100132635          0.034   PREDICTED: similar to mucin 5, partial 
MUC5B                 0.031   mucin 5, subtype B, tracheobronchial 
LOC100131514          0.031   PREDICTED: similar to hCG1747327, partial 
LOC730474             0.031   PREDICTED: hypothetical protein 
LOC100133790          0.028   PREDICTED: intestinal mucin-like, partial 
MUC5AC                0.028   mucin 5AC 
LOC730474             0.028   PREDICTED: hypothetical protein, partial 
MUC3A                 0.028   PREDICTED: mucin 3A, intestinal 
LOC732156             0.028   PREDICTED: similar to Mucin-3A 
CADM1                 0.025   immunoglobulin superfamily, member 4D isoform 1 [Ho...
MUC4                  0.025   mucin 4 isoform a 
MUC16                 0.023   mucin 16 
LOC284297             0.023   hypothetical protein LOC284297 
POU2F1                0.023   POU class 2 homeobox 1 
LOC729792             0.023   PREDICTED: hypothetical protein 
LOC729792             0.023   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press