Guide to the Human Genome
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Name: TMEM123 Sequence: fasta or formatted (208aa) NCBI GI: 100913218
Description:

transmembrane protein 123 precursor

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         20           2
 C cysteine            0.5          1           1
 D aspartate           2.4          5           1
 E glutamate           2.9          6           1
 F phenylalanine       1.0          2           1
 G glycine             6.7         14           2
 H histidine           3.4          7           1
 I isoleucine          4.8         10           2
 K lysine              3.8          8           2
 L leucine             7.2         15           3
 M methionine          3.8          8           1
 N asparagine          5.3         11           1
 P proline             3.4          7           2
 Q glutamine           1.9          4           1
 R arginine            2.4          5           2
 S serine             15.4         32           2
 T threonine          16.8         35           3
 V valine              6.2         13           1
 W tryptophan          0.5          1           1
 Y tyrosine            1.9          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 123 precursor 
LOC730474             0.095   PREDICTED: hypothetical protein 
LOC730474             0.093   PREDICTED: hypothetical protein, partial 
LOC100131251          0.090   PREDICTED: hypothetical protein 
LOC100131251          0.090   PREDICTED: hypothetical protein 
MUC21                 0.077   mucin 21 
CD164                 0.071   CD164 molecule, sialomucin isoform 1 
LOC729792             0.069   PREDICTED: hypothetical protein 
LOC100294470          0.069   PREDICTED: hypothetical protein, partial 
LOC729792             0.069   PREDICTED: hypothetical protein 
LOC729792             0.069   PREDICTED: hypothetical protein 
LOC100294501          0.069   PREDICTED: hypothetical protein 
LOC100294249          0.069   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.069   PREDICTED: hypothetical protein 
LOC100294204          0.069   PREDICTED: hypothetical protein 
LOC100294136          0.069   PREDICTED: hypothetical protein 
LOC100294091          0.069   PREDICTED: hypothetical protein 
LOC730401             0.069   PREDICTED: hypothetical protein 
LOC100131514          0.063   PREDICTED: similar to hCG1747327, partial 
MUC3A                 0.063   PREDICTED: mucin 3A, cell surface associated, parti...
MUC3A                 0.063   PREDICTED: mucin 3A, intestinal 
LOC732156             0.063   PREDICTED: similar to Mucin-3A 
MUC17                 0.063   mucin 17 
MUC2                  0.061   mucin 2 precursor 
LOC100132635          0.061   PREDICTED: similar to mucin 5, partial 
LOC100133790          0.061   PREDICTED: intestinal mucin-like, partial 
LOC100294420          0.061   PREDICTED: similar to mucin 2 
C11orf24              0.061   hypothetical protein LOC53838 
UBAP2L                0.061   ubiquitin associated protein 2-like isoform a [Homo...
UBAP2L                0.061   ubiquitin associated protein 2-like isoform b [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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