Guide to the Human Genome
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Name: CUL5 Sequence: fasta or formatted (780aa) NCBI GI: 40254446
Description:

Vasopressin-activated calcium-mobilizing receptor-1

Referenced in:

Cullins and SCF Complexes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         49           3
 C cysteine            1.3         10           2
 D aspartate           5.1         40           2
 E glutamate           9.4         73           3
 F phenylalanine       4.4         34           2
 G glycine             2.7         21           1
 H histidine           1.8         14           2
 I isoleucine          5.9         46           2
 K lysine              9.6         75           2
 L leucine            12.2         95           2
 M methionine          3.2         25           1
 N asparagine          5.1         40           2
 P proline             2.9         23           1
 Q glutamine           5.3         41           2
 R arginine            5.3         41           2
 S serine              5.4         42           2
 T threonine           4.5         35           2
 V valine              5.8         45           2
 W tryptophan          1.4         11           1
 Y tyrosine            2.6         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Vasopressin-activated calcium-mobilizing receptor-1 ... 
CUL1                  0.208   cullin 1 
CUL2                  0.176   cullin 2 
CUL3                  0.144   cullin 3 
CUL4B                 0.140   cullin 4B isoform 2 
CUL4B                 0.140   cullin 4B isoform 1 
CUL4A                 0.134   cullin 4A isoform 1 
CUL4A                 0.133   cullin 4A isoform 2 
ANAPC2                0.011   anaphase-promoting complex subunit 2 
MYH15                 0.010   myosin, heavy polypeptide 15 
CCDC89                0.009   coiled-coil domain containing 89 
RPGRIP1L              0.008   RPGRIP1-like isoform b 
RPGRIP1L              0.008   RPGRIP1-like isoform a 
IKBKG                 0.007   inhibitor of kappa light polypeptide gene enhancer ...
ERC1                  0.007   RAB6-interacting protein 2 isoform epsilon 
KTN1                  0.007   kinectin 1 isoform b 
TMF1                  0.007   TATA element modulatory factor 1 
NUMA1                 0.007   nuclear mitotic apparatus protein 1 
DNAH14                0.006   dynein, axonemal, heavy polypeptide 14 isoform 1 [H...
AKAP9                 0.006   A-kinase anchor protein 9 isoform 3 
CEP110                0.006   centrosomal protein 110kDa 
NARG2                 0.005   NMDA receptor regulated 2 isoform a 
IFT74                 0.005   coiled-coil domain containing 2 isoform a 
IFT74                 0.005   coiled-coil domain containing 2 isoform a 
IFT74                 0.005   coiled-coil domain containing 2 isoform a 
CCDC146               0.005   coiled-coil domain containing 146 
CYTH2                 0.005   cytohesin 2 isoform 2 
CYTH2                 0.005   cytohesin 2 isoform 1 
CCDC18                0.005   sarcoma antigen NY-SAR-41 
FKBP15                0.005   FK506 binding protein 15, 133kDa 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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