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Search of human proteins with 40068487
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40068487 von Willebrand factor A domain containing 1 isoform
2 [Homo sapiens]
(233 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40068487 von Willebrand factor A domain containing 1 isoform ... 476 e-135
gi|40068485 von Willebrand factor A domain containing 1 isoform ... 476 e-135
gi|112734845 collagen, type XX, alpha 1 [Homo sapiens] 76 3e-14
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 69 4e-12
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 62 4e-10
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 59 5e-09
gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens] 57 2e-08
gi|20665034 tenascin XB isoform 2 [Homo sapiens] 54 1e-07
gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens] 54 1e-07
gi|47132557 fibronectin 1 isoform 1 preproprotein [Homo sapiens] 53 2e-07
gi|47132551 fibronectin 1 isoform 2 preproprotein [Homo sapiens] 53 2e-07
gi|16933542 fibronectin 1 isoform 3 preproprotein [Homo sapiens] 50 2e-06
gi|47132555 fibronectin 1 isoform 4 preproprotein [Homo sapiens] 50 2e-06
gi|47132553 fibronectin 1 isoform 5 preproprotein [Homo sapiens] 50 2e-06
gi|47132549 fibronectin 1 isoform 6 preproprotein [Homo sapiens] 50 2e-06
gi|153946395 tenascin C precursor [Homo sapiens] 50 2e-06
gi|54607027 integrin beta 4 isoform 2 precursor [Homo sapiens] 49 4e-06
gi|54607035 integrin beta 4 isoform 1 precursor [Homo sapiens] 48 6e-06
gi|54607033 integrin beta 4 isoform 3 precursor [Homo sapiens] 48 6e-06
gi|157384973 tenascin R [Homo sapiens] 44 1e-04
gi|142976733 surface glycoprotein, Ig superfamily member [Homo s... 44 1e-04
gi|62988324 tenascin N [Homo sapiens] 43 2e-04
gi|109633041 protein tyrosine phosphatase, receptor type, F isof... 43 3e-04
gi|109633039 protein tyrosine phosphatase, receptor type, F isof... 43 3e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens] 42 3e-04
gi|83281200 protogenin [Homo sapiens] 40 0.001
gi|18860892 protein tyrosine phosphatase, receptor type, D isofo... 40 0.001
gi|4885631 tyrosine kinase with immunoglobulin-like and EGF-like... 40 0.002
gi|4827022 contactin 2 precursor [Homo sapiens] 40 0.002
gi|104487297 protein tyrosine phosphatase, receptor type, sigma ... 40 0.002
>gi|40068487 von Willebrand factor A domain containing 1 isoform 2
[Homo sapiens]
Length = 233
Score = 476 bits (1224), Expect = e-135
Identities = 233/233 (100%), Positives = 233/233 (100%)
Query: 1 MRPQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAG 60
MRPQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAG
Sbjct: 1 MRPQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAG 60
Query: 61 LDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEE 120
LDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEE
Sbjct: 61 LDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEE 120
Query: 121 AGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQG 180
AGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQG
Sbjct: 121 AGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQG 180
Query: 181 LAPGTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPRPVPRAPTPGTASREP 233
LAPGTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPRPVPRAPTPGTASREP
Sbjct: 181 LAPGTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPRPVPRAPTPGTASREP 233
>gi|40068485 von Willebrand factor A domain containing 1 isoform 1
[Homo sapiens]
Length = 445
Score = 476 bits (1224), Expect = e-135
Identities = 233/233 (100%), Positives = 233/233 (100%)
Query: 1 MRPQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAG 60
MRPQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAG
Sbjct: 213 MRPQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAG 272
Query: 61 LDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEE 120
LDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEE
Sbjct: 273 LDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEE 332
Query: 121 AGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQG 180
AGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQG
Sbjct: 333 AGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQG 392
Query: 181 LAPGTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPRPVPRAPTPGTASREP 233
LAPGTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPRPVPRAPTPGTASREP
Sbjct: 393 LAPGTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPRPVPRAPTPGTASREP 445
>gi|112734845 collagen, type XX, alpha 1 [Homo sapiens]
Length = 1284
Score = 75.9 bits (185), Expect = 3e-14
Identities = 66/223 (29%), Positives = 91/223 (40%), Gaps = 41/223 (18%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELV--PSAQPGAARRQQLPGNATDWIWAG 60
P QL TE+ +LAW + A SG V ++ P + G A +PGN + G
Sbjct: 650 PSQLSMTELPGDAVQLAW--VAAAPSGVLVYQITWTPLGE-GKAHEISVPGNLGTAVLPG 706
Query: 61 LDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAP-E 119
L T+YDV ++ GA P L P+
Sbjct: 707 LGRHTEYDVTILAYYR--------------------------DGARSDPVSLRYTPSTVS 740
Query: 120 EAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRG-GEAQRVEVPAGRNCTTL 178
+ P + ++ P SL+VSW P LG L Y + + P G G + V VP R+ TL
Sbjct: 741 RSPPSNLALASETPDSLQVSWTPPLGRV--LHYWLTYAPASGLGPEKSVSVPGARSHVTL 798
Query: 179 QGLAPGTAYLVTVTAAFRSGRESALSA------KACTPDGPRP 215
L T Y V V+A + +GR A+SA A PDG P
Sbjct: 799 PDLQAATKYRVLVSAIYAAGRSEAVSATGQTACPALRPDGSLP 841
Score = 52.0 bits (123), Expect = 4e-07
Identities = 56/215 (26%), Positives = 82/215 (38%), Gaps = 34/215 (15%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P L +++TSS RL+W P Y ++ +++ G R + G A L
Sbjct: 380 PTSLVLSQVTSSSIRLSWTPAPRHPLKYLIVWR--ASRGGTPREVVVEGPAASTELHNLA 437
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
T+Y V++ P G G G G + A P
Sbjct: 438 SRTEYLVSVFP---------------IYEGGVGEGLRGLVTTAPLPP------------- 469
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRG-GEAQRVEVPAGRNCTTLQGL 181
P + ++ PR++ ++W P SA A Y V+ P GE + EV GR L GL
Sbjct: 470 PRALTLAAVTPRTVHLTWQP---SAGATHYLVRCSPASPKGEEEEREVQVGRPEVLLDGL 526
Query: 182 APGTAYLVTVTAAFRSGRESALSAKACTPDGPRPR 216
PG Y V+V + A +A TP PR
Sbjct: 527 EPGRDYEVSVQSLRGPEGSEARGIRARTPTLAPPR 561
Score = 51.6 bits (122), Expect = 6e-07
Identities = 61/293 (20%), Positives = 101/293 (34%), Gaps = 81/293 (27%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P+ L +T L W P +A + +Y++ P++ G +++ + + GL+
Sbjct: 470 PRALTLAAVTPRTVHLTWQP--SAGATHYLVRCSPASPKGEEEEREVQVGRPEVLLDGLE 527
Query: 63 PDTDYDVALV----PESN--------------------------------------VRLL 80
P DY+V++ PE + VRL+
Sbjct: 528 PGRDYEVSVQSLRGPEGSEARGIRARTPTLAPPRHLGFSDVSHDAARVFWEGAPRPVRLV 587
Query: 81 RPQILRVR-------TRPGEAGPGASGPESGA-------------GPAPTQLAALPAPEE 120
R + PG A GP S + G + T + +
Sbjct: 588 RVTYVSSEGGHSGQTEAPGNATSATLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKA 647
Query: 121 AGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQG 180
P ++ ++ +++++W A S L Y + + PL G+A + VP L G
Sbjct: 648 PSPSQLSMTELPGDAVQLAWVAAAPSGV-LVYQITWTPLGEGKAHEISVPGNLGTAVLPG 706
Query: 181 LAPGTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPRPVPRAPTPGTASREP 233
L T Y VT+ A +R G R PV TP T SR P
Sbjct: 707 LGRHTEYDVTILAYYRDG----------------ARSDPVSLRYTPSTVSRSP 743
Score = 50.1 bits (118), Expect = 2e-06
Identities = 43/128 (33%), Positives = 53/128 (41%), Gaps = 9/128 (7%)
Query: 101 PESGAGPAPTQLAALPAPEEAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLR 160
P G AP L LPAP +V+S S+R+SW PA L Y + + R
Sbjct: 364 PRQGPAAAPA-LDTLPAPTS-----LVLSQVTSSSIRLSWTPA--PRHPLKYLIVWRASR 415
Query: 161 GGEAQRVEVPAGRNCTTLQGLAPGTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPRPV 220
GG + V V T L LA T YLV+V + G L T P PR +
Sbjct: 416 GGTPREVVVEGPAASTELHNLASRTEYLVSVFPIYEGGVGEGLRGLVTTAPLPPPRALTL 475
Query: 221 PRAPTPGT 228
A TP T
Sbjct: 476 -AAVTPRT 482
Score = 34.3 bits (77), Expect = 0.094
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 136 LRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLAPGTAYLVTVTAAF 195
L++ W + GS LGY VQ P+ G Q V + T+ GL+P Y + +
Sbjct: 42 LQMKWRESEGSG--LGYLVQVKPMAGDSEQEVILTTKTPKATVGGLSPSKGYTLQIFELT 99
Query: 196 RSGR 199
SGR
Sbjct: 100 GSGR 103
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor
[Homo sapiens]
Length = 3063
Score = 68.6 bits (166), Expect = 4e-12
Identities = 58/209 (27%), Positives = 85/209 (40%), Gaps = 35/209 (16%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P+ L T+ T+ F++ W Y ++ + G +R P N L
Sbjct: 726 PRNLKVTDETTDSFKITWTQAPGRVLRYRIIYRPVAG--GESREVTTPPNQRRRTLENLI 783
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEE-- 120
PDT Y+V+++PE +GPG T L A EE
Sbjct: 784 PDTKYEVSVIPEY-----------------FSGPG------------TPLTGNAATEEVR 814
Query: 121 AGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQG 180
P + +S ++++SW+ A G Y V + P+ GGE Q V V T LQG
Sbjct: 815 GNPRDLRVSDPTTSTMKLSWSGAPGKVKQ--YLVTYTPVAGGETQEVTVRGDTTNTVLQG 872
Query: 181 LAPGTAYLVTVTAAFRSGRESALSAKACT 209
L GT Y ++VTA + SG AL + T
Sbjct: 873 LKEGTQYALSVTALYASGAGDALFGEGTT 901
Score = 58.5 bits (140), Expect = 5e-09
Identities = 51/210 (24%), Positives = 83/210 (39%), Gaps = 29/210 (13%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQ--LPGNATDWIWAG 60
P L TE+TS GFR W +D Y + P G++ + + L G+ ++
Sbjct: 1658 PTNLKITEVTSEGFRGTWDHG-ASDVSLYRITWAPF---GSSDKMETILNGDENTLVFEN 1713
Query: 61 LDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEE 120
L+P+T Y+V++ P S + G T +
Sbjct: 1714 LNPNTIYEVSITA--------------------IYPDESESDDLIGSERTLPILTTQAPK 1753
Query: 121 AGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRG-GEAQRVEVPAGRNCTTLQ 179
+GP + + +A SL V W PA G Y + + P G G Q + +N LQ
Sbjct: 1754 SGPRNLQVYNATSNSLTVKWDPASGRVQK--YRITYQPSTGEGNEQTTTIGGRQNSVVLQ 1811
Query: 180 GLAPGTAYLVTVTAAFRSGRESALSAKACT 209
L P T Y +TV++ + G ++ + T
Sbjct: 1812 KLKPDTPYTITVSSLYPDGEGGRMTGRGKT 1841
Score = 57.4 bits (137), Expect = 1e-08
Identities = 55/228 (24%), Positives = 91/228 (39%), Gaps = 33/228 (14%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P+ L +E+TS GF+ W P Y++ + + P ++T + + L
Sbjct: 635 PKDLSFSEVTSYGFKTNWSPAGENVFSYHITYKEAAGDDEVTVVE--PASSTSVVLSSLK 692
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
P+T Y V + E P AG + GA
Sbjct: 693 PETLYLVNVTAEYEDGFSIPL----------AGEETTEEVKGA----------------- 725
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLA 182
P + ++ S +++W A G L Y + + P+ GGE++ V P + TL+ L
Sbjct: 726 PRNLKVTDETTDSFKITWTQAPGRV--LRYRIIYRPVAGGESREVTTPPNQRRRTLENLI 783
Query: 183 PGTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPRPVPRAPTPGTAS 230
P T Y V+V + SG + L+ A T + R PR + R P T++
Sbjct: 784 PDTKYEVSVIPEYFSGPGTPLTGNAATEE-VRGNPRDL-RVSDPTTST 829
Score = 47.8 bits (112), Expect = 8e-06
Identities = 53/189 (28%), Positives = 72/189 (38%), Gaps = 34/189 (17%)
Query: 31 YVLELVPSAQPGAARRQQLPGNATDWIWAGLDPDTDYDVALVPESNVRLLRPQILRVRTR 90
Y L P+A G +PGN I L PDT Y V +VP V T
Sbjct: 1874 YKLFYAPAAG-GPEELVPIPGNTNYAILRNLQPDTSYTVTVVP-------------VYTE 1919
Query: 91 PGEAGPGASGPESGAGPAPTQLAALPAPEEAGPERIVISHARPRSLRVSWAPALGSAAAL 150
G G ++G T + L + + + P SL V W PA G L
Sbjct: 1920 ----GDGGRTSDTGR----TLMRGLA-------RNVQVYNPTPNSLDVRWDPAPGPV--L 1962
Query: 151 GYHVQFGPLRGGE-AQRVEVPAGRNCTTLQGLAPGTAYLVTVTAAFRSGRESALSAKACT 209
Y V + P+ G ++ + VP L+ L P T Y V + A + G + A+ T
Sbjct: 1963 QYRVVYSPVDGTRPSESIVVPGNTRMVHLERLIPDTLYSVNLVALYSDGEGNPSPAQGRT 2022
Query: 210 PDGPRPRPR 218
PR PR
Sbjct: 2023 L--PRSGPR 2029
Score = 46.6 bits (109), Expect = 2e-05
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLA 182
P +VIS RS RVSW P S Y V++ P+ GG+ Q V T L+ L
Sbjct: 1388 PSNLVISERTHRSFRVSWTPPSDSVDR--YKVEYYPVSGGKRQEFYVSRMETSTVLKDLK 1445
Query: 183 PGTAYLVTV 191
P T Y+V V
Sbjct: 1446 PETEYVVNV 1454
Score = 45.8 bits (107), Expect = 3e-05
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Query: 111 QLAALPAPEEAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVP 170
+LAA+ P+ + S + +W+PA YH+ + G + V P
Sbjct: 623 ELAAIKKKAYVPPKDLSFSEVTSYGFKTNWSPA--GENVFSYHITYKEAAGDDEVTVVEP 680
Query: 171 AGRNCTTLQGLAPGTAYLVTVTAAFRSGRESALSAKACTPD 211
A L L P T YLV VTA + G L+ + T +
Sbjct: 681 ASSTSVVLSSLKPETLYLVNVTAEYEDGFSIPLAGEETTEE 721
Score = 45.4 bits (106), Expect = 4e-05
Identities = 53/227 (23%), Positives = 79/227 (34%), Gaps = 37/227 (16%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVL-ELVPSAQPGAARRQQLPGNATDWIWAGL 61
PQ +H ++ + FR++W P + GY ++ + V S +P A G T + L
Sbjct: 2119 PQNIHISDEWYTRFRVSWDPSPSPVLGYKIVYKPVGSNEPMEA----FVGEMTSYTLHNL 2174
Query: 62 DPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEA 121
+P T YDV + + + G S P + G +
Sbjct: 2175 NPSTTYDVNVYAQYD-------------------SGLSVPLTDQGTTLYLNVTDLKTYQI 2215
Query: 122 GPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGL 181
G + V W+P AA Y ++ P G Q + V GL
Sbjct: 2216 GWDTFC----------VKWSP---HRAATSYRLKLSPADGTRGQEITVRGSETSHCFTGL 2262
Query: 182 APGTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPRPVPRAPTPGT 228
+P T Y VTV + +S K T P P P P P T
Sbjct: 2263 SPDTDYGVTVFVQTPNLEGPGVSVKEHTTVKPTEAPTEPPTPPPPPT 2309
Score = 43.1 bits (100), Expect = 2e-04
Identities = 44/196 (22%), Positives = 65/196 (33%), Gaps = 31/196 (15%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P+ L TS+ + W P + Y + PS G + + G + L
Sbjct: 1756 PRNLQVYNATSNSLTVKWDPA-SGRVQKYRITYQPSTGEGNEQTTTIGGRQNSVVLQKLK 1814
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
PDT Y + V L P G G +G G
Sbjct: 1815 PDTPYTIT------VSSLYPD-------------GEGGRMTGRGKTKPLNTV-------- 1847
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLA 182
+ + +L V W A G+ Y + + P GG + V +P N L+ L
Sbjct: 1848 -RNLRVYDPSTSTLNVRWDHAEGNPRQ--YKLFYAPAAGGPEELVPIPGNTNYAILRNLQ 1904
Query: 183 PGTAYLVTVTAAFRSG 198
P T+Y VTV + G
Sbjct: 1905 PDTSYTVTVVPVYTEG 1920
Score = 42.7 bits (99), Expect = 3e-04
Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 107 PAPTQLAALPAPEEAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQR 166
P+P Q LP +GP + + SL V+W A G Y + + P G
Sbjct: 2015 PSPAQGRTLP---RSGPRNLRVFGETTNSLSVAWDHADGPVQQ--YRIIYSPTVGDPIDE 2069
Query: 167 -VEVPAGRNCTTLQGLAPGTAYLVTVTAAFRSGRESALSAKACT 209
VP RN LQ L P T Y +TV A + G L+ T
Sbjct: 2070 YTTVPGRRNNVILQPLQPDTPYKITVIAVYEDGDGGHLTGNGRT 2113
Score = 41.2 bits (95), Expect = 8e-04
Identities = 46/198 (23%), Positives = 73/198 (36%), Gaps = 35/198 (17%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVL--ELVPSAQPGAARRQQLPGNATDWIWAG 60
PQ L +IT + W GY V L G + LP +A +
Sbjct: 908 PQDLVTKDITDTSIGAYWTSAPGMVRGYRVSWKSLYDDVDTG---EKNLPEDAIHTMIEN 964
Query: 61 LDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEE 120
L P+T Y +++ + +G G E G A T+L+
Sbjct: 965 LQPETKYRISVFATYS-----------------SGEG----EPLTGDATTELSQ------ 997
Query: 121 AGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQG 180
+ + + ++RV+W PA G + Y V + P G+ +VP T L+
Sbjct: 998 -DSKTLKVDEETENTMRVTWKPAPGKV--VNYRVVYRPHGRGKQMVAKVPPTVTSTVLKR 1054
Query: 181 LAPGTAYLVTVTAAFRSG 198
L P T Y +TV ++ G
Sbjct: 1055 LQPQTTYDITVLPIYKMG 1072
Score = 40.0 bits (92), Expect = 0.002
Identities = 54/218 (24%), Positives = 78/218 (35%), Gaps = 39/218 (17%)
Query: 3 PQQLHATEITSSGFRLAW-PPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGL 61
P L +E T FR++W PP + D Y +E P G + + T + L
Sbjct: 1388 PSNLVISERTHRSFRVSWTPPSDSVDR--YKVEYYP-VSGGKRQEFYVSRMETSTVLKDL 1444
Query: 62 DPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEA 121
P+T+Y V + P G E LP P +
Sbjct: 1445 KPETEYVVNVYSVVEDEYSEP---------------LKGTEK----------TLPVPVVS 1479
Query: 122 GPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRV-EVPAGRNCTTLQ- 179
+ I P ++ V W P G A GY + + P++ E R EV G +Q
Sbjct: 1480 ----LNIYDVGPTTMHVQWQPVGG---ATGYILSYKPVKDTEPTRPKEVRLGPTVNDMQL 1532
Query: 180 -GLAPGTAYLVTVTAAFRSGRESALSAKACTPDGPRPR 216
L P T Y VTV A ++ + T PRP+
Sbjct: 1533 TDLVPNTEYAVTVQAVLHDLTSEPVTVREVTLPLPRPQ 1570
Score = 35.4 bits (80), Expect = 0.042
Identities = 36/122 (29%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 16 FRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLP--GNATDWIWAGLDPDTDYDVALVP 73
F + W P A S Y L+L P+ R Q++ G+ T + GL PDTDY V +
Sbjct: 2220 FCVKWSPHRAATS--YRLKLSPA---DGTRGQEITVRGSETSHCFTGLSPDTDYGVTVFV 2274
Query: 74 ESNVRLLRPQILRVRTRPGEAGPGASGPESGA---GPAPTQLAALPAPEEAGPERIVISH 130
++ P GPG S E APT+ P P P R V
Sbjct: 2275 QT---------------PNLEGPGVSVKEHTTVKPTEAPTEPPTPPPPPTIPPARDVCKG 2319
Query: 131 AR 132
A+
Sbjct: 2320 AK 2321
Score = 34.3 bits (77), Expect = 0.094
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 15/119 (12%)
Query: 107 PAPTQLAALPAPEEAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQR 166
P + LP P P+ + + ++ V W P G Y V++ + +
Sbjct: 1556 PVTVREVTLPLPR---PQDLKLRDVTHSTMNVFWEPVPGKVRK--YIVRYKTPEE-DVKE 1609
Query: 167 VEVPAGRNCTTLQGLAPGTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPRPVPRAPT 225
VEV T+L+ L T Y V+V+A G ++A+ T RPVP APT
Sbjct: 1610 VEVDRSETSTSLKDLFSQTLYTVSVSAVHDEGESPPVTAQETT--------RPVP-APT 1659
Score = 33.1 bits (74), Expect = 0.21
Identities = 39/200 (19%), Positives = 63/200 (31%), Gaps = 33/200 (16%)
Query: 2 RPQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGL 61
RPQ L ++T S + W P+ Y V P + ++ + T L
Sbjct: 1568 RPQDLKLRDVTHSTMNVFWEPVPGKVRKYIVRYKTPEED---VKEVEVDRSETSTSLKDL 1624
Query: 62 DPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEA 121
T Y V++ A E + P Q P P
Sbjct: 1625 FSQTLYTVSV-------------------------SAVHDEGESPPVTAQETTRPVP--- 1656
Query: 122 GPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGL 181
P + I+ R +W G++ Y + + P + + N + L
Sbjct: 1657 APTNLKITEVTSEGFRGTWDH--GASDVSLYRITWAPFGSSDKMETILNGDENTLVFENL 1714
Query: 182 APGTAYLVTVTAAFRSGRES 201
P T Y V++TA + ES
Sbjct: 1715 NPNTIYEVSITAIYPDESES 1734
Score = 32.0 bits (71), Expect = 0.47
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 135 SLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLAPGTAYLVTVTA 193
++ +SWA + +GY + P G + + A T L L P T Y+VT+T+
Sbjct: 40 TVHMSWAKPVDPI--VGYRITVDPTTDGPTKEFTLSASTTETLLSELVPETEYVVTITS 96
Score = 30.4 bits (67), Expect = 1.4
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P L A E++S +L W P + +GY V+ L P + T L
Sbjct: 337 PSNLIAMEVSSKYVKLNWNPSPSPVTGYKVI-LTPMTAGSRQHALSVGPQTTTLSVRDLS 395
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRP 91
DT+Y +++ + P + +T+P
Sbjct: 396 ADTEYQISVSAMKGMTSSEPISIMEKTQP 424
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 62.0 bits (149), Expect = 4e-10
Identities = 67/227 (29%), Positives = 89/227 (39%), Gaps = 36/227 (15%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYV--LELVPSAQPGAARRQQL--PGNATDWIW 58
P+ L +E +S R+ W +GY V L QP + RQ++ P T
Sbjct: 235 PRDLVLSEPSSQSLRVQWTAASGPVTGYKVQYTPLTGLGQPLPSERQEVNVPAGETSVRL 294
Query: 59 AGLDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAP 118
GL P T+Y V ++ L I GEA G + + AL P
Sbjct: 295 RGLRPLTEYQVTVIA-----LYANSI-------GEAVSGTA-----------RTTALEGP 331
Query: 119 EEAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTL 178
E + I + SL V+W G A GY V + L GG Q+ E+ G+ L
Sbjct: 332 E------LTIQNTTAHSLLVAWRSVPG---ATGYRVTWRVLSGGPTQQQELGPGQGSVLL 382
Query: 179 QGLAPGTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPRPVPRAPT 225
+ L PGT Y VTV+ F A S A T RPV PT
Sbjct: 383 RDLEPGTDYEVTVSTLFGRSVGPATSLMARTDASVEQTLRPVILGPT 429
Score = 61.2 bits (147), Expect = 7e-10
Identities = 41/106 (38%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 116 PAPEEAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRG------GEAQRVEV 169
P + P +V+S +SLRV W A G GY VQ+ PL G E Q V V
Sbjct: 228 PDDSTSAPRDLVLSEPSSQSLRVQWTAASGPVT--GYKVQYTPLTGLGQPLPSERQEVNV 285
Query: 170 PAGRNCTTLQGLAPGTAYLVTVTAAFRSGRESALSAKACTP--DGP 213
PAG L+GL P T Y VTV A + + A+S A T +GP
Sbjct: 286 PAGETSVRLRGLRPLTEYQVTVIALYANSIGEAVSGTARTTALEGP 331
Score = 56.2 bits (134), Expect = 2e-08
Identities = 56/211 (26%), Positives = 83/211 (39%), Gaps = 35/211 (16%)
Query: 6 LHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLDPDT 65
+H T+ +SS + W + A +GY V + G + Q + G AT GL+PDT
Sbjct: 692 VHVTQASSSSVTITWTRVPGA-TGYRVSW---HSAHGPEKSQLVSGEATVAELDGLEPDT 747
Query: 66 DYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAGP-E 124
+Y V VR G GP P + APE G
Sbjct: 748 EYTV----------------HVRAHVA----GVDGP-------PASVVVRTAPEPVGRVS 780
Query: 125 RIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLAPG 184
R+ I +A LR++W G+ A Y + +G GG + +P + ++GL G
Sbjct: 781 RLQILNASSDVLRITWVGVTGATA---YRLAWGRSEGGPMRHQILPGNTDSAEIRGLEGG 837
Query: 185 TAYLVTVTAAFRSGRESALSAKACTPDGPRP 215
+Y V VTA + +S TP P
Sbjct: 838 VSYSVRVTALVGDREGTPVSIVVTTPPEAPP 868
Score = 47.0 bits (110), Expect = 1e-05
Identities = 49/200 (24%), Positives = 77/200 (38%), Gaps = 36/200 (18%)
Query: 6 LHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLDPDT 65
L ATE+ R++W P+ G ++ + G R LPG+ T + +
Sbjct: 514 LQATELPGQRVRVSWSPV----PGATQYRIIVRSTQGVERTLVLPGSQTAFDLDDVQAGL 569
Query: 66 DYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAGPER 125
Y V + R +L VR P P + L R
Sbjct: 570 SYTVRVSARVGPREGSASVLTVRREP---------------ETPLAVPGL---------R 605
Query: 126 IVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLAPGT 185
+V+S A +RV+W P G++ G+ + + G E+ + +P T + GL PGT
Sbjct: 606 VVVSDAT--RVRVAWGPVPGAS---GFRISWSTGSGPESSQT-LPPDSTATDITGLQPGT 659
Query: 186 AYLVTVTAAFRSGRESALSA 205
Y V V+ GRE +A
Sbjct: 660 TYQVAVSVL--RGREEGPAA 677
Score = 38.9 bits (89), Expect = 0.004
Identities = 57/217 (26%), Positives = 84/217 (38%), Gaps = 38/217 (17%)
Query: 5 QLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLDPD 64
+L T+ +AW + A +GY V V S P ++Q+L + L+P
Sbjct: 332 ELTIQNTTAHSLLVAWRSVPGA-TGYRVTWRVLSGGP--TQQQELGPGQGSVLLRDLEPG 388
Query: 65 TDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAGPE 124
TDY+V V T G + GPA + +A A E
Sbjct: 389 TDYEVT----------------VSTLFGRS----------VGPATSLMARTDASVEQTLR 422
Query: 125 RIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEA-QRVEVPAGRNCTTLQGLAP 183
+++ P S+ +SW A GY +++ G E Q+V +P+ L GL P
Sbjct: 423 PVILG---PTSILLSWNLV---PEARGYRLEWRRETGLEPPQKVVLPSDVTRYQLDGLQP 476
Query: 184 GTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPRPV 220
GT Y +T+ G E A A P GP PV
Sbjct: 477 GTEYRLTLYTLL-EGHEVATPA-TVVPTGPELPVSPV 511
Score = 32.7 bits (73), Expect = 0.27
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 5 QLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGA---ARRQQLPGNATDWIWAGL 61
+L + + LAW P+ A S Y+L P PG Q LPG ++ GL
Sbjct: 961 ELRVVDTSIDSVTLAWTPVSRASS--YILSWRPLRGPGQEVPGSPQTLPGISSSQRVTGL 1018
Query: 62 DPDTDYDVALVP 73
+P Y +L P
Sbjct: 1019 EPGVSYIFSLTP 1030
Score = 32.3 bits (72), Expect = 0.36
Identities = 45/171 (26%), Positives = 63/171 (36%), Gaps = 32/171 (18%)
Query: 49 LPGNATDWIWAGLDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPA 108
LP + T + GL P T+Y RL +L A +GPE P
Sbjct: 462 LPSDVTRYQLDGLQPGTEY----------RLTLYTLLEGHEVATPATVVPTGPELPVSPV 511
Query: 109 PTQLAALPAPEEAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVE 168
T L A P + +RVSW+P G A Y + +G E V
Sbjct: 512 -TDLQATELPGQ--------------RVRVSWSPVPG---ATQYRIIVRSTQGVERTLV- 552
Query: 169 VPAGRNCTTLQGLAPGTAYLVTVTAAF--RSGRESALSAKACTPDGPRPRP 217
+P + L + G +Y V V+A R G S L+ + P+ P P
Sbjct: 553 LPGSQTAFDLDDVQAGLSYTVRVSARVGPREGSASVLTVRR-EPETPLAVP 602
Score = 28.9 bits (63), Expect = 3.9
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 88 RTRPGEAG-PGASGPESGAGPAPTQLAALPAPEEAGPERIVISHARPRSLRVSWAPALGS 146
R PG AG PGA GPE GP Q P + + A P+ + PA G
Sbjct: 1506 RGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPA-GP 1564
Query: 147 AAALGYHVQFGP 158
A G + GP
Sbjct: 1565 RGATGVQGERGP 1576
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor
[Homo sapiens]
Length = 1899
Score = 58.5 bits (140), Expect = 5e-09
Identities = 51/210 (24%), Positives = 83/210 (39%), Gaps = 29/210 (13%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQ--LPGNATDWIWAG 60
P L TE+TS GFR W +D Y + P G++ + + L G+ ++
Sbjct: 494 PTNLKITEVTSEGFRGTWDHG-ASDVSLYRITWAPF---GSSDKMETILNGDENTLVFEN 549
Query: 61 LDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEE 120
L+P+T Y+V++ P S + G T +
Sbjct: 550 LNPNTIYEVSITA--------------------IYPDESESDDLIGSERTLPILTTQAPK 589
Query: 121 AGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRG-GEAQRVEVPAGRNCTTLQ 179
+GP + + +A SL V W PA G Y + + P G G Q + +N LQ
Sbjct: 590 SGPRNLQVYNATSNSLTVKWDPASGRVQK--YRITYQPSTGEGNEQTTTIGGRQNSVVLQ 647
Query: 180 GLAPGTAYLVTVTAAFRSGRESALSAKACT 209
L P T Y +TV++ + G ++ + T
Sbjct: 648 KLKPDTPYTITVSSLYPDGEGGRMTGRGKT 677
Score = 47.8 bits (112), Expect = 8e-06
Identities = 53/189 (28%), Positives = 72/189 (38%), Gaps = 34/189 (17%)
Query: 31 YVLELVPSAQPGAARRQQLPGNATDWIWAGLDPDTDYDVALVPESNVRLLRPQILRVRTR 90
Y L P+A G +PGN I L PDT Y V +VP V T
Sbjct: 710 YKLFYAPAAG-GPEELVPIPGNTNYAILRNLQPDTSYTVTVVP-------------VYTE 755
Query: 91 PGEAGPGASGPESGAGPAPTQLAALPAPEEAGPERIVISHARPRSLRVSWAPALGSAAAL 150
G G ++G T + L + + + P SL V W PA G L
Sbjct: 756 ----GDGGRTSDTGR----TLMRGLA-------RNVQVYNPTPNSLDVRWDPAPGPV--L 798
Query: 151 GYHVQFGPLRGGE-AQRVEVPAGRNCTTLQGLAPGTAYLVTVTAAFRSGRESALSAKACT 209
Y V + P+ G ++ + VP L+ L P T Y V + A + G + A+ T
Sbjct: 799 QYRVVYSPVDGTRPSESIVVPGNTRMVHLERLIPDTLYSVNLVALYSDGEGNPSPAQGRT 858
Query: 210 PDGPRPRPR 218
PR PR
Sbjct: 859 L--PRSGPR 865
Score = 46.6 bits (109), Expect = 2e-05
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLA 182
P +VIS RS RVSW P S Y V++ P+ GG+ Q V T L+ L
Sbjct: 224 PSNLVISERTHRSFRVSWTPPSDSVDR--YKVEYYPVSGGKRQEFYVSRMETSTVLKDLK 281
Query: 183 PGTAYLVTV 191
P T Y+V V
Sbjct: 282 PETEYVVNV 290
Score = 45.4 bits (106), Expect = 4e-05
Identities = 53/227 (23%), Positives = 79/227 (34%), Gaps = 37/227 (16%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVL-ELVPSAQPGAARRQQLPGNATDWIWAGL 61
PQ +H ++ + FR++W P + GY ++ + V S +P A G T + L
Sbjct: 955 PQNIHISDEWYTRFRVSWDPSPSPVLGYKIVYKPVGSNEPMEA----FVGEMTSYTLHNL 1010
Query: 62 DPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEA 121
+P T YDV + + + G S P + G +
Sbjct: 1011 NPSTTYDVNVYAQYD-------------------SGLSVPLTDQGTTLYLNVTDLKTYQI 1051
Query: 122 GPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGL 181
G + V W+P AA Y ++ P G Q + V GL
Sbjct: 1052 GWDTFC----------VKWSP---HRAATSYRLKLSPADGTRGQEITVRGSETSHCFTGL 1098
Query: 182 APGTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPRPVPRAPTPGT 228
+P T Y VTV + +S K T P P P P P T
Sbjct: 1099 SPDTDYGVTVFVQTPNLEGPGVSVKEHTTVKPTEAPTEPPTPPPPPT 1145
Score = 43.1 bits (100), Expect = 2e-04
Identities = 44/196 (22%), Positives = 65/196 (33%), Gaps = 31/196 (15%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P+ L TS+ + W P + Y + PS G + + G + L
Sbjct: 592 PRNLQVYNATSNSLTVKWDPA-SGRVQKYRITYQPSTGEGNEQTTTIGGRQNSVVLQKLK 650
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
PDT Y + V L P G G +G G
Sbjct: 651 PDTPYTIT------VSSLYPD-------------GEGGRMTGRGKTKPLNTV-------- 683
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLA 182
+ + +L V W A G+ Y + + P GG + V +P N L+ L
Sbjct: 684 -RNLRVYDPSTSTLNVRWDHAEGNPRQ--YKLFYAPAAGGPEELVPIPGNTNYAILRNLQ 740
Query: 183 PGTAYLVTVTAAFRSG 198
P T+Y VTV + G
Sbjct: 741 PDTSYTVTVVPVYTEG 756
Score = 42.7 bits (99), Expect = 3e-04
Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 107 PAPTQLAALPAPEEAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQR 166
P+P Q LP +GP + + SL V+W A G Y + + P G
Sbjct: 851 PSPAQGRTLP---RSGPRNLRVFGETTNSLSVAWDHADGPVQQ--YRIIYSPTVGDPIDE 905
Query: 167 -VEVPAGRNCTTLQGLAPGTAYLVTVTAAFRSGRESALSAKACT 209
VP RN LQ L P T Y +TV A + G L+ T
Sbjct: 906 YTTVPGRRNNVILQPLQPDTPYKITVIAVYEDGDGGHLTGNGRT 949
Score = 40.0 bits (92), Expect = 0.002
Identities = 54/218 (24%), Positives = 78/218 (35%), Gaps = 39/218 (17%)
Query: 3 PQQLHATEITSSGFRLAW-PPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGL 61
P L +E T FR++W PP + D Y +E P G + + T + L
Sbjct: 224 PSNLVISERTHRSFRVSWTPPSDSVDR--YKVEYYP-VSGGKRQEFYVSRMETSTVLKDL 280
Query: 62 DPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEA 121
P+T+Y V + P G E LP P +
Sbjct: 281 KPETEYVVNVYSVVEDEYSEP---------------LKGTEK----------TLPVPVVS 315
Query: 122 GPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRV-EVPAGRNCTTLQ- 179
+ I P ++ V W P G A GY + + P++ E R EV G +Q
Sbjct: 316 ----LNIYDVGPTTMHVQWQPVGG---ATGYILSYKPVKDTEPTRPKEVRLGPTVNDMQL 368
Query: 180 -GLAPGTAYLVTVTAAFRSGRESALSAKACTPDGPRPR 216
L P T Y VTV A ++ + T PRP+
Sbjct: 369 TDLVPNTEYAVTVQAVLHDLTSEPVTVREVTLPLPRPQ 406
Score = 35.4 bits (80), Expect = 0.042
Identities = 36/122 (29%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 16 FRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLP--GNATDWIWAGLDPDTDYDVALVP 73
F + W P A S Y L+L P+ R Q++ G+ T + GL PDTDY V +
Sbjct: 1056 FCVKWSPHRAATS--YRLKLSPA---DGTRGQEITVRGSETSHCFTGLSPDTDYGVTVFV 1110
Query: 74 ESNVRLLRPQILRVRTRPGEAGPGASGPESGA---GPAPTQLAALPAPEEAGPERIVISH 130
++ P GPG S E APT+ P P P R V
Sbjct: 1111 QT---------------PNLEGPGVSVKEHTTVKPTEAPTEPPTPPPPPTIPPARDVCKG 1155
Query: 131 AR 132
A+
Sbjct: 1156 AK 1157
Score = 34.3 bits (77), Expect = 0.094
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 15/119 (12%)
Query: 107 PAPTQLAALPAPEEAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQR 166
P + LP P P+ + + ++ V W P G Y V++ + +
Sbjct: 392 PVTVREVTLPLPR---PQDLKLRDVTHSTMNVFWEPVPGKVRK--YIVRYKTPEE-DVKE 445
Query: 167 VEVPAGRNCTTLQGLAPGTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPRPVPRAPT 225
VEV T+L+ L T Y V+V+A G ++A+ T RPVP APT
Sbjct: 446 VEVDRSETSTSLKDLFSQTLYTVSVSAVHDEGESPPVTAQETT--------RPVP-APT 495
Score = 33.1 bits (74), Expect = 0.21
Identities = 39/200 (19%), Positives = 63/200 (31%), Gaps = 33/200 (16%)
Query: 2 RPQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGL 61
RPQ L ++T S + W P+ Y V P + ++ + T L
Sbjct: 404 RPQDLKLRDVTHSTMNVFWEPVPGKVRKYIVRYKTPEED---VKEVEVDRSETSTSLKDL 460
Query: 62 DPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEA 121
T Y V++ A E + P Q P P
Sbjct: 461 FSQTLYTVSV-------------------------SAVHDEGESPPVTAQETTRPVP--- 492
Query: 122 GPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGL 181
P + I+ R +W G++ Y + + P + + N + L
Sbjct: 493 APTNLKITEVTSEGFRGTWDH--GASDVSLYRITWAPFGSSDKMETILNGDENTLVFENL 550
Query: 182 APGTAYLVTVTAAFRSGRES 201
P T Y V++TA + ES
Sbjct: 551 NPNTIYEVSITAIYPDESES 570
>gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens]
Length = 1796
Score = 56.6 bits (135), Expect = 2e-08
Identities = 56/219 (25%), Positives = 89/219 (40%), Gaps = 21/219 (9%)
Query: 4 QQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLDP 63
Q L E+T+ FR+ W P L+AD G + L +P G L + GL+P
Sbjct: 628 QYLEIDEVTTDSFRVTWHP-LSADEGLHKLMWIP-VYGGKTEEVVLKEEQDSHVIEGLEP 685
Query: 64 DTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPT--QLAALPAPEEA 121
T+Y+V+L+ + + V G + PA T ++ + +
Sbjct: 686 GTEYEVSLLAVLDDGSESEVVTAV---------GTTLDSFWTEPATTIVPTTSVTSVFQT 736
Query: 122 GPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQR----VEVPAGRNCTT 177
G +V+ SLRV W + + + V + +G + V VP +N
Sbjct: 737 GIRNLVVGDETTSSLRVKW--DISDSDVQQFRVTYMTAQGDPEEEVIGTVMVPGSQNNLL 794
Query: 178 LQGLAPGTAYLVTVTAAFRSGRESALSA--KACTPDGPR 214
L+ L P T Y VTVT + G ++SA K GP+
Sbjct: 795 LKPLLPDTEYKVTVTPIYTDGEGVSVSAPGKTLPSSGPQ 833
Score = 47.4 bits (111), Expect = 1e-05
Identities = 53/207 (25%), Positives = 82/207 (39%), Gaps = 37/207 (17%)
Query: 10 EITSSGFRLAWPPLLTADSGYYVLEL-VPSAQPGAARRQQLPGNATDWIWAGLDPDTDYD 68
++T + R+ W + A SGY +L + G + ++ TD +GL P+T+Y
Sbjct: 453 DVTENSMRVKWDAVPGA-SGYLILYAPLTEGLAGDEKEMKIGETHTDIELSGLLPNTEYT 511
Query: 69 VALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAGPERIVI 128
V + G AS P +G T LA P P + I
Sbjct: 512 VTVY-------------------AMFGEEASDPVTG---QETTLALSP------PRNLRI 543
Query: 129 SHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTT--LQGLAPGTA 186
S+ S R++W P S GY + + G E VEV TT L+GL P T
Sbjct: 544 SNVGSNSARLTWDPT--SRQINGYRIVYNNADGTEINEVEVDP---ITTFPLKGLTPLTE 598
Query: 187 YLVTVTAAFRSGRESALSAKACTPDGP 213
Y + + + + G+ L+ T + P
Sbjct: 599 YTIAIFSIYDEGQSEPLTGVFTTEEVP 625
Score = 46.2 bits (108), Expect = 2e-05
Identities = 47/200 (23%), Positives = 77/200 (38%), Gaps = 35/200 (17%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P+ L + + S+ RL W P +GY +V + G + T + GL
Sbjct: 538 PRNLRISNVGSNSARLTWDPTSRQINGY---RIVYNNADGTEINEVEVDPITTFPLKGLT 594
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
P T+Y +A+ + G S P +G E
Sbjct: 595 PLTEYTIAIFSIYD-------------------EGQSEPLTGV---------FTTEEVPA 626
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYH-VQFGPLRGGEAQRVEVPAGRNCTTLQGL 181
+ + I S RV+W P +A G H + + P+ GG+ + V + ++ ++GL
Sbjct: 627 QQYLEIDEVTTDSFRVTWHPL---SADEGLHKLMWIPVYGGKTEEVVLKEEQDSHVIEGL 683
Query: 182 APGTAYLVTVTAAFRSGRES 201
PGT Y V++ A G ES
Sbjct: 684 EPGTEYEVSLLAVLDDGSES 703
Score = 38.1 bits (87), Expect = 0.007
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLA 182
P ++ S RS V+W A G+ Y V + P RGG+ V V + T L+ L
Sbjct: 356 PTELITSEVTARSFMVNWTHAPGNVEK--YRVVYYPTRGGKPDEVVVDGTVSSTVLKNLM 413
Query: 183 PGTAYLVTVTAAF 195
T Y + V A +
Sbjct: 414 SLTEYQIAVFAIY 426
Score = 37.0 bits (84), Expect = 0.014
Identities = 39/162 (24%), Positives = 60/162 (37%), Gaps = 31/162 (19%)
Query: 49 LPGNATDWIWAGLDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPA 108
+PG+ + + L PDT+Y V + P I + PG + P S
Sbjct: 786 VPGSQNNLLLKPLLPDTEYKVTVTP----------IYTDGEGVSVSAPGKTLPSS----- 830
Query: 109 PTQLAALPAPEEAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLR-GGEAQRV 167
GP+ + +S LR++W P S+ GY + + P+ G
Sbjct: 831 -------------GPQNLRVSEEWYNRLRITWDPP--SSPVKGYRIVYKPVSVPGPTLET 875
Query: 168 EVPAGRNCTTLQGLAPGTAYLVTVTAAFRSGRESALSAKACT 209
V A N + L G Y V + A+ SG AL+ T
Sbjct: 876 FVGADINTILITNLLSGMDYNVKIFASQASGFSDALTGMVKT 917
Score = 32.3 bits (72), Expect = 0.36
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 13/110 (11%)
Query: 121 AGPERI---VISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTT 177
A P R+ VISH S+++SW G GY + P GG+ ++ +
Sbjct: 31 APPTRLRYNVISHD---SIQISWKAPRGKFG--GYKLLVTPTSGGKTNQLNLQNTATKAI 85
Query: 178 LQGLAPGTAYLVTVTAAFRSGRESALSAKACTPD-----GPRPRPRPVPR 222
+QGL P Y V + A + + D P+PR + V R
Sbjct: 86 IQGLMPDQNYTVQIIAYNKDKESKPAQGQFRIKDLEKRKDPKPRVKVVDR 135
>gi|20665034 tenascin XB isoform 2 [Homo sapiens]
Length = 673
Score = 53.5 bits (127), Expect = 1e-07
Identities = 60/220 (27%), Positives = 82/220 (37%), Gaps = 36/220 (16%)
Query: 2 RPQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSA-------QPGAARRQQLPGNAT 54
R QL T++T+S RL W A + + VPS +P R +PG
Sbjct: 86 RLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRH 145
Query: 55 DWIWAGLDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAA 114
+ L T Y + L G GP + +S G A T
Sbjct: 146 SAVLRDLRSGTLYSLTLY-------------------GLRGPHKA--DSIQGTARTLSPV 184
Query: 115 LPAPEEAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRN 174
L +P + + S R S +V+W P A + + V + GGE Q V+V
Sbjct: 185 LESPRD-----LQFSEIRETSAKVNWMPPPSRADS--FKVSYQLADGGEPQSVQVDGQAR 237
Query: 175 CTTLQGLAPGTAYLVTVTAAFRSGRESALSAKACT-PDGP 213
LQGL PG Y VTV + L+ T PDGP
Sbjct: 238 TQKLQGLIPGARYEVTVVSVRGFEESEPLTGFLTTVPDGP 277
Score = 43.9 bits (102), Expect = 1e-04
Identities = 56/218 (25%), Positives = 78/218 (35%), Gaps = 39/218 (17%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P QL A +T L W P Y V P A P A + PG+A D+ L
Sbjct: 277 PTQLRALNLTEGFAVLHWKPPQNPVDTYDVQVTAPGAPPLQA---ETPGSAVDYPLHDLV 333
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
T+Y + VR LR GP + P S T L AP +
Sbjct: 334 LHTNYT------ATVRGLR-------------GPNLTSPAS-----ITFTTGLEAPRDLE 369
Query: 123 PERIVISHARPRSLRVSWA--PALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQG 180
+ + PR+ ++W P + L +H GG+ Q + +P G L G
Sbjct: 370 AKEVT-----PRTALLTWTEPPVRPAGYLLSFHTP-----GGQNQEILLPGGITSHQLLG 419
Query: 181 LAPGTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPR 218
L P T+Y + A + +S T P PR
Sbjct: 420 LFPSTSYNARLQAMWGQSLLPPVSTSFTTGGLRIPFPR 457
>gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens]
Length = 4242
Score = 53.5 bits (127), Expect = 1e-07
Identities = 60/220 (27%), Positives = 82/220 (37%), Gaps = 36/220 (16%)
Query: 2 RPQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSA-------QPGAARRQQLPGNAT 54
R QL T++T+S RL W A + + VPS +P R +PG
Sbjct: 3655 RLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRH 3714
Query: 55 DWIWAGLDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAA 114
+ L T Y + L G GP + +S G A T
Sbjct: 3715 SAVLRDLRSGTLYSLTLY-------------------GLRGPHKA--DSIQGTARTLSPV 3753
Query: 115 LPAPEEAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRN 174
L +P + + S R S +V+W P A + + V + GGE Q V+V
Sbjct: 3754 LESPRD-----LQFSEIRETSAKVNWMPPPSRADS--FKVSYQLADGGEPQSVQVDGQAR 3806
Query: 175 CTTLQGLAPGTAYLVTVTAAFRSGRESALSAKACT-PDGP 213
LQGL PG Y VTV + L+ T PDGP
Sbjct: 3807 TQKLQGLIPGARYEVTVVSVRGFEESEPLTGFLTTVPDGP 3846
Score = 52.0 bits (123), Expect = 4e-07
Identities = 60/233 (25%), Positives = 86/233 (36%), Gaps = 26/233 (11%)
Query: 1 MRPQQLHATEITSSGFRLAWPPLLTADSGYYVLELVP----SAQPGAARRQQLPGNATDW 56
+R Q+ +ITS L+W T G + LV QP A R +PG+
Sbjct: 2195 LRLGQMTVRDITSDSLSLSW----TVPEGQFDHFLVQFKNGDGQPKAVR---VPGHEDGV 2247
Query: 57 IWAGLDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALP 116
+GL+PD Y + L + + P G A G + PA T+
Sbjct: 2248 TISGLEPDHKYKMNLYGFHGGQRVGPV--------SAVGLTAPGKDEEMAPASTEPPTPE 2299
Query: 117 APEEAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCT 176
P + E + ++ A P SL +SW G + G G+ + VP +
Sbjct: 2300 PPIKPRLEELTVTDATPDSLSLSWTVPEGQFDHFLVQYKNG---DGQPKATRVPGHEDRV 2356
Query: 177 TLQGLAPGTAY---LVTVTAAFRSGRESALSAKACTPDGPRPRPRPVPRAPTP 226
T+ GL P Y L R G SA+ A + P P P AP P
Sbjct: 2357 TISGLEPDNKYKMNLYGFHGGQRVGPVSAIGVTAAEEETPSP-TEPSMEAPEP 2408
Score = 51.2 bits (121), Expect = 7e-07
Identities = 55/222 (24%), Positives = 87/222 (39%), Gaps = 17/222 (7%)
Query: 5 QLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLDPD 64
+L T +T RL+W + V QP A + G+ + GLDPD
Sbjct: 1266 ELTVTGVTPDSLRLSWTVAQGPFDSFMVQYKDAQGQPQAV---PVAGDENEVTVPGLDPD 1322
Query: 65 TDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLA--ALPAPEEAG 122
Y + L + + P+ + +T P E + P+PT+L A +PEE
Sbjct: 1323 RKYKMNLYGLRGRQRVGPESVVAKTAPQE--------DVDETPSPTELGTEAPESPEEPL 1374
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLA 182
+ ++ + P SL + W GS + + VQ+ R G + V V + T+ GL
Sbjct: 1375 LGELTVTGSSPDSLSLFWTVPQGSFDS--FTVQYKD-RDGRPRAVRVGGKESEVTVGGLE 1431
Query: 183 PGTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPRPVPRAP 224
PG Y + + R +SA T P P +P
Sbjct: 1432 PGHKYKMHLYGLHEGQRVGPVSAVGVTAPQQEETP-PATESP 1472
Score = 48.1 bits (113), Expect = 6e-06
Identities = 60/231 (25%), Positives = 87/231 (37%), Gaps = 37/231 (16%)
Query: 5 QLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLDPD 64
+L T+ T L+W + V QP A R +PG+ +GL+PD
Sbjct: 3063 ELTVTDATPDSLSLSWMVPEGQFDHFLVQYRNGDGQPKAVR---VPGHEDGVTISGLEPD 3119
Query: 65 TDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAG------PAPTQLA--ALP 116
Y + L G G GP S G P+PT+ + A
Sbjct: 3120 HKYKMNLY-------------------GFHGGQRVGPVSAIGVTEEETPSPTEPSTEAPE 3160
Query: 117 APEEAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCT 176
APEE + ++ + P SL +SW G + + VQ+ R G+ Q V V +
Sbjct: 3161 APEEPLLGELTVTGSSPDSLSLSWTVPQGRFDS--FTVQYKD-RDGQPQVVRVRGEESEV 3217
Query: 177 TLQGLAPGTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPRPVPRAPTPG 227
T+ GL PG Y + + R +S T P P P+P P G
Sbjct: 3218 TVGGLEPGRKYKMHLYGLHEGQRVGPVSTVGIT----APLPTPLPVEPRLG 3264
Score = 47.8 bits (112), Expect = 8e-06
Identities = 59/236 (25%), Positives = 87/236 (36%), Gaps = 25/236 (10%)
Query: 2 RPQQLHATEITSSGFRLAWPPLLTADSGYYVLELVP----SAQPGAARRQQLPGNATDWI 57
R ++L T+ T L+W T G + LV QP A R +PG+
Sbjct: 2305 RLEELTVTDATPDSLSLSW----TVPEGQFDHFLVQYKNGDGQPKATR---VPGHEDRVT 2357
Query: 58 WAGLDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPA 117
+GL+PD Y + L + R P A + E P + A
Sbjct: 2358 ISGLEPDNKYKMNLYGFHGGQ---------RVGPVSAIGVTAAEEETPSPTEPSMEAPEP 2408
Query: 118 PEEAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTT 177
PEE + ++ + P SL +SW G + + VQ+ R G Q V V + T
Sbjct: 2409 PEEPLLGELTVTGSSPDSLSLSWTVPQGRFDS--FTVQYKD-RDGRPQVVRVGGEESEVT 2465
Query: 178 LQGLAPGTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPRPVPRAPTPGTASREP 233
+ GL PG Y + + R +S T P+ P PGT + P
Sbjct: 2466 VGGLEPGRKYKMHLYGLHEGRRVGPVSTVGVT--APQEDVDETPSPTEPGTEAPGP 2519
Score = 43.9 bits (102), Expect = 1e-04
Identities = 56/218 (25%), Positives = 78/218 (35%), Gaps = 39/218 (17%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P QL A +T L W P Y V P A P A + PG+A D+ L
Sbjct: 3846 PTQLRALNLTEGFAVLHWKPPQNPVDTYDVQVTAPGAPPLQA---ETPGSAVDYPLHDLV 3902
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
T+Y + VR LR GP + P S T L AP +
Sbjct: 3903 LHTNYT------ATVRGLR-------------GPNLTSPAS-----ITFTTGLEAPRDLE 3938
Query: 123 PERIVISHARPRSLRVSWA--PALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQG 180
+ + PR+ ++W P + L +H GG+ Q + +P G L G
Sbjct: 3939 AKEVT-----PRTALLTWTEPPVRPAGYLLSFHTP-----GGQNQEILLPGGITSHQLLG 3988
Query: 181 LAPGTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPR 218
L P T+Y + A + +S T P PR
Sbjct: 3989 LFPSTSYNARLQAMWGQSLLPPVSTSFTTGGLRIPFPR 4026
Score = 42.0 bits (97), Expect = 5e-04
Identities = 61/236 (25%), Positives = 92/236 (38%), Gaps = 35/236 (14%)
Query: 5 QLHATEITSSGFRLAWPPLLTADSGYYVLELVP----SAQPGAARRQQLPGNATDWIWAG 60
+L T+ T L+W T G + LV QP A R +PG+ +G
Sbjct: 2633 ELTMTDATPDSLSLSW----TVPEGQFDHFLVQYRNGDGQPKAVR---VPGHEDGVTISG 2685
Query: 61 LDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLA--ALPAP 118
L+PD Y + L + + P + G A+ E+ P+PT+L+ A P
Sbjct: 2686 LEPDHKYKMNLYGFHGGQRVGPISV--------IGVTAAEEET---PSPTELSTEAPEPP 2734
Query: 119 EEAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTL 178
EE + ++ + P SL +SW G + + VQ+ R G Q + V + T+
Sbjct: 2735 EEPLLGELTVTGSSPDSLSLSWTIPQGHFDS--FTVQYKD-RDGRPQVMRVRGEESEVTV 2791
Query: 179 QGLAPGTAYLVTVTAAFRSGRESALSAKACTPDG-------PRPRPRPVPRAPTPG 227
GL PG Y + + R +S T D P P P P P G
Sbjct: 2792 GGLEPGRKYKMHLYGLHEGRRVGPVSTVGVTEDEAETTQAVPTTTPEP-PNKPRLG 2846
Score = 42.0 bits (97), Expect = 5e-04
Identities = 54/221 (24%), Positives = 82/221 (37%), Gaps = 17/221 (7%)
Query: 5 QLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLDPD 64
+L T+ T L+W + V QP R +PG+ +GL+PD
Sbjct: 2847 ELTVTDATPDSLSLSWMVPEGQFDHFLVQYRNGDGQPKVVR---VPGHEDGVTISGLEPD 2903
Query: 65 TDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAGPE 124
Y + L + + P + T E P + P + A P P PEE
Sbjct: 2904 HKYKMNLYGFHGGQRVGPISVIGVTAAEEETPAPTEPSTEA-PEP--------PEEPLLG 2954
Query: 125 RIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLAPG 184
+ ++ + P SL +SW G + + VQ+ R G Q V V + T+ GL PG
Sbjct: 2955 ELTVTGSSPDSLSLSWTIPQGRFDS--FTVQYKD-RDGRPQVVRVRGEESEVTVGGLEPG 3011
Query: 185 TAYLVTVTAAFRSGRESALSAKACTPDGPRPRPRPVPRAPT 225
Y + + R +SA T P+ PT
Sbjct: 3012 CKYKMHLYGLHEGQRVGPVSAVGVT--APKDEAETTQAVPT 3050
Score = 40.0 bits (92), Expect = 0.002
Identities = 57/237 (24%), Positives = 86/237 (36%), Gaps = 46/237 (19%)
Query: 5 QLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQ----PGAARRQQLPGNATDWIWAG 60
++H E T+ R W P Y ++ +P+ + P AR +P +A+ + G
Sbjct: 756 RMHLLEETT--VRTEWTPA-PGPVDAYEIQFIPTTEGASPPFTAR---VPSSASAYDQRG 809
Query: 61 LDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEE 120
L P +Y V VR LR G G + T +
Sbjct: 810 LAPGQEYQVT------VRALR------------------GTSWGLPASKTITTMID---- 841
Query: 121 AGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQG 180
GP+ + + P +L + W L A + V G + R+EVP + T L
Sbjct: 842 -GPQDLRVVAVTPTTLELGW---LRPQAEVDRFVVSYVSAGNQRVRLEVPPEADGTLLTD 897
Query: 181 LAPGTAYLVTVTAAFRSGRESALSAKACTPDGP----RPRPRPVPRAPTPGTASREP 233
L PG Y+VTVTA S +A T P P P P+ ++ P
Sbjct: 898 LMPGVEYVVTVTAERGRAVSYPASVRANTGSSPLGLLGTTDEPPPSGPSTTQGAQAP 954
Score = 39.3 bits (90), Expect = 0.003
Identities = 55/225 (24%), Positives = 88/225 (39%), Gaps = 21/225 (9%)
Query: 4 QQLHATEITSSGFRLAWPPLLTADSGYYVLELVP-SAQPGAARRQQLPGNATDWIWAGLD 62
++L T +T + L+W T G + +V + G + + G+ + GLD
Sbjct: 1780 EELQVTTVTQNSVGLSW----TVPEGQFDSFVVQYKDRDGQPQVVPVEGSLREVSVPGLD 1835
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
P Y + L + + + P T AG + E+ A P P PAPE
Sbjct: 1836 PAHRYKLLLYGLHHGKRVGPISAVAIT----AGREETETETTA-PTP------PAPEPHL 1884
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLA 182
E + + A +L +SW G + + +Q+ R G+ Q V + RN TL GL
Sbjct: 1885 GE-LTVEEATSHTLHLSWMVTEGEFDS--FEIQYTD-RDGQLQMVRIGGDRNDITLSGLE 1940
Query: 183 PGTAYLVTVTAAFRSGRESALSAKACT-PDGPRPRPRPVPRAPTP 226
YLVT+ + +A T P+ +P P P
Sbjct: 1941 SDHRYLVTLYGFSDGKHVGPVHVEALTVPEEEKPSEPPTATPEPP 1985
Score = 39.3 bits (90), Expect = 0.003
Identities = 45/170 (26%), Positives = 64/170 (37%), Gaps = 27/170 (15%)
Query: 51 GNATDWIWAGLDPDTDYDVALV---------PESNVRLLRPQILRVRTRPGEAGPGASGP 101
G ++ GL+P Y + L P S V + PQ V P PG P
Sbjct: 2459 GEESEVTVGGLEPGRKYKMHLYGLHEGRRVGPVSTVGVTAPQE-DVDETPSPTEPGTEAP 2517
Query: 102 ESGAGPAPTQLAALPAPEEAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRG 161
GP PEE + ++ + P SL +SW G + + VQ+ R
Sbjct: 2518 ----GP----------PEEPLLGELTVTGSSPDSLSLSWTVPQGRFDS--FTVQYKD-RD 2560
Query: 162 GEAQRVEVPAGRNCTTLQGLAPGTAYLVTVTAAFRSGRESALSAKACTPD 211
G Q V V + T++GL PG Y + + R +SA T D
Sbjct: 2561 GRPQAVRVGGQESKVTVRGLEPGRKYKMHLYGLHEGRRLGPVSAVGVTED 2610
Score = 39.3 bits (90), Expect = 0.003
Identities = 51/210 (24%), Positives = 76/210 (36%), Gaps = 18/210 (8%)
Query: 5 QLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLDPD 64
+L E TSS RL+W + V QP A + D
Sbjct: 3452 ELTVAEETSSSLRLSWTVAQGPFDSFVVQYRDTDGQPRA-------------VPVAADQR 3498
Query: 65 TDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAP-EEAGP 123
T L P + L +L + + G + PE PAP P P EE
Sbjct: 3499 TVTVEDLEPGKKYKFLLYGLLGGKRLGPVSALGMTAPEEDT-PAPELAPEAPEPPEEPRL 3557
Query: 124 ERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLAP 183
+ ++ P S+R+SW+ A G + + VQ+ G+ Q + V ++ + GL P
Sbjct: 3558 GVLTVTDTTPDSMRLSWSVAQGPFDS--FVVQYED-TNGQPQALLVDGDQSKILISGLEP 3614
Query: 184 GTAYLVTVTAAFRSGRESALSAKACTPDGP 213
T Y + R LSA+ T P
Sbjct: 3615 STPYRFLLYGLHEGKRLGPLSAEGTTGLAP 3644
Score = 37.7 bits (86), Expect = 0.008
Identities = 30/84 (35%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 117 APEEAGPERIVISHARPRSL-----RVSWAPALGSAAALGYHVQFGPLRGGEAQ--RVEV 169
A E+ G E I R L R W PA G A Y +QF P G + V
Sbjct: 741 AGEDCGEEVPTIEGMRMHLLEETTVRTEWTPAPGPVDA--YEIQFIPTTEGASPPFTARV 798
Query: 170 PAGRNCTTLQGLAPGTAYLVTVTA 193
P+ + +GLAPG Y VTV A
Sbjct: 799 PSSASAYDQRGLAPGQEYQVTVRA 822
>gi|47132557 fibronectin 1 isoform 1 preproprotein [Homo sapiens]
Length = 2477
Score = 53.1 bits (126), Expect = 2e-07
Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 31/205 (15%)
Query: 6 LHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLDPDT 65
L +IT S L W PL ++ Y + +V + + + + + GL+P
Sbjct: 1273 LSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGI 1332
Query: 66 DYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAGPER 125
DYD++++ N GE+ P TQ A+P P +
Sbjct: 1333 DYDISVITLIN--------------GGESAPTTL----------TQQTAVPPPTD----- 1363
Query: 126 IVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGE-AQRVEVPAGRNCTTLQGLAPG 184
+ ++ P ++RV+WAP S + V++ P++ E + + N L L PG
Sbjct: 1364 LRFTNIGPDTMRVTWAPP-PSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPG 1422
Query: 185 TAYLVTVTAAFRSGRESALSAKACT 209
T Y+V+V++ + + L + T
Sbjct: 1423 TEYVVSVSSVYEQHESTPLRGRQKT 1447
Score = 50.1 bits (118), Expect = 2e-06
Identities = 50/204 (24%), Positives = 75/204 (36%), Gaps = 35/204 (17%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P + ++IT++ F + W +GY + P G R ++P + L
Sbjct: 1452 PTGIDFSDITANSFTVHWIAPRATITGYRIRHH-PEHFSGRPREDRVPHSRNSITLTNLT 1510
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
P T+Y V++V + E P G +S P L + A
Sbjct: 1511 PGTEYVVSIVALNG---------------REESPLLIGQQSTVSDVPRDLEVVAAT---- 1551
Query: 123 PERIVISHARPRSLRVSW-APALGSAAALGYHVQFGPLRGGE-AQRVEVPAGRNCTTLQG 180
P SL +SW APA+ Y + +G G Q VP ++ T+ G
Sbjct: 1552 ----------PTSLLISWDAPAV---TVRYYRITYGETGGNSPVQEFTVPGSKSTATISG 1598
Query: 181 LAPGTAYLVTVTAAFRSGRESALS 204
L PG Y +TV A G A S
Sbjct: 1599 LKPGVDYTITVYAVTGRGDSPASS 1622
Score = 48.1 bits (113), Expect = 6e-06
Identities = 53/214 (24%), Positives = 78/214 (36%), Gaps = 31/214 (14%)
Query: 9 TEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLDPDTDYD 68
TEIT+S F ++W SG+ V E S + + LP AT L P Y
Sbjct: 729 TEITASSFVVSWVSASDTVSGFRV-EYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYI 787
Query: 69 VALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAGPERIVI 128
V + S GE S ++ A AP P ++ IV+
Sbjct: 788 VNVYQISE--------------DGEQSLILSTSQTTAPDAPPD----PTVDQVDDTSIVV 829
Query: 129 SHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLAPGTAYL 188
+RP+ A GY + + P G + + +P N TL L PG Y
Sbjct: 830 RWSRPQ------------APITGYRIVYSPSVEGSSTELNLPETANSVTLSDLQPGVQYN 877
Query: 189 VTVTAAFRSGRESALSAKACTPDGPRPRPRPVPR 222
+T+ A + + + + T PR P PR
Sbjct: 878 ITIYAVEENQESTPVVIQQETTGTPRSDTVPSPR 911
Score = 44.3 bits (103), Expect = 9e-05
Identities = 41/193 (21%), Positives = 71/193 (36%), Gaps = 33/193 (17%)
Query: 2 RPQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGL 61
+P Q+ T++ + + W P + +GY V P PG + + + T+ GL
Sbjct: 1635 KPSQMQVTDVQDNSISVKWLPSSSPVTGYRV-TTTPKNGPGPTKTKTAGPDQTEMTIEGL 1693
Query: 62 DPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEA 121
P +Y V++ ++ GE+ P L
Sbjct: 1694 QPTVEYVVSVYAQN--------------PSGESQP---------------LVQTAVTNID 1724
Query: 122 GPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTT-LQG 180
P+ + + S++++W G + Y V + G + P G T LQG
Sbjct: 1725 RPKGLAFTDVDVDSIKIAWESPQGQVSR--YRVTYSSPEDGIHELFPAPDGEEDTAELQG 1782
Query: 181 LAPGTAYLVTVTA 193
L PG+ Y V+V A
Sbjct: 1783 LRPGSEYTVSVVA 1795
Score = 43.9 bits (102), Expect = 1e-04
Identities = 54/227 (23%), Positives = 84/227 (37%), Gaps = 38/227 (16%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P++ T+ T + ++W +G+ V + VP+ +R P + + GL
Sbjct: 1908 PRRARVTDATETTITISWRTKTETITGFQV-DAVPANGQTPIQRTIKP-DVRSYTITGLQ 1965
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
P TDY + L ++ P ++ T A AP+ L L
Sbjct: 1966 PGTDYKIYLYTLNDNARSSPVVIDAST---------------AIDAPSNLRFLATT---- 2006
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGR---NCTTLQ 179
P SL VSW P A GY +++ + G R VP R T+
Sbjct: 2007 ----------PNSLLVSWQPP--RARITGYIIKYE--KPGSPPREVVPRPRPGVTEATIT 2052
Query: 180 GLAPGTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPRPVPRAPTP 226
GL PGT Y + V A + + L + T + P+ P P P
Sbjct: 2053 GLEPGTEYTIYVIALKNNQKSEPLIGRKKTDELPQLVTLPHPNLHGP 2099
Score = 42.7 bits (99), Expect = 3e-04
Identities = 49/217 (22%), Positives = 84/217 (38%), Gaps = 19/217 (8%)
Query: 3 PQQLHATEITS--SGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAG 60
P ++ TE S + + W + Y+L P G + +PG+ + G
Sbjct: 611 PVEVFITETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKG 670
Query: 61 LDPDTDYDVALVPESNVRLLRPQILRVR-TRPGEAGPGASGPESGAGPAPTQLAALPAPE 119
L P Y+ L+ S + ++ R T + P S +G T + L A
Sbjct: 671 LKPGVVYEGQLI--SIQQYGHQEVTRFDFTTTSTSTPVTSNTVTG---ETTPFSPLVATS 725
Query: 120 EAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFG-PLRGGEAQRVEVPAGRNCTTL 178
E+ ++ S VSW A S G+ V++ G E Q +++P+ +
Sbjct: 726 ES------VTEITASSFVVSWVSA--SDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNI 777
Query: 179 QGLAPGTAYLVTVTAAFRSGRESAL--SAKACTPDGP 213
L PG Y+V V G +S + +++ PD P
Sbjct: 778 PDLLPGRKYIVNVYQISEDGEQSLILSTSQTTAPDAP 814
Score = 40.4 bits (93), Expect = 0.001
Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 35/211 (16%)
Query: 3 PQQLHATEITSSGFRLAWP-PLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGL 61
P+ L T + ++W P +T YY + + + +PG+ + +GL
Sbjct: 1542 PRDLEVVAATPTSLLISWDAPAVTVR--YYRITYGETGGNSPVQEFTVPGSKSTATISGL 1599
Query: 62 DPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEA 121
P DY + + + G PA ++ ++ E
Sbjct: 1600 KPGVDYTITVYAVTG--------------------------RGDSPASSKPISINYRTEI 1633
Query: 122 G-PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCT--TL 178
P ++ ++ + S+ V W P+ S+ GY V P G + + AG + T T+
Sbjct: 1634 DKPSQMQVTDVQDNSISVKWLPS--SSPVTGYRVTTTPKNGPGPTKTKT-AGPDQTEMTI 1690
Query: 179 QGLAPGTAYLVTVTAAFRSGRESALSAKACT 209
+GL P Y+V+V A SG L A T
Sbjct: 1691 EGLQPTVEYVVSVYAQNPSGESQPLVQTAVT 1721
Score = 39.7 bits (91), Expect = 0.002
Identities = 67/275 (24%), Positives = 103/275 (37%), Gaps = 72/275 (26%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWI-WAGL 61
P+ L E+T + W P +A +GY V +++P PG Q+LP + + GL
Sbjct: 910 PRDLQFVEVTDVKVTIMWTPPESAVTGYRV-DVIPVNLPG-EHGQRLPISRNTFAEVTGL 967
Query: 62 DPDTDY----------------------------DVALVPESNVRLL------RPQILRV 87
P Y ++ V E++ +L R QI
Sbjct: 968 SPGVTYYFKVFAVSHGRESKPLTAQQTTKLDAPTNLQFVNETDSTVLVRWTPPRAQITGY 1027
Query: 88 R-----TRPGE-----AGPGASG-PESGAGPA---PTQLAALPAPEEAGPERIVISHARP 133
R TR G+ GP S P PA L A+ +E+ V + +P
Sbjct: 1028 RLTVGLTRRGQPRQYNVGPSVSKYPLRNLQPASEYTVSLVAIKGNQESPKATGVFTTLQP 1087
Query: 134 RS-------------LRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQG 180
S + ++W P A +G+ + P +GGEA R EV + + G
Sbjct: 1088 GSSIPPYNTEVTETTIVITWTP----APRIGFKLGVRPSQGGEAPR-EVTSDSGSIVVSG 1142
Query: 181 LAPGTAYLVTVTAAFRSG--RESALSAKACTPDGP 213
L PG Y+ T+ R G R++ + K TP P
Sbjct: 1143 LTPGVEYVYTI-QVLRDGQERDAPIVNKVVTPLSP 1176
Score = 39.3 bits (90), Expect = 0.003
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 123 PERIVISHARPRSLRVSW-APALGSAAALGYHVQFGPLR-GGEAQRVEVPAGRNCTTLQG 180
P I S S V W AP A GY ++ P G + VP RN TL
Sbjct: 1452 PTGIDFSDITANSFTVHWIAPR---ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTN 1508
Query: 181 LAPGTAYLVTVTAAFRSGRESA---LSAKACTPDGPR 214
L PGT Y+V++ A +GRE + + ++ D PR
Sbjct: 1509 LTPGTEYVVSIVAL--NGREESPLLIGQQSTVSDVPR 1543
Score = 37.0 bits (84), Expect = 0.014
Identities = 40/207 (19%), Positives = 71/207 (34%), Gaps = 30/207 (14%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P L T++T + W P +GY V + P + G + L +++ + +GL
Sbjct: 1816 PTDLKFTQVTPTSLSAQWTPPNVQLTGYRV-RVTPKEKTGPMKEINLAPDSSSVVVSGLM 1874
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
T Y+V++ + R P Q +
Sbjct: 1875 VATKYEVSVYALKDTLTSR---------------------------PAQGVVTTLENVSP 1907
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLA 182
P R ++ A ++ +SW + G+ V P G + + T+ GL
Sbjct: 1908 PRRARVTDATETTITISWRTK--TETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQ 1965
Query: 183 PGTAYLVTVTAAFRSGRESALSAKACT 209
PGT Y + + + R S + A T
Sbjct: 1966 PGTDYKIYLYTLNDNARSSPVVIDAST 1992
Score = 35.4 bits (80), Expect = 0.042
Identities = 43/203 (21%), Positives = 72/203 (35%), Gaps = 31/203 (15%)
Query: 10 EITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLDPDTDYDV 69
++ + + W +GY ++ PS + G++ LP A + L P Y++
Sbjct: 821 QVDDTSIVVRWSRPQAPITGYRIV-YSPSVE-GSSTELNLPETANSVTLSDLQPGVQYNI 878
Query: 70 ALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAGPERIVIS 129
+ + P +++ T P S P+P L + +
Sbjct: 879 TIYAVEENQESTPVVIQQET--------TGTPRSDTVPSPRDLQFVEVTDV--------- 921
Query: 130 HARPRSLRVSWAPALGSAAALGYHVQFGP--LRGGEAQRVEVPAGRNC-TTLQGLAPGTA 186
+ + W P +A GY V P L G QR+ P RN + GL+PG
Sbjct: 922 -----KVTIMWTPP--ESAVTGYRVDVIPVNLPGEHGQRL--PISRNTFAEVTGLSPGVT 972
Query: 187 YLVTVTAAFRSGRESALSAKACT 209
Y V A L+A+ T
Sbjct: 973 YYFKVFAVSHGRESKPLTAQQTT 995
>gi|47132551 fibronectin 1 isoform 2 preproprotein [Homo sapiens]
Length = 2421
Score = 53.1 bits (126), Expect = 2e-07
Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 31/205 (15%)
Query: 6 LHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLDPDT 65
L +IT S L W PL ++ Y + +V + + + + + GL+P
Sbjct: 1273 LSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGI 1332
Query: 66 DYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAGPER 125
DYD++++ N GE+ P TQ A+P P +
Sbjct: 1333 DYDISVITLIN--------------GGESAPTTL----------TQQTAVPPPTD----- 1363
Query: 126 IVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGE-AQRVEVPAGRNCTTLQGLAPG 184
+ ++ P ++RV+WAP S + V++ P++ E + + N L L PG
Sbjct: 1364 LRFTNIGPDTMRVTWAPP-PSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPG 1422
Query: 185 TAYLVTVTAAFRSGRESALSAKACT 209
T Y+V+V++ + + L + T
Sbjct: 1423 TEYVVSVSSVYEQHESTPLRGRQKT 1447
Score = 50.1 bits (118), Expect = 2e-06
Identities = 50/204 (24%), Positives = 75/204 (36%), Gaps = 35/204 (17%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P + ++IT++ F + W +GY + P G R ++P + L
Sbjct: 1452 PTGIDFSDITANSFTVHWIAPRATITGYRIRHH-PEHFSGRPREDRVPHSRNSITLTNLT 1510
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
P T+Y V++V + E P G +S P L + A
Sbjct: 1511 PGTEYVVSIVALNG---------------REESPLLIGQQSTVSDVPRDLEVVAAT---- 1551
Query: 123 PERIVISHARPRSLRVSW-APALGSAAALGYHVQFGPLRGGE-AQRVEVPAGRNCTTLQG 180
P SL +SW APA+ Y + +G G Q VP ++ T+ G
Sbjct: 1552 ----------PTSLLISWDAPAV---TVRYYRITYGETGGNSPVQEFTVPGSKSTATISG 1598
Query: 181 LAPGTAYLVTVTAAFRSGRESALS 204
L PG Y +TV A G A S
Sbjct: 1599 LKPGVDYTITVYAVTGRGDSPASS 1622
Score = 48.1 bits (113), Expect = 6e-06
Identities = 53/214 (24%), Positives = 78/214 (36%), Gaps = 31/214 (14%)
Query: 9 TEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLDPDTDYD 68
TEIT+S F ++W SG+ V E S + + LP AT L P Y
Sbjct: 729 TEITASSFVVSWVSASDTVSGFRV-EYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYI 787
Query: 69 VALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAGPERIVI 128
V + S GE S ++ A AP P ++ IV+
Sbjct: 788 VNVYQISE--------------DGEQSLILSTSQTTAPDAPPD----PTVDQVDDTSIVV 829
Query: 129 SHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLAPGTAYL 188
+RP+ A GY + + P G + + +P N TL L PG Y
Sbjct: 830 RWSRPQ------------APITGYRIVYSPSVEGSSTELNLPETANSVTLSDLQPGVQYN 877
Query: 189 VTVTAAFRSGRESALSAKACTPDGPRPRPRPVPR 222
+T+ A + + + + T PR P PR
Sbjct: 878 ITIYAVEENQESTPVVIQQETTGTPRSDTVPSPR 911
Score = 44.3 bits (103), Expect = 9e-05
Identities = 41/193 (21%), Positives = 71/193 (36%), Gaps = 33/193 (17%)
Query: 2 RPQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGL 61
+P Q+ T++ + + W P + +GY V P PG + + + T+ GL
Sbjct: 1635 KPSQMQVTDVQDNSISVKWLPSSSPVTGYRV-TTTPKNGPGPTKTKTAGPDQTEMTIEGL 1693
Query: 62 DPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEA 121
P +Y V++ ++ GE+ P L
Sbjct: 1694 QPTVEYVVSVYAQN--------------PSGESQP---------------LVQTAVTNID 1724
Query: 122 GPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTT-LQG 180
P+ + + S++++W G + Y V + G + P G T LQG
Sbjct: 1725 RPKGLAFTDVDVDSIKIAWESPQGQVSR--YRVTYSSPEDGIHELFPAPDGEEDTAELQG 1782
Query: 181 LAPGTAYLVTVTA 193
L PG+ Y V+V A
Sbjct: 1783 LRPGSEYTVSVVA 1795
Score = 42.7 bits (99), Expect = 3e-04
Identities = 49/217 (22%), Positives = 84/217 (38%), Gaps = 19/217 (8%)
Query: 3 PQQLHATEITS--SGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAG 60
P ++ TE S + + W + Y+L P G + +PG+ + G
Sbjct: 611 PVEVFITETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKG 670
Query: 61 LDPDTDYDVALVPESNVRLLRPQILRVR-TRPGEAGPGASGPESGAGPAPTQLAALPAPE 119
L P Y+ L+ S + ++ R T + P S +G T + L A
Sbjct: 671 LKPGVVYEGQLI--SIQQYGHQEVTRFDFTTTSTSTPVTSNTVTG---ETTPFSPLVATS 725
Query: 120 EAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFG-PLRGGEAQRVEVPAGRNCTTL 178
E+ ++ S VSW A S G+ V++ G E Q +++P+ +
Sbjct: 726 ES------VTEITASSFVVSWVSA--SDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNI 777
Query: 179 QGLAPGTAYLVTVTAAFRSGRESAL--SAKACTPDGP 213
L PG Y+V V G +S + +++ PD P
Sbjct: 778 PDLLPGRKYIVNVYQISEDGEQSLILSTSQTTAPDAP 814
Score = 41.6 bits (96), Expect = 6e-04
Identities = 56/238 (23%), Positives = 87/238 (36%), Gaps = 42/238 (17%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P++ T+ T + ++W +G+ V + VP+ +R P + + GL
Sbjct: 1908 PRRARVTDATETTITISWRTKTETITGFQV-DAVPANGQTPIQRTIKP-DVRSYTITGLQ 1965
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
P TDY + L ++ P ++ T A AP+ L L
Sbjct: 1966 PGTDYKIYLYTLNDNARSSPVVIDAST---------------AIDAPSNLRFLATT---- 2006
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGR---NCTTLQ 179
P SL VSW P A GY +++ + G R VP R T+
Sbjct: 2007 ----------PNSLLVSWQPP--RARITGYIIKYE--KPGSPPREVVPRPRPGVTEATIT 2052
Query: 180 GLAPGTAYLVTVTAAFRSGRESALSAK----ACTPDGPRPRPRPVPRAPTPGTASREP 233
GL PGT Y + V A + + L + TP P PGT+ ++P
Sbjct: 2053 GLEPGTEYTIYVIALKNNQKSEPLIGRKKTVQKTPFVTHPGYDTGNGIQLPGTSGQQP 2110
Score = 40.4 bits (93), Expect = 0.001
Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 35/211 (16%)
Query: 3 PQQLHATEITSSGFRLAWP-PLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGL 61
P+ L T + ++W P +T YY + + + +PG+ + +GL
Sbjct: 1542 PRDLEVVAATPTSLLISWDAPAVTVR--YYRITYGETGGNSPVQEFTVPGSKSTATISGL 1599
Query: 62 DPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEA 121
P DY + + + G PA ++ ++ E
Sbjct: 1600 KPGVDYTITVYAVTG--------------------------RGDSPASSKPISINYRTEI 1633
Query: 122 G-PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCT--TL 178
P ++ ++ + S+ V W P+ S+ GY V P G + + AG + T T+
Sbjct: 1634 DKPSQMQVTDVQDNSISVKWLPS--SSPVTGYRVTTTPKNGPGPTKTKT-AGPDQTEMTI 1690
Query: 179 QGLAPGTAYLVTVTAAFRSGRESALSAKACT 209
+GL P Y+V+V A SG L A T
Sbjct: 1691 EGLQPTVEYVVSVYAQNPSGESQPLVQTAVT 1721
Score = 39.7 bits (91), Expect = 0.002
Identities = 67/275 (24%), Positives = 103/275 (37%), Gaps = 72/275 (26%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWI-WAGL 61
P+ L E+T + W P +A +GY V +++P PG Q+LP + + GL
Sbjct: 910 PRDLQFVEVTDVKVTIMWTPPESAVTGYRV-DVIPVNLPG-EHGQRLPISRNTFAEVTGL 967
Query: 62 DPDTDY----------------------------DVALVPESNVRLL------RPQILRV 87
P Y ++ V E++ +L R QI
Sbjct: 968 SPGVTYYFKVFAVSHGRESKPLTAQQTTKLDAPTNLQFVNETDSTVLVRWTPPRAQITGY 1027
Query: 88 R-----TRPGE-----AGPGASG-PESGAGPA---PTQLAALPAPEEAGPERIVISHARP 133
R TR G+ GP S P PA L A+ +E+ V + +P
Sbjct: 1028 RLTVGLTRRGQPRQYNVGPSVSKYPLRNLQPASEYTVSLVAIKGNQESPKATGVFTTLQP 1087
Query: 134 RS-------------LRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQG 180
S + ++W P A +G+ + P +GGEA R EV + + G
Sbjct: 1088 GSSIPPYNTEVTETTIVITWTP----APRIGFKLGVRPSQGGEAPR-EVTSDSGSIVVSG 1142
Query: 181 LAPGTAYLVTVTAAFRSG--RESALSAKACTPDGP 213
L PG Y+ T+ R G R++ + K TP P
Sbjct: 1143 LTPGVEYVYTI-QVLRDGQERDAPIVNKVVTPLSP 1176
Score = 39.3 bits (90), Expect = 0.003
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 123 PERIVISHARPRSLRVSW-APALGSAAALGYHVQFGPLR-GGEAQRVEVPAGRNCTTLQG 180
P I S S V W AP A GY ++ P G + VP RN TL
Sbjct: 1452 PTGIDFSDITANSFTVHWIAPR---ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTN 1508
Query: 181 LAPGTAYLVTVTAAFRSGRESA---LSAKACTPDGPR 214
L PGT Y+V++ A +GRE + + ++ D PR
Sbjct: 1509 LTPGTEYVVSIVAL--NGREESPLLIGQQSTVSDVPR 1543
Score = 37.0 bits (84), Expect = 0.014
Identities = 40/207 (19%), Positives = 71/207 (34%), Gaps = 30/207 (14%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P L T++T + W P +GY V + P + G + L +++ + +GL
Sbjct: 1816 PTDLKFTQVTPTSLSAQWTPPNVQLTGYRV-RVTPKEKTGPMKEINLAPDSSSVVVSGLM 1874
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
T Y+V++ + R P Q +
Sbjct: 1875 VATKYEVSVYALKDTLTSR---------------------------PAQGVVTTLENVSP 1907
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLA 182
P R ++ A ++ +SW + G+ V P G + + T+ GL
Sbjct: 1908 PRRARVTDATETTITISWRTK--TETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQ 1965
Query: 183 PGTAYLVTVTAAFRSGRESALSAKACT 209
PGT Y + + + R S + A T
Sbjct: 1966 PGTDYKIYLYTLNDNARSSPVVIDAST 1992
Score = 35.4 bits (80), Expect = 0.042
Identities = 43/203 (21%), Positives = 72/203 (35%), Gaps = 31/203 (15%)
Query: 10 EITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLDPDTDYDV 69
++ + + W +GY ++ PS + G++ LP A + L P Y++
Sbjct: 821 QVDDTSIVVRWSRPQAPITGYRIV-YSPSVE-GSSTELNLPETANSVTLSDLQPGVQYNI 878
Query: 70 ALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAGPERIVIS 129
+ + P +++ T P S P+P L + +
Sbjct: 879 TIYAVEENQESTPVVIQQET--------TGTPRSDTVPSPRDLQFVEVTDV--------- 921
Query: 130 HARPRSLRVSWAPALGSAAALGYHVQFGP--LRGGEAQRVEVPAGRNC-TTLQGLAPGTA 186
+ + W P +A GY V P L G QR+ P RN + GL+PG
Sbjct: 922 -----KVTIMWTPP--ESAVTGYRVDVIPVNLPGEHGQRL--PISRNTFAEVTGLSPGVT 972
Query: 187 YLVTVTAAFRSGRESALSAKACT 209
Y V A L+A+ T
Sbjct: 973 YYFKVFAVSHGRESKPLTAQQTT 995
>gi|16933542 fibronectin 1 isoform 3 preproprotein [Homo sapiens]
Length = 2355
Score = 50.1 bits (118), Expect = 2e-06
Identities = 50/204 (24%), Positives = 75/204 (36%), Gaps = 35/204 (17%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P + ++IT++ F + W +GY + P G R ++P + L
Sbjct: 1361 PTGIDFSDITANSFTVHWIAPRATITGYRIRHH-PEHFSGRPREDRVPHSRNSITLTNLT 1419
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
P T+Y V++V + E P G +S P L + A
Sbjct: 1420 PGTEYVVSIVALNG---------------REESPLLIGQQSTVSDVPRDLEVVAAT---- 1460
Query: 123 PERIVISHARPRSLRVSW-APALGSAAALGYHVQFGPLRGGE-AQRVEVPAGRNCTTLQG 180
P SL +SW APA+ Y + +G G Q VP ++ T+ G
Sbjct: 1461 ----------PTSLLISWDAPAV---TVRYYRITYGETGGNSPVQEFTVPGSKSTATISG 1507
Query: 181 LAPGTAYLVTVTAAFRSGRESALS 204
L PG Y +TV A G A S
Sbjct: 1508 LKPGVDYTITVYAVTGRGDSPASS 1531
Score = 48.1 bits (113), Expect = 6e-06
Identities = 53/214 (24%), Positives = 78/214 (36%), Gaps = 31/214 (14%)
Query: 9 TEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLDPDTDYD 68
TEIT+S F ++W SG+ V E S + + LP AT L P Y
Sbjct: 729 TEITASSFVVSWVSASDTVSGFRV-EYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYI 787
Query: 69 VALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAGPERIVI 128
V + S GE S ++ A AP P ++ IV+
Sbjct: 788 VNVYQISE--------------DGEQSLILSTSQTTAPDAPPD----PTVDQVDDTSIVV 829
Query: 129 SHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLAPGTAYL 188
+RP+ A GY + + P G + + +P N TL L PG Y
Sbjct: 830 RWSRPQ------------APITGYRIVYSPSVEGSSTELNLPETANSVTLSDLQPGVQYN 877
Query: 189 VTVTAAFRSGRESALSAKACTPDGPRPRPRPVPR 222
+T+ A + + + + T PR P PR
Sbjct: 878 ITIYAVEENQESTPVVIQQETTGTPRSDTVPSPR 911
Score = 44.3 bits (103), Expect = 9e-05
Identities = 41/193 (21%), Positives = 71/193 (36%), Gaps = 33/193 (17%)
Query: 2 RPQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGL 61
+P Q+ T++ + + W P + +GY V P PG + + + T+ GL
Sbjct: 1544 KPSQMQVTDVQDNSISVKWLPSSSPVTGYRV-TTTPKNGPGPTKTKTAGPDQTEMTIEGL 1602
Query: 62 DPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEA 121
P +Y V++ ++ GE+ P L
Sbjct: 1603 QPTVEYVVSVYAQN--------------PSGESQP---------------LVQTAVTNID 1633
Query: 122 GPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTT-LQG 180
P+ + + S++++W G + Y V + G + P G T LQG
Sbjct: 1634 RPKGLAFTDVDVDSIKIAWESPQGQVSR--YRVTYSSPEDGIHELFPAPDGEEDTAELQG 1691
Query: 181 LAPGTAYLVTVTA 193
L PG+ Y V+V A
Sbjct: 1692 LRPGSEYTVSVVA 1704
Score = 43.9 bits (102), Expect = 1e-04
Identities = 54/227 (23%), Positives = 84/227 (37%), Gaps = 38/227 (16%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P++ T+ T + ++W +G+ V + VP+ +R P + + GL
Sbjct: 1817 PRRARVTDATETTITISWRTKTETITGFQV-DAVPANGQTPIQRTIKP-DVRSYTITGLQ 1874
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
P TDY + L ++ P ++ T A AP+ L L
Sbjct: 1875 PGTDYKIYLYTLNDNARSSPVVIDAST---------------AIDAPSNLRFLATT---- 1915
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGR---NCTTLQ 179
P SL VSW P A GY +++ + G R VP R T+
Sbjct: 1916 ----------PNSLLVSWQPP--RARITGYIIKYE--KPGSPPREVVPRPRPGVTEATIT 1961
Query: 180 GLAPGTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPRPVPRAPTP 226
GL PGT Y + V A + + L + T + P+ P P P
Sbjct: 1962 GLEPGTEYTIYVIALKNNQKSEPLIGRKKTDELPQLVTLPHPNLHGP 2008
Score = 42.7 bits (99), Expect = 3e-04
Identities = 49/217 (22%), Positives = 84/217 (38%), Gaps = 19/217 (8%)
Query: 3 PQQLHATEITS--SGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAG 60
P ++ TE S + + W + Y+L P G + +PG+ + G
Sbjct: 611 PVEVFITETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKG 670
Query: 61 LDPDTDYDVALVPESNVRLLRPQILRVR-TRPGEAGPGASGPESGAGPAPTQLAALPAPE 119
L P Y+ L+ S + ++ R T + P S +G T + L A
Sbjct: 671 LKPGVVYEGQLI--SIQQYGHQEVTRFDFTTTSTSTPVTSNTVTG---ETTPFSPLVATS 725
Query: 120 EAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFG-PLRGGEAQRVEVPAGRNCTTL 178
E+ ++ S VSW A S G+ V++ G E Q +++P+ +
Sbjct: 726 ES------VTEITASSFVVSWVSA--SDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNI 777
Query: 179 QGLAPGTAYLVTVTAAFRSGRESAL--SAKACTPDGP 213
L PG Y+V V G +S + +++ PD P
Sbjct: 778 PDLLPGRKYIVNVYQISEDGEQSLILSTSQTTAPDAP 814
Score = 41.6 bits (96), Expect = 6e-04
Identities = 41/210 (19%), Positives = 83/210 (39%), Gaps = 33/210 (15%)
Query: 3 PQQLHATEITSSG-FRLAWPPLLTAD-SGYYVLELVPSAQPGAARRQQLPGNATDWIWAG 60
P LH +G ++W T D +GY + + Q G + + + + + +
Sbjct: 1177 PTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDN 1236
Query: 61 LDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEE 120
L P +Y+V++ + + P + T + A+P P +
Sbjct: 1237 LSPGLEYNVSVYTVKDDKESVPI------------------------SDTIIPAVPPPTD 1272
Query: 121 AGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGE-AQRVEVPAGRNCTTLQ 179
+ ++ P ++RV+WAP S + V++ P++ E + + N L
Sbjct: 1273 -----LRFTNIGPDTMRVTWAPP-PSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLT 1326
Query: 180 GLAPGTAYLVTVTAAFRSGRESALSAKACT 209
L PGT Y+V+V++ + + L + T
Sbjct: 1327 NLLPGTEYVVSVSSVYEQHESTPLRGRQKT 1356
Score = 40.4 bits (93), Expect = 0.001
Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 35/211 (16%)
Query: 3 PQQLHATEITSSGFRLAWP-PLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGL 61
P+ L T + ++W P +T YY + + + +PG+ + +GL
Sbjct: 1451 PRDLEVVAATPTSLLISWDAPAVTVR--YYRITYGETGGNSPVQEFTVPGSKSTATISGL 1508
Query: 62 DPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEA 121
P DY + + + G PA ++ ++ E
Sbjct: 1509 KPGVDYTITVYAVTG--------------------------RGDSPASSKPISINYRTEI 1542
Query: 122 G-PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCT--TL 178
P ++ ++ + S+ V W P+ S+ GY V P G + + AG + T T+
Sbjct: 1543 DKPSQMQVTDVQDNSISVKWLPS--SSPVTGYRVTTTPKNGPGPTKTKT-AGPDQTEMTI 1599
Query: 179 QGLAPGTAYLVTVTAAFRSGRESALSAKACT 209
+GL P Y+V+V A SG L A T
Sbjct: 1600 EGLQPTVEYVVSVYAQNPSGESQPLVQTAVT 1630
Score = 39.7 bits (91), Expect = 0.002
Identities = 67/275 (24%), Positives = 103/275 (37%), Gaps = 72/275 (26%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWI-WAGL 61
P+ L E+T + W P +A +GY V +++P PG Q+LP + + GL
Sbjct: 910 PRDLQFVEVTDVKVTIMWTPPESAVTGYRV-DVIPVNLPG-EHGQRLPISRNTFAEVTGL 967
Query: 62 DPDTDY----------------------------DVALVPESNVRLL------RPQILRV 87
P Y ++ V E++ +L R QI
Sbjct: 968 SPGVTYYFKVFAVSHGRESKPLTAQQTTKLDAPTNLQFVNETDSTVLVRWTPPRAQITGY 1027
Query: 88 R-----TRPGE-----AGPGASG-PESGAGPA---PTQLAALPAPEEAGPERIVISHARP 133
R TR G+ GP S P PA L A+ +E+ V + +P
Sbjct: 1028 RLTVGLTRRGQPRQYNVGPSVSKYPLRNLQPASEYTVSLVAIKGNQESPKATGVFTTLQP 1087
Query: 134 RS-------------LRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQG 180
S + ++W P A +G+ + P +GGEA R EV + + G
Sbjct: 1088 GSSIPPYNTEVTETTIVITWTP----APRIGFKLGVRPSQGGEAPR-EVTSDSGSIVVSG 1142
Query: 181 LAPGTAYLVTVTAAFRSG--RESALSAKACTPDGP 213
L PG Y+ T+ R G R++ + K TP P
Sbjct: 1143 LTPGVEYVYTI-QVLRDGQERDAPIVNKVVTPLSP 1176
Score = 39.3 bits (90), Expect = 0.003
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 123 PERIVISHARPRSLRVSW-APALGSAAALGYHVQFGPLR-GGEAQRVEVPAGRNCTTLQG 180
P I S S V W AP A GY ++ P G + VP RN TL
Sbjct: 1361 PTGIDFSDITANSFTVHWIAPR---ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTN 1417
Query: 181 LAPGTAYLVTVTAAFRSGRESA---LSAKACTPDGPR 214
L PGT Y+V++ A +GRE + + ++ D PR
Sbjct: 1418 LTPGTEYVVSIVAL--NGREESPLLIGQQSTVSDVPR 1452
Score = 37.0 bits (84), Expect = 0.014
Identities = 40/207 (19%), Positives = 71/207 (34%), Gaps = 30/207 (14%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P L T++T + W P +GY V + P + G + L +++ + +GL
Sbjct: 1725 PTDLKFTQVTPTSLSAQWTPPNVQLTGYRV-RVTPKEKTGPMKEINLAPDSSSVVVSGLM 1783
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
T Y+V++ + R P Q +
Sbjct: 1784 VATKYEVSVYALKDTLTSR---------------------------PAQGVVTTLENVSP 1816
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLA 182
P R ++ A ++ +SW + G+ V P G + + T+ GL
Sbjct: 1817 PRRARVTDATETTITISWRTK--TETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQ 1874
Query: 183 PGTAYLVTVTAAFRSGRESALSAKACT 209
PGT Y + + + R S + A T
Sbjct: 1875 PGTDYKIYLYTLNDNARSSPVVIDAST 1901
Score = 35.4 bits (80), Expect = 0.042
Identities = 43/203 (21%), Positives = 72/203 (35%), Gaps = 31/203 (15%)
Query: 10 EITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLDPDTDYDV 69
++ + + W +GY ++ PS + G++ LP A + L P Y++
Sbjct: 821 QVDDTSIVVRWSRPQAPITGYRIV-YSPSVE-GSSTELNLPETANSVTLSDLQPGVQYNI 878
Query: 70 ALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAGPERIVIS 129
+ + P +++ T P S P+P L + +
Sbjct: 879 TIYAVEENQESTPVVIQQET--------TGTPRSDTVPSPRDLQFVEVTDV--------- 921
Query: 130 HARPRSLRVSWAPALGSAAALGYHVQFGP--LRGGEAQRVEVPAGRNC-TTLQGLAPGTA 186
+ + W P +A GY V P L G QR+ P RN + GL+PG
Sbjct: 922 -----KVTIMWTPP--ESAVTGYRVDVIPVNLPGEHGQRL--PISRNTFAEVTGLSPGVT 972
Query: 187 YLVTVTAAFRSGRESALSAKACT 209
Y V A L+A+ T
Sbjct: 973 YYFKVFAVSHGRESKPLTAQQTT 995
>gi|47132555 fibronectin 1 isoform 4 preproprotein [Homo sapiens]
Length = 2330
Score = 50.1 bits (118), Expect = 2e-06
Identities = 50/204 (24%), Positives = 75/204 (36%), Gaps = 35/204 (17%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P + ++IT++ F + W +GY + P G R ++P + L
Sbjct: 1361 PTGIDFSDITANSFTVHWIAPRATITGYRIRHH-PEHFSGRPREDRVPHSRNSITLTNLT 1419
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
P T+Y V++V + E P G +S P L + A
Sbjct: 1420 PGTEYVVSIVALNG---------------REESPLLIGQQSTVSDVPRDLEVVAAT---- 1460
Query: 123 PERIVISHARPRSLRVSW-APALGSAAALGYHVQFGPLRGGE-AQRVEVPAGRNCTTLQG 180
P SL +SW APA+ Y + +G G Q VP ++ T+ G
Sbjct: 1461 ----------PTSLLISWDAPAV---TVRYYRITYGETGGNSPVQEFTVPGSKSTATISG 1507
Query: 181 LAPGTAYLVTVTAAFRSGRESALS 204
L PG Y +TV A G A S
Sbjct: 1508 LKPGVDYTITVYAVTGRGDSPASS 1531
Score = 48.1 bits (113), Expect = 6e-06
Identities = 53/214 (24%), Positives = 78/214 (36%), Gaps = 31/214 (14%)
Query: 9 TEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLDPDTDYD 68
TEIT+S F ++W SG+ V E S + + LP AT L P Y
Sbjct: 729 TEITASSFVVSWVSASDTVSGFRV-EYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYI 787
Query: 69 VALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAGPERIVI 128
V + S GE S ++ A AP P ++ IV+
Sbjct: 788 VNVYQISE--------------DGEQSLILSTSQTTAPDAPPD----PTVDQVDDTSIVV 829
Query: 129 SHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLAPGTAYL 188
+RP+ A GY + + P G + + +P N TL L PG Y
Sbjct: 830 RWSRPQ------------APITGYRIVYSPSVEGSSTELNLPETANSVTLSDLQPGVQYN 877
Query: 189 VTVTAAFRSGRESALSAKACTPDGPRPRPRPVPR 222
+T+ A + + + + T PR P PR
Sbjct: 878 ITIYAVEENQESTPVVIQQETTGTPRSDTVPSPR 911
Score = 44.3 bits (103), Expect = 9e-05
Identities = 41/193 (21%), Positives = 71/193 (36%), Gaps = 33/193 (17%)
Query: 2 RPQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGL 61
+P Q+ T++ + + W P + +GY V P PG + + + T+ GL
Sbjct: 1544 KPSQMQVTDVQDNSISVKWLPSSSPVTGYRV-TTTPKNGPGPTKTKTAGPDQTEMTIEGL 1602
Query: 62 DPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEA 121
P +Y V++ ++ GE+ P L
Sbjct: 1603 QPTVEYVVSVYAQN--------------PSGESQP---------------LVQTAVTNID 1633
Query: 122 GPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTT-LQG 180
P+ + + S++++W G + Y V + G + P G T LQG
Sbjct: 1634 RPKGLAFTDVDVDSIKIAWESPQGQVSR--YRVTYSSPEDGIHELFPAPDGEEDTAELQG 1691
Query: 181 LAPGTAYLVTVTA 193
L PG+ Y V+V A
Sbjct: 1692 LRPGSEYTVSVVA 1704
Score = 42.7 bits (99), Expect = 3e-04
Identities = 49/217 (22%), Positives = 84/217 (38%), Gaps = 19/217 (8%)
Query: 3 PQQLHATEITS--SGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAG 60
P ++ TE S + + W + Y+L P G + +PG+ + G
Sbjct: 611 PVEVFITETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKG 670
Query: 61 LDPDTDYDVALVPESNVRLLRPQILRVR-TRPGEAGPGASGPESGAGPAPTQLAALPAPE 119
L P Y+ L+ S + ++ R T + P S +G T + L A
Sbjct: 671 LKPGVVYEGQLI--SIQQYGHQEVTRFDFTTTSTSTPVTSNTVTG---ETTPFSPLVATS 725
Query: 120 EAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFG-PLRGGEAQRVEVPAGRNCTTL 178
E+ ++ S VSW A S G+ V++ G E Q +++P+ +
Sbjct: 726 ES------VTEITASSFVVSWVSA--SDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNI 777
Query: 179 QGLAPGTAYLVTVTAAFRSGRESAL--SAKACTPDGP 213
L PG Y+V V G +S + +++ PD P
Sbjct: 778 PDLLPGRKYIVNVYQISEDGEQSLILSTSQTTAPDAP 814
Score = 41.6 bits (96), Expect = 6e-04
Identities = 41/210 (19%), Positives = 83/210 (39%), Gaps = 33/210 (15%)
Query: 3 PQQLHATEITSSG-FRLAWPPLLTAD-SGYYVLELVPSAQPGAARRQQLPGNATDWIWAG 60
P LH +G ++W T D +GY + + Q G + + + + + +
Sbjct: 1177 PTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDN 1236
Query: 61 LDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEE 120
L P +Y+V++ + + P + T + A+P P +
Sbjct: 1237 LSPGLEYNVSVYTVKDDKESVPI------------------------SDTIIPAVPPPTD 1272
Query: 121 AGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGE-AQRVEVPAGRNCTTLQ 179
+ ++ P ++RV+WAP S + V++ P++ E + + N L
Sbjct: 1273 -----LRFTNIGPDTMRVTWAPP-PSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLT 1326
Query: 180 GLAPGTAYLVTVTAAFRSGRESALSAKACT 209
L PGT Y+V+V++ + + L + T
Sbjct: 1327 NLLPGTEYVVSVSSVYEQHESTPLRGRQKT 1356
Score = 41.6 bits (96), Expect = 6e-04
Identities = 56/238 (23%), Positives = 87/238 (36%), Gaps = 42/238 (17%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P++ T+ T + ++W +G+ V + VP+ +R P + + GL
Sbjct: 1817 PRRARVTDATETTITISWRTKTETITGFQV-DAVPANGQTPIQRTIKP-DVRSYTITGLQ 1874
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
P TDY + L ++ P ++ T A AP+ L L
Sbjct: 1875 PGTDYKIYLYTLNDNARSSPVVIDAST---------------AIDAPSNLRFLATT---- 1915
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGR---NCTTLQ 179
P SL VSW P A GY +++ + G R VP R T+
Sbjct: 1916 ----------PNSLLVSWQPP--RARITGYIIKYE--KPGSPPREVVPRPRPGVTEATIT 1961
Query: 180 GLAPGTAYLVTVTAAFRSGRESALSAK----ACTPDGPRPRPRPVPRAPTPGTASREP 233
GL PGT Y + V A + + L + TP P PGT+ ++P
Sbjct: 1962 GLEPGTEYTIYVIALKNNQKSEPLIGRKKTVQKTPFVTHPGYDTGNGIQLPGTSGQQP 2019
Score = 40.4 bits (93), Expect = 0.001
Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 35/211 (16%)
Query: 3 PQQLHATEITSSGFRLAWP-PLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGL 61
P+ L T + ++W P +T YY + + + +PG+ + +GL
Sbjct: 1451 PRDLEVVAATPTSLLISWDAPAVTVR--YYRITYGETGGNSPVQEFTVPGSKSTATISGL 1508
Query: 62 DPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEA 121
P DY + + + G PA ++ ++ E
Sbjct: 1509 KPGVDYTITVYAVTG--------------------------RGDSPASSKPISINYRTEI 1542
Query: 122 G-PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCT--TL 178
P ++ ++ + S+ V W P+ S+ GY V P G + + AG + T T+
Sbjct: 1543 DKPSQMQVTDVQDNSISVKWLPS--SSPVTGYRVTTTPKNGPGPTKTKT-AGPDQTEMTI 1599
Query: 179 QGLAPGTAYLVTVTAAFRSGRESALSAKACT 209
+GL P Y+V+V A SG L A T
Sbjct: 1600 EGLQPTVEYVVSVYAQNPSGESQPLVQTAVT 1630
Score = 39.7 bits (91), Expect = 0.002
Identities = 67/275 (24%), Positives = 103/275 (37%), Gaps = 72/275 (26%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWI-WAGL 61
P+ L E+T + W P +A +GY V +++P PG Q+LP + + GL
Sbjct: 910 PRDLQFVEVTDVKVTIMWTPPESAVTGYRV-DVIPVNLPG-EHGQRLPISRNTFAEVTGL 967
Query: 62 DPDTDY----------------------------DVALVPESNVRLL------RPQILRV 87
P Y ++ V E++ +L R QI
Sbjct: 968 SPGVTYYFKVFAVSHGRESKPLTAQQTTKLDAPTNLQFVNETDSTVLVRWTPPRAQITGY 1027
Query: 88 R-----TRPGE-----AGPGASG-PESGAGPA---PTQLAALPAPEEAGPERIVISHARP 133
R TR G+ GP S P PA L A+ +E+ V + +P
Sbjct: 1028 RLTVGLTRRGQPRQYNVGPSVSKYPLRNLQPASEYTVSLVAIKGNQESPKATGVFTTLQP 1087
Query: 134 RS-------------LRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQG 180
S + ++W P A +G+ + P +GGEA R EV + + G
Sbjct: 1088 GSSIPPYNTEVTETTIVITWTP----APRIGFKLGVRPSQGGEAPR-EVTSDSGSIVVSG 1142
Query: 181 LAPGTAYLVTVTAAFRSG--RESALSAKACTPDGP 213
L PG Y+ T+ R G R++ + K TP P
Sbjct: 1143 LTPGVEYVYTI-QVLRDGQERDAPIVNKVVTPLSP 1176
Score = 39.3 bits (90), Expect = 0.003
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 123 PERIVISHARPRSLRVSW-APALGSAAALGYHVQFGPLR-GGEAQRVEVPAGRNCTTLQG 180
P I S S V W AP A GY ++ P G + VP RN TL
Sbjct: 1361 PTGIDFSDITANSFTVHWIAPR---ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTN 1417
Query: 181 LAPGTAYLVTVTAAFRSGRESA---LSAKACTPDGPR 214
L PGT Y+V++ A +GRE + + ++ D PR
Sbjct: 1418 LTPGTEYVVSIVAL--NGREESPLLIGQQSTVSDVPR 1452
Score = 37.0 bits (84), Expect = 0.014
Identities = 40/207 (19%), Positives = 71/207 (34%), Gaps = 30/207 (14%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P L T++T + W P +GY V + P + G + L +++ + +GL
Sbjct: 1725 PTDLKFTQVTPTSLSAQWTPPNVQLTGYRV-RVTPKEKTGPMKEINLAPDSSSVVVSGLM 1783
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
T Y+V++ + R P Q +
Sbjct: 1784 VATKYEVSVYALKDTLTSR---------------------------PAQGVVTTLENVSP 1816
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLA 182
P R ++ A ++ +SW + G+ V P G + + T+ GL
Sbjct: 1817 PRRARVTDATETTITISWRTK--TETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQ 1874
Query: 183 PGTAYLVTVTAAFRSGRESALSAKACT 209
PGT Y + + + R S + A T
Sbjct: 1875 PGTDYKIYLYTLNDNARSSPVVIDAST 1901
Score = 35.4 bits (80), Expect = 0.042
Identities = 43/203 (21%), Positives = 72/203 (35%), Gaps = 31/203 (15%)
Query: 10 EITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLDPDTDYDV 69
++ + + W +GY ++ PS + G++ LP A + L P Y++
Sbjct: 821 QVDDTSIVVRWSRPQAPITGYRIV-YSPSVE-GSSTELNLPETANSVTLSDLQPGVQYNI 878
Query: 70 ALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAGPERIVIS 129
+ + P +++ T P S P+P L + +
Sbjct: 879 TIYAVEENQESTPVVIQQET--------TGTPRSDTVPSPRDLQFVEVTDV--------- 921
Query: 130 HARPRSLRVSWAPALGSAAALGYHVQFGP--LRGGEAQRVEVPAGRNC-TTLQGLAPGTA 186
+ + W P +A GY V P L G QR+ P RN + GL+PG
Sbjct: 922 -----KVTIMWTPP--ESAVTGYRVDVIPVNLPGEHGQRL--PISRNTFAEVTGLSPGVT 972
Query: 187 YLVTVTAAFRSGRESALSAKACT 209
Y V A L+A+ T
Sbjct: 973 YYFKVFAVSHGRESKPLTAQQTT 995
>gi|47132553 fibronectin 1 isoform 5 preproprotein [Homo sapiens]
Length = 2296
Score = 50.1 bits (118), Expect = 2e-06
Identities = 50/204 (24%), Positives = 75/204 (36%), Gaps = 35/204 (17%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P + ++IT++ F + W +GY + P G R ++P + L
Sbjct: 1361 PTGIDFSDITANSFTVHWIAPRATITGYRIRHH-PEHFSGRPREDRVPHSRNSITLTNLT 1419
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
P T+Y V++V + E P G +S P L + A
Sbjct: 1420 PGTEYVVSIVALNG---------------REESPLLIGQQSTVSDVPRDLEVVAAT---- 1460
Query: 123 PERIVISHARPRSLRVSW-APALGSAAALGYHVQFGPLRGGE-AQRVEVPAGRNCTTLQG 180
P SL +SW APA+ Y + +G G Q VP ++ T+ G
Sbjct: 1461 ----------PTSLLISWDAPAV---TVRYYRITYGETGGNSPVQEFTVPGSKSTATISG 1507
Query: 181 LAPGTAYLVTVTAAFRSGRESALS 204
L PG Y +TV A G A S
Sbjct: 1508 LKPGVDYTITVYAVTGRGDSPASS 1531
Score = 48.1 bits (113), Expect = 6e-06
Identities = 53/214 (24%), Positives = 78/214 (36%), Gaps = 31/214 (14%)
Query: 9 TEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLDPDTDYD 68
TEIT+S F ++W SG+ V E S + + LP AT L P Y
Sbjct: 729 TEITASSFVVSWVSASDTVSGFRV-EYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYI 787
Query: 69 VALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAGPERIVI 128
V + S GE S ++ A AP P ++ IV+
Sbjct: 788 VNVYQISE--------------DGEQSLILSTSQTTAPDAPPD----PTVDQVDDTSIVV 829
Query: 129 SHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLAPGTAYL 188
+RP+ A GY + + P G + + +P N TL L PG Y
Sbjct: 830 RWSRPQ------------APITGYRIVYSPSVEGSSTELNLPETANSVTLSDLQPGVQYN 877
Query: 189 VTVTAAFRSGRESALSAKACTPDGPRPRPRPVPR 222
+T+ A + + + + T PR P PR
Sbjct: 878 ITIYAVEENQESTPVVIQQETTGTPRSDTVPSPR 911
Score = 45.1 bits (105), Expect = 5e-05
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 33/193 (17%)
Query: 2 RPQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGL 61
+P Q+ T++ + + W P + +GY V P PG + + + T+ GL
Sbjct: 1544 KPSQMQVTDVQDNSISVKWLPSSSPVTGYRV-TTTPKNGPGPTKTKTAGPDQTEMTIEGL 1602
Query: 62 DPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEA 121
P +Y V++ ++ GE+ P T + +PAP +
Sbjct: 1603 QPTVEYVVSVYAQN--------------PSGESQP----------LVQTAVTTIPAPTD- 1637
Query: 122 GPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPL-RGGEAQRVEVPAGRNCTTLQG 180
+ + P SL W P + GY V+ P + G + + + + + G
Sbjct: 1638 ----LKFTQVTPTSLSAQWTPP--NVQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSG 1691
Query: 181 LAPGTAYLVTVTA 193
L T Y V+V A
Sbjct: 1692 LMVATKYEVSVYA 1704
Score = 43.9 bits (102), Expect = 1e-04
Identities = 54/227 (23%), Positives = 84/227 (37%), Gaps = 38/227 (16%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P++ T+ T + ++W +G+ V + VP+ +R P + + GL
Sbjct: 1727 PRRARVTDATETTITISWRTKTETITGFQV-DAVPANGQTPIQRTIKP-DVRSYTITGLQ 1784
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
P TDY + L ++ P ++ T A AP+ L L
Sbjct: 1785 PGTDYKIYLYTLNDNARSSPVVIDAST---------------AIDAPSNLRFLATT---- 1825
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGR---NCTTLQ 179
P SL VSW P A GY +++ + G R VP R T+
Sbjct: 1826 ----------PNSLLVSWQPP--RARITGYIIKYE--KPGSPPREVVPRPRPGVTEATIT 1871
Query: 180 GLAPGTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPRPVPRAPTP 226
GL PGT Y + V A + + L + T + P+ P P P
Sbjct: 1872 GLEPGTEYTIYVIALKNNQKSEPLIGRKKTDELPQLVTLPHPNLHGP 1918
Score = 42.7 bits (99), Expect = 3e-04
Identities = 49/217 (22%), Positives = 84/217 (38%), Gaps = 19/217 (8%)
Query: 3 PQQLHATEITS--SGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAG 60
P ++ TE S + + W + Y+L P G + +PG+ + G
Sbjct: 611 PVEVFITETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKG 670
Query: 61 LDPDTDYDVALVPESNVRLLRPQILRVR-TRPGEAGPGASGPESGAGPAPTQLAALPAPE 119
L P Y+ L+ S + ++ R T + P S +G T + L A
Sbjct: 671 LKPGVVYEGQLI--SIQQYGHQEVTRFDFTTTSTSTPVTSNTVTG---ETTPFSPLVATS 725
Query: 120 EAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFG-PLRGGEAQRVEVPAGRNCTTL 178
E+ ++ S VSW A S G+ V++ G E Q +++P+ +
Sbjct: 726 ES------VTEITASSFVVSWVSA--SDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNI 777
Query: 179 QGLAPGTAYLVTVTAAFRSGRESAL--SAKACTPDGP 213
L PG Y+V V G +S + +++ PD P
Sbjct: 778 PDLLPGRKYIVNVYQISEDGEQSLILSTSQTTAPDAP 814
Score = 41.6 bits (96), Expect = 6e-04
Identities = 41/210 (19%), Positives = 83/210 (39%), Gaps = 33/210 (15%)
Query: 3 PQQLHATEITSSG-FRLAWPPLLTAD-SGYYVLELVPSAQPGAARRQQLPGNATDWIWAG 60
P LH +G ++W T D +GY + + Q G + + + + + +
Sbjct: 1177 PTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDN 1236
Query: 61 LDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEE 120
L P +Y+V++ + + P + T + A+P P +
Sbjct: 1237 LSPGLEYNVSVYTVKDDKESVPI------------------------SDTIIPAVPPPTD 1272
Query: 121 AGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGE-AQRVEVPAGRNCTTLQ 179
+ ++ P ++RV+WAP S + V++ P++ E + + N L
Sbjct: 1273 -----LRFTNIGPDTMRVTWAPP-PSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLT 1326
Query: 180 GLAPGTAYLVTVTAAFRSGRESALSAKACT 209
L PGT Y+V+V++ + + L + T
Sbjct: 1327 NLLPGTEYVVSVSSVYEQHESTPLRGRQKT 1356
Score = 40.4 bits (93), Expect = 0.001
Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 35/211 (16%)
Query: 3 PQQLHATEITSSGFRLAWP-PLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGL 61
P+ L T + ++W P +T YY + + + +PG+ + +GL
Sbjct: 1451 PRDLEVVAATPTSLLISWDAPAVTVR--YYRITYGETGGNSPVQEFTVPGSKSTATISGL 1508
Query: 62 DPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEA 121
P DY + + + G PA ++ ++ E
Sbjct: 1509 KPGVDYTITVYAVTG--------------------------RGDSPASSKPISINYRTEI 1542
Query: 122 G-PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCT--TL 178
P ++ ++ + S+ V W P+ S+ GY V P G + + AG + T T+
Sbjct: 1543 DKPSQMQVTDVQDNSISVKWLPS--SSPVTGYRVTTTPKNGPGPTKTKT-AGPDQTEMTI 1599
Query: 179 QGLAPGTAYLVTVTAAFRSGRESALSAKACT 209
+GL P Y+V+V A SG L A T
Sbjct: 1600 EGLQPTVEYVVSVYAQNPSGESQPLVQTAVT 1630
Score = 39.7 bits (91), Expect = 0.002
Identities = 67/275 (24%), Positives = 103/275 (37%), Gaps = 72/275 (26%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWI-WAGL 61
P+ L E+T + W P +A +GY V +++P PG Q+LP + + GL
Sbjct: 910 PRDLQFVEVTDVKVTIMWTPPESAVTGYRV-DVIPVNLPG-EHGQRLPISRNTFAEVTGL 967
Query: 62 DPDTDY----------------------------DVALVPESNVRLL------RPQILRV 87
P Y ++ V E++ +L R QI
Sbjct: 968 SPGVTYYFKVFAVSHGRESKPLTAQQTTKLDAPTNLQFVNETDSTVLVRWTPPRAQITGY 1027
Query: 88 R-----TRPGE-----AGPGASG-PESGAGPA---PTQLAALPAPEEAGPERIVISHARP 133
R TR G+ GP S P PA L A+ +E+ V + +P
Sbjct: 1028 RLTVGLTRRGQPRQYNVGPSVSKYPLRNLQPASEYTVSLVAIKGNQESPKATGVFTTLQP 1087
Query: 134 RS-------------LRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQG 180
S + ++W P A +G+ + P +GGEA R EV + + G
Sbjct: 1088 GSSIPPYNTEVTETTIVITWTP----APRIGFKLGVRPSQGGEAPR-EVTSDSGSIVVSG 1142
Query: 181 LAPGTAYLVTVTAAFRSG--RESALSAKACTPDGP 213
L PG Y+ T+ R G R++ + K TP P
Sbjct: 1143 LTPGVEYVYTI-QVLRDGQERDAPIVNKVVTPLSP 1176
Score = 39.3 bits (90), Expect = 0.003
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 123 PERIVISHARPRSLRVSW-APALGSAAALGYHVQFGPLR-GGEAQRVEVPAGRNCTTLQG 180
P I S S V W AP A GY ++ P G + VP RN TL
Sbjct: 1361 PTGIDFSDITANSFTVHWIAPR---ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTN 1417
Query: 181 LAPGTAYLVTVTAAFRSGRESA---LSAKACTPDGPR 214
L PGT Y+V++ A +GRE + + ++ D PR
Sbjct: 1418 LTPGTEYVVSIVAL--NGREESPLLIGQQSTVSDVPR 1452
Score = 37.0 bits (84), Expect = 0.014
Identities = 40/207 (19%), Positives = 71/207 (34%), Gaps = 30/207 (14%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P L T++T + W P +GY V + P + G + L +++ + +GL
Sbjct: 1635 PTDLKFTQVTPTSLSAQWTPPNVQLTGYRV-RVTPKEKTGPMKEINLAPDSSSVVVSGLM 1693
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
T Y+V++ + R P Q +
Sbjct: 1694 VATKYEVSVYALKDTLTSR---------------------------PAQGVVTTLENVSP 1726
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLA 182
P R ++ A ++ +SW + G+ V P G + + T+ GL
Sbjct: 1727 PRRARVTDATETTITISWRTK--TETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQ 1784
Query: 183 PGTAYLVTVTAAFRSGRESALSAKACT 209
PGT Y + + + R S + A T
Sbjct: 1785 PGTDYKIYLYTLNDNARSSPVVIDAST 1811
Score = 35.4 bits (80), Expect = 0.042
Identities = 43/203 (21%), Positives = 72/203 (35%), Gaps = 31/203 (15%)
Query: 10 EITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLDPDTDYDV 69
++ + + W +GY ++ PS + G++ LP A + L P Y++
Sbjct: 821 QVDDTSIVVRWSRPQAPITGYRIV-YSPSVE-GSSTELNLPETANSVTLSDLQPGVQYNI 878
Query: 70 ALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAGPERIVIS 129
+ + P +++ T P S P+P L + +
Sbjct: 879 TIYAVEENQESTPVVIQQET--------TGTPRSDTVPSPRDLQFVEVTDV--------- 921
Query: 130 HARPRSLRVSWAPALGSAAALGYHVQFGP--LRGGEAQRVEVPAGRNC-TTLQGLAPGTA 186
+ + W P +A GY V P L G QR+ P RN + GL+PG
Sbjct: 922 -----KVTIMWTPP--ESAVTGYRVDVIPVNLPGEHGQRL--PISRNTFAEVTGLSPGVT 972
Query: 187 YLVTVTAAFRSGRESALSAKACT 209
Y V A L+A+ T
Sbjct: 973 YYFKVFAVSHGRESKPLTAQQTT 995
>gi|47132549 fibronectin 1 isoform 6 preproprotein [Homo sapiens]
Length = 2176
Score = 50.1 bits (118), Expect = 2e-06
Identities = 50/204 (24%), Positives = 75/204 (36%), Gaps = 35/204 (17%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P + ++IT++ F + W +GY + P G R ++P + L
Sbjct: 1361 PTGIDFSDITANSFTVHWIAPRATITGYRIRHH-PEHFSGRPREDRVPHSRNSITLTNLT 1419
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
P T+Y V++V + E P G +S P L + A
Sbjct: 1420 PGTEYVVSIVALNG---------------REESPLLIGQQSTVSDVPRDLEVVAAT---- 1460
Query: 123 PERIVISHARPRSLRVSW-APALGSAAALGYHVQFGPLRGGE-AQRVEVPAGRNCTTLQG 180
P SL +SW APA+ Y + +G G Q VP ++ T+ G
Sbjct: 1461 ----------PTSLLISWDAPAV---TVRYYRITYGETGGNSPVQEFTVPGSKSTATISG 1507
Query: 181 LAPGTAYLVTVTAAFRSGRESALS 204
L PG Y +TV A G A S
Sbjct: 1508 LKPGVDYTITVYAVTGRGDSPASS 1531
Score = 48.1 bits (113), Expect = 6e-06
Identities = 53/214 (24%), Positives = 78/214 (36%), Gaps = 31/214 (14%)
Query: 9 TEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLDPDTDYD 68
TEIT+S F ++W SG+ V E S + + LP AT L P Y
Sbjct: 729 TEITASSFVVSWVSASDTVSGFRV-EYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYI 787
Query: 69 VALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAGPERIVI 128
V + S GE S ++ A AP P ++ IV+
Sbjct: 788 VNVYQISE--------------DGEQSLILSTSQTTAPDAPPD----PTVDQVDDTSIVV 829
Query: 129 SHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLAPGTAYL 188
+RP+ A GY + + P G + + +P N TL L PG Y
Sbjct: 830 RWSRPQ------------APITGYRIVYSPSVEGSSTELNLPETANSVTLSDLQPGVQYN 877
Query: 189 VTVTAAFRSGRESALSAKACTPDGPRPRPRPVPR 222
+T+ A + + + + T PR P PR
Sbjct: 878 ITIYAVEENQESTPVVIQQETTGTPRSDTVPSPR 911
Score = 45.1 bits (105), Expect = 5e-05
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 33/193 (17%)
Query: 2 RPQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGL 61
+P Q+ T++ + + W P + +GY V P PG + + + T+ GL
Sbjct: 1544 KPSQMQVTDVQDNSISVKWLPSSSPVTGYRV-TTTPKNGPGPTKTKTAGPDQTEMTIEGL 1602
Query: 62 DPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEA 121
P +Y V++ ++ GE+ P T + +PAP +
Sbjct: 1603 QPTVEYVVSVYAQN--------------PSGESQP----------LVQTAVTTIPAPTD- 1637
Query: 122 GPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPL-RGGEAQRVEVPAGRNCTTLQG 180
+ + P SL W P + GY V+ P + G + + + + + G
Sbjct: 1638 ----LKFTQVTPTSLSAQWTPP--NVQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSG 1691
Query: 181 LAPGTAYLVTVTA 193
L T Y V+V A
Sbjct: 1692 LMVATKYEVSVYA 1704
Score = 42.7 bits (99), Expect = 3e-04
Identities = 49/217 (22%), Positives = 84/217 (38%), Gaps = 19/217 (8%)
Query: 3 PQQLHATEITS--SGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAG 60
P ++ TE S + + W + Y+L P G + +PG+ + G
Sbjct: 611 PVEVFITETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKG 670
Query: 61 LDPDTDYDVALVPESNVRLLRPQILRVR-TRPGEAGPGASGPESGAGPAPTQLAALPAPE 119
L P Y+ L+ S + ++ R T + P S +G T + L A
Sbjct: 671 LKPGVVYEGQLI--SIQQYGHQEVTRFDFTTTSTSTPVTSNTVTG---ETTPFSPLVATS 725
Query: 120 EAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFG-PLRGGEAQRVEVPAGRNCTTL 178
E+ ++ S VSW A S G+ V++ G E Q +++P+ +
Sbjct: 726 ES------VTEITASSFVVSWVSA--SDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNI 777
Query: 179 QGLAPGTAYLVTVTAAFRSGRESAL--SAKACTPDGP 213
L PG Y+V V G +S + +++ PD P
Sbjct: 778 PDLLPGRKYIVNVYQISEDGEQSLILSTSQTTAPDAP 814
Score = 41.6 bits (96), Expect = 6e-04
Identities = 41/210 (19%), Positives = 83/210 (39%), Gaps = 33/210 (15%)
Query: 3 PQQLHATEITSSG-FRLAWPPLLTAD-SGYYVLELVPSAQPGAARRQQLPGNATDWIWAG 60
P LH +G ++W T D +GY + + Q G + + + + + +
Sbjct: 1177 PTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDN 1236
Query: 61 LDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEE 120
L P +Y+V++ + + P + T + A+P P +
Sbjct: 1237 LSPGLEYNVSVYTVKDDKESVPI------------------------SDTIIPAVPPPTD 1272
Query: 121 AGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGE-AQRVEVPAGRNCTTLQ 179
+ ++ P ++RV+WAP S + V++ P++ E + + N L
Sbjct: 1273 -----LRFTNIGPDTMRVTWAPP-PSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLT 1326
Query: 180 GLAPGTAYLVTVTAAFRSGRESALSAKACT 209
L PGT Y+V+V++ + + L + T
Sbjct: 1327 NLLPGTEYVVSVSSVYEQHESTPLRGRQKT 1356
Score = 40.4 bits (93), Expect = 0.001
Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 35/211 (16%)
Query: 3 PQQLHATEITSSGFRLAWP-PLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGL 61
P+ L T + ++W P +T YY + + + +PG+ + +GL
Sbjct: 1451 PRDLEVVAATPTSLLISWDAPAVTVR--YYRITYGETGGNSPVQEFTVPGSKSTATISGL 1508
Query: 62 DPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEA 121
P DY + + + G PA ++ ++ E
Sbjct: 1509 KPGVDYTITVYAVTG--------------------------RGDSPASSKPISINYRTEI 1542
Query: 122 G-PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCT--TL 178
P ++ ++ + S+ V W P+ S+ GY V P G + + AG + T T+
Sbjct: 1543 DKPSQMQVTDVQDNSISVKWLPS--SSPVTGYRVTTTPKNGPGPTKTKT-AGPDQTEMTI 1599
Query: 179 QGLAPGTAYLVTVTAAFRSGRESALSAKACT 209
+GL P Y+V+V A SG L A T
Sbjct: 1600 EGLQPTVEYVVSVYAQNPSGESQPLVQTAVT 1630
Score = 40.4 bits (93), Expect = 0.001
Identities = 50/210 (23%), Positives = 78/210 (37%), Gaps = 38/210 (18%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P++ T+ T + ++W +G+ V + VP+ +R P + + GL
Sbjct: 1727 PRRARVTDATETTITISWRTKTETITGFQV-DAVPANGQTPIQRTIKP-DVRSYTITGLQ 1784
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
P TDY + L ++ P ++ T A AP+ L L
Sbjct: 1785 PGTDYKIYLYTLNDNARSSPVVIDAST---------------AIDAPSNLRFLATT---- 1825
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGR---NCTTLQ 179
P SL VSW P A GY +++ + G R VP R T+
Sbjct: 1826 ----------PNSLLVSWQPP--RARITGYIIKYE--KPGSPPREVVPRPRPGVTEATIT 1871
Query: 180 GLAPGTAYLVTVTAAFRSGRESALSAKACT 209
GL PGT Y + V A + + L + T
Sbjct: 1872 GLEPGTEYTIYVIALKNNQKSEPLIGRKKT 1901
Score = 39.7 bits (91), Expect = 0.002
Identities = 67/275 (24%), Positives = 103/275 (37%), Gaps = 72/275 (26%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWI-WAGL 61
P+ L E+T + W P +A +GY V +++P PG Q+LP + + GL
Sbjct: 910 PRDLQFVEVTDVKVTIMWTPPESAVTGYRV-DVIPVNLPG-EHGQRLPISRNTFAEVTGL 967
Query: 62 DPDTDY----------------------------DVALVPESNVRLL------RPQILRV 87
P Y ++ V E++ +L R QI
Sbjct: 968 SPGVTYYFKVFAVSHGRESKPLTAQQTTKLDAPTNLQFVNETDSTVLVRWTPPRAQITGY 1027
Query: 88 R-----TRPGE-----AGPGASG-PESGAGPA---PTQLAALPAPEEAGPERIVISHARP 133
R TR G+ GP S P PA L A+ +E+ V + +P
Sbjct: 1028 RLTVGLTRRGQPRQYNVGPSVSKYPLRNLQPASEYTVSLVAIKGNQESPKATGVFTTLQP 1087
Query: 134 RS-------------LRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQG 180
S + ++W P A +G+ + P +GGEA R EV + + G
Sbjct: 1088 GSSIPPYNTEVTETTIVITWTP----APRIGFKLGVRPSQGGEAPR-EVTSDSGSIVVSG 1142
Query: 181 LAPGTAYLVTVTAAFRSG--RESALSAKACTPDGP 213
L PG Y+ T+ R G R++ + K TP P
Sbjct: 1143 LTPGVEYVYTI-QVLRDGQERDAPIVNKVVTPLSP 1176
Score = 39.3 bits (90), Expect = 0.003
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 123 PERIVISHARPRSLRVSW-APALGSAAALGYHVQFGPLR-GGEAQRVEVPAGRNCTTLQG 180
P I S S V W AP A GY ++ P G + VP RN TL
Sbjct: 1361 PTGIDFSDITANSFTVHWIAPR---ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTN 1417
Query: 181 LAPGTAYLVTVTAAFRSGRESA---LSAKACTPDGPR 214
L PGT Y+V++ A +GRE + + ++ D PR
Sbjct: 1418 LTPGTEYVVSIVAL--NGREESPLLIGQQSTVSDVPR 1452
Score = 37.0 bits (84), Expect = 0.014
Identities = 40/207 (19%), Positives = 71/207 (34%), Gaps = 30/207 (14%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P L T++T + W P +GY V + P + G + L +++ + +GL
Sbjct: 1635 PTDLKFTQVTPTSLSAQWTPPNVQLTGYRV-RVTPKEKTGPMKEINLAPDSSSVVVSGLM 1693
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
T Y+V++ + R P Q +
Sbjct: 1694 VATKYEVSVYALKDTLTSR---------------------------PAQGVVTTLENVSP 1726
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLA 182
P R ++ A ++ +SW + G+ V P G + + T+ GL
Sbjct: 1727 PRRARVTDATETTITISWRTK--TETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQ 1784
Query: 183 PGTAYLVTVTAAFRSGRESALSAKACT 209
PGT Y + + + R S + A T
Sbjct: 1785 PGTDYKIYLYTLNDNARSSPVVIDAST 1811
Score = 35.4 bits (80), Expect = 0.042
Identities = 43/203 (21%), Positives = 72/203 (35%), Gaps = 31/203 (15%)
Query: 10 EITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLDPDTDYDV 69
++ + + W +GY ++ PS + G++ LP A + L P Y++
Sbjct: 821 QVDDTSIVVRWSRPQAPITGYRIV-YSPSVE-GSSTELNLPETANSVTLSDLQPGVQYNI 878
Query: 70 ALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAGPERIVIS 129
+ + P +++ T P S P+P L + +
Sbjct: 879 TIYAVEENQESTPVVIQQET--------TGTPRSDTVPSPRDLQFVEVTDV--------- 921
Query: 130 HARPRSLRVSWAPALGSAAALGYHVQFGP--LRGGEAQRVEVPAGRNC-TTLQGLAPGTA 186
+ + W P +A GY V P L G QR+ P RN + GL+PG
Sbjct: 922 -----KVTIMWTPP--ESAVTGYRVDVIPVNLPGEHGQRL--PISRNTFAEVTGLSPGVT 972
Query: 187 YLVTVTAAFRSGRESALSAKACT 209
Y V A L+A+ T
Sbjct: 973 YYFKVFAVSHGRESKPLTAQQTT 995
>gi|153946395 tenascin C precursor [Homo sapiens]
Length = 2201
Score = 50.1 bits (118), Expect = 2e-06
Identities = 50/212 (23%), Positives = 78/212 (36%), Gaps = 34/212 (16%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P+ L +E + L W L Y + +P+ Q QLP N T ++ GL+
Sbjct: 988 PKDLQVSETAETSLTLLWKTPLAKFDRYRLNYSLPTGQWVGV---QLPRNTTSYVLRGLE 1044
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
P +Y+V L E +P ++ T APE
Sbjct: 1045 PGQEYNVLLTAEKGRHKSKPARVKASTE-------------------------QAPE--- 1076
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQR-VEVPAGRNCTTLQGL 181
E + ++ LR++W A A + +Q EA R + VP + GL
Sbjct: 1077 LENLTVTEVGWDGLRLNWTAA--DQAYEHFIIQVQEANKVEAARNLTVPGSLRAVDIPGL 1134
Query: 182 APGTAYLVTVTAAFRSGRESALSAKACTPDGP 213
T Y V++ + R LSA+A T + P
Sbjct: 1135 KAATPYTVSIYGVIQGYRTPVLSAEASTGETP 1166
Score = 49.3 bits (116), Expect = 3e-06
Identities = 52/213 (24%), Positives = 80/213 (37%), Gaps = 41/213 (19%)
Query: 3 PQQLHATEITSSGFRLAW-PPLLTADSGYYVLELVPSAQ--PGAARRQQLPGNATDWIWA 59
P Q+ ++T + + W PL D +EL + PG L + +
Sbjct: 806 PSQIEVKDVTDTTALITWFKPLAEIDG----IELTYGIKDVPGDRTTIDLTEDENQYSIG 861
Query: 60 GLDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPE 119
L PDT+Y+V+L+ G +S P T L AP
Sbjct: 862 NLKPDTEYEVSLI-------------------SRRGDMSSNPAK-----ETFTTGLDAPR 897
Query: 120 EAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNC---T 176
R+ S+ + W G AA Y +++ P+ GG+ V+VP + T
Sbjct: 898 NL--RRV---SQTDNSITLEWRN--GKAAIDSYRIKYAPISGGDHAEVDVPKSQQATTKT 950
Query: 177 TLQGLAPGTAYLVTVTAAFRSGRESALSAKACT 209
TL GL PGT Y + V+A + + A T
Sbjct: 951 TLTGLRPGTEYGIGVSAVKEDKESNPATINAAT 983
Score = 42.4 bits (98), Expect = 3e-04
Identities = 48/212 (22%), Positives = 79/212 (37%), Gaps = 34/212 (16%)
Query: 4 QQLHATEITSSGFRLAWPPLLTADSGY--YVLELVPSAQPGAARRQQLPGNATDWIWAGL 61
+ L TE+ G RL W AD Y +++++ + + AAR +PG+ GL
Sbjct: 1078 ENLTVTEVGWDGLRLNWT---AADQAYEHFIIQVQEANKVEAARNLTVPGSLRAVDIPGL 1134
Query: 62 DPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEA 121
T Y V++ ++ R +L GE P G
Sbjct: 1135 KAATPYTVSIY--GVIQGYRTPVLSAEASTGET------PNLG----------------- 1169
Query: 122 GPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGL 181
+V++ +L+++W G+ VQ AQ + VP G T L GL
Sbjct: 1170 ---EVVVAEVGWDALKLNWTAPEGAYEYFFIQVQEADTVEA-AQNLTVPGGLRSTDLPGL 1225
Query: 182 APGTAYLVTVTAAFRSGRESALSAKACTPDGP 213
T Y +T+ + + LS + T + P
Sbjct: 1226 KAATHYTITIRGVTQDFSTTPLSVEVLTEEVP 1257
Score = 42.0 bits (97), Expect = 5e-04
Identities = 52/213 (24%), Positives = 79/213 (37%), Gaps = 41/213 (19%)
Query: 6 LHATEITSSGFRLAWPPLLTADSGYY---VLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
L ++ T GFRL+W TAD G + VL++ + + L GL
Sbjct: 1626 LLVSDATPDGFRLSW----TADEGVFDNFVLKIRDTKKQSEPLEITLLAPERTRDITGLR 1681
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
T+Y++ L S R R +T ++A+
Sbjct: 1682 EATEYEIELYGISKGR-------RSQT----------------------VSAIATTAMGS 1712
Query: 123 PERIVISHARPRSLRVSW-APALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGL 181
P+ ++ S S VSW AP +A + + + P+ GG V V + T L L
Sbjct: 1713 PKEVIFSDITENSATVSWRAP---TAQVESFRITYVPITGGTPSMVTVDGTKTQTRLVKL 1769
Query: 182 APGTAYLVTVTAAFRSGRESALSAKACTP-DGP 213
PG YLV++ A +S T DGP
Sbjct: 1770 IPGVEYLVSIIAMKGFEESEPVSGSFTTALDGP 1802
Score = 37.4 bits (85), Expect = 0.011
Identities = 50/211 (23%), Positives = 74/211 (35%), Gaps = 36/211 (17%)
Query: 6 LHATEITSSGFRLAWPPLLTADSGY--YVLELVPSAQPGAARRQQLPGNATDWIWAGLDP 63
L TE++ RL W T D Y + +++ + Q A +PG+ GL
Sbjct: 1262 LTVTEVSWDALRLNWT---TPDGTYDQFTIQVQEADQVEEAHNLTVPGSLRSMEIPGLRA 1318
Query: 64 DTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAGP 123
T Y V L E RP + V T P+ G
Sbjct: 1319 GTPYTVTLHGEVRGHSTRPLAVEVVTE--------DLPQLGD------------------ 1352
Query: 124 ERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEA-QRVEVPAGRNCTTLQGLA 182
+ +S LR++W A A + +Q + EA Q + +P + GL
Sbjct: 1353 --LAVSEVGWDGLRLNWTAA--DNAYEHFVIQVQEVNKVEAAQNLTLPGSLRAVDIPGLE 1408
Query: 183 PGTAYLVTVTAAFRSGRESALSAKACTPDGP 213
T Y V++ R R LSA+A T P
Sbjct: 1409 AATPYRVSIYGVIRGYRTPVLSAEASTAKEP 1439
Score = 35.8 bits (81), Expect = 0.032
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 119 EEAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLR-GGEAQRVEVPAGRNCTT 177
E + P+ +V++ ++ ++W + Y V + P GG + VP + T
Sbjct: 622 EVSPPKDLVVTEVTEETVNLAWDNEM---RVTEYLVVYTPTHEGGLEMQFRVPGDQTSTI 678
Query: 178 LQGLAPGTAYLVTVTAAFRSGRESALSAKACT 209
+Q L PG Y + V A + + +SA+ T
Sbjct: 679 IQELEPGVEYFIRVFAILENKKSIPVSARVAT 710
Score = 33.1 bits (74), Expect = 0.21
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P+ L TE+T LAW + Y++ P+ + G + ++PG+ T I L+
Sbjct: 626 PKDLVVTEVTEETVNLAWDNEMRVTE--YLVVYTPTHEGGLEMQFRVPGDQTSTIIQELE 683
Query: 63 PDTDY 67
P +Y
Sbjct: 684 PGVEY 688
Score = 31.2 bits (69), Expect = 0.79
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 135 SLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLAPGTAYLVTVTAA 194
+LR++W G+ VQ + EA + VP + GL GT Y VT+
Sbjct: 1271 ALRLNWTTPDGTYDQFTIQVQEAD-QVEEAHNLTVPGSLRSMEIPGLRAGTPYTVTLHGE 1329
Query: 195 FRSGRESALSAKACTPDGPR 214
R L+ + T D P+
Sbjct: 1330 VRGHSTRPLAVEVVTEDLPQ 1349
Score = 30.8 bits (68), Expect = 1.0
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P+ L ATE+ S L W P + +GY LV + G + + + T + A L
Sbjct: 1890 PRDLTATEVQSETALLTWRPPRASVTGYL---LVYESVDGTVKEVIVGPDTTSYSLADLS 1946
Query: 63 PDTDY 67
P T Y
Sbjct: 1947 PSTHY 1951
>gi|54607027 integrin beta 4 isoform 2 precursor [Homo sapiens]
Length = 1805
Score = 48.9 bits (115), Expect = 4e-06
Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 14/146 (9%)
Query: 91 PGEAGPGASGPESGAGPAPT--QLAALPAPEEAGPERIVISHARPRSLRVSWAPALGSAA 148
P GP S +G AP+ + L A P R+V S P SLRVSW
Sbjct: 1480 PPSRGPRDSIILAGRPAAPSWGPDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCERP 1539
Query: 149 ALGYHVQFGPLRGGEAQRVEVP-AGRNCTTLQGLAPGTAYLVTVTAAFRSG----RESAL 203
GY V++ L GGE R+ +P + ++ L P +Y+ V A + G RE +
Sbjct: 1540 LQGYSVEYQLLNGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVI 1599
Query: 204 SAKACTPDGPRPRPRPVPRAPTPGTA 229
+ ++ + P+ P P PG+A
Sbjct: 1600 TIES------QVHPQS-PLCPLPGSA 1618
>gi|54607035 integrin beta 4 isoform 1 precursor [Homo sapiens]
Length = 1822
Score = 48.1 bits (113), Expect = 6e-06
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 12/112 (10%)
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVP-AGRNCTTLQGL 181
P R+V S P SLRVSW GY V++ L GGE R+ +P + ++ L
Sbjct: 1531 PTRLVFSALGPTSLRVSWQEPRCERPLQGYSVEYQLLNGGELHRLNIPNPAQTSVVVEDL 1590
Query: 182 APGTAYLVTVTAAFRSG----RESALSAKACTPDGPRPRPRPVPRAPTPGTA 229
P +Y+ V A + G RE ++ ++ + P+ P P PG+A
Sbjct: 1591 LPNHSYVFRVRAQSQEGWGREREGVITIES------QVHPQS-PLCPLPGSA 1635
>gi|54607033 integrin beta 4 isoform 3 precursor [Homo sapiens]
Length = 1752
Score = 48.1 bits (113), Expect = 6e-06
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 12/112 (10%)
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVP-AGRNCTTLQGL 181
P R+V S P SLRVSW GY V++ L GGE R+ +P + ++ L
Sbjct: 1461 PTRLVFSALGPTSLRVSWQEPRCERPLQGYSVEYQLLNGGELHRLNIPNPAQTSVVVEDL 1520
Query: 182 APGTAYLVTVTAAFRSG----RESALSAKACTPDGPRPRPRPVPRAPTPGTA 229
P +Y+ V A + G RE ++ ++ + P+ P P PG+A
Sbjct: 1521 LPNHSYVFRVRAQSQEGWGREREGVITIES------QVHPQS-PLCPLPGSA 1565
>gi|157384973 tenascin R [Homo sapiens]
Length = 1358
Score = 43.9 bits (102), Expect = 1e-04
Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 8/126 (6%)
Query: 91 PG-EAGPGASGPESGAGPAPTQLAALPAPEEAGPERIVISHARPRSLRVSWAPALGSAAA 149
PG E G G S + P + A E P ++++ + S+ + W A G
Sbjct: 658 PGTEYGVGISAVMNSQQSVPATMNA--RTELDSPRDLMVTASSETSISLIWTKASGPIDH 715
Query: 150 LGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLAPGTAYLVTVTAAFRSGRESALSAKACT 209
Y + F P G A V VP R TL L PG Y+++VTA GR+ +L +
Sbjct: 716 --YRITFTP-SSGIASEVTVPKDRTSYTLTDLEPGAEYIISVTA--ERGRQQSLESTVDA 770
Query: 210 PDGPRP 215
G RP
Sbjct: 771 FTGFRP 776
Score = 42.0 bits (97), Expect = 5e-04
Identities = 46/213 (21%), Positives = 74/213 (34%), Gaps = 36/213 (16%)
Query: 3 PQQLHATEITSSGFRLAWP-PLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGL 61
P+ L I+ L W P+ + YV+ P+A G +Q++PG+ + L
Sbjct: 329 PEDLRVAGISDRSIELEWDGPMAVTE---YVISYQPTALGGLQLQQRVPGDWSGVTITEL 385
Query: 62 DPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEA 121
+P Y++++ + L P +V T
Sbjct: 386 EPGLTYNISVYAVISNILSLPITAKVATHLST---------------------------- 417
Query: 122 GPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGL 181
P+ + ++ V W P S + G+ + F P +VP+ GL
Sbjct: 418 -PQGLQFKTITETTVEVQWEPF--SFSFDGWEISFIPKNNEGGVIAQVPSDVTSFNQTGL 474
Query: 182 APGTAYLVTVTAAFRSGRESALSAKACTP-DGP 213
PG Y+V V A R SA T DGP
Sbjct: 475 KPGEEYIVNVVALKEQARSPPTSASVSTVIDGP 507
Score = 33.9 bits (76), Expect = 0.12
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTT---LQ 179
P+ + + SL + W + A Y V + L G + V VP G TT L
Sbjct: 597 PKNLRVGSRTATSLDLEWDNS--EAEVQEYKVVYSTLAGEQYHEVLVPRGIGPTTRATLT 654
Query: 180 GLAPGTAYLVTVTAAFRSGRESALSAKACTP-DGPR 214
L PGT Y V ++A S + + A T D PR
Sbjct: 655 DLVPGTEYGVGISAVMNSQQSVPATMNARTELDSPR 690
Score = 33.1 bits (74), Expect = 0.21
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 121 AGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLR-GGEAQRVEVPAGRNCTTLQ 179
A PE + ++ RS+ + W G A Y + + P GG + VP + T+
Sbjct: 327 APPEDLRVAGISDRSIELEWD---GPMAVTEYVISYQPTALGGLQLQQRVPGDWSGVTIT 383
Query: 180 GLAPGTAYLVTVTAAFRSGRESALSAKACT 209
L PG Y ++V A + ++AK T
Sbjct: 384 ELEPGLTYNISVYAVISNILSLPITAKVAT 413
Score = 32.0 bits (71), Expect = 0.47
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 3 PQQLHATEITSSGFRLAW-PPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGL 61
P+ + + +T ++W PP+ + D YY + P+ Q G +P T++ L
Sbjct: 867 PKDITISNVTKDSVMVSWSPPVASFD--YYRVSYRPT-QVGRLDSSVVPNTVTEFTITRL 923
Query: 62 DPDTDYDVAL 71
+P T+Y+++L
Sbjct: 924 NPATEYEISL 933
>gi|142976733 surface glycoprotein, Ig superfamily member [Homo
sapiens]
Length = 1264
Score = 43.9 bits (102), Expect = 1e-04
Identities = 44/187 (23%), Positives = 72/187 (38%), Gaps = 26/187 (13%)
Query: 42 GAARRQQLPGNATDWIWAGLDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGP 101
G+ ++PG+ + A L+P + Y+V +V S +P +L RT + AS
Sbjct: 626 GSWHTVRVPGSENELHLAELEPSSLYEVLMVARSAAGEGQPAMLTFRTSKEKT---ASSK 682
Query: 102 ESGAGPAPTQLAALPAPEEA--------------------GPERIVISHARPRSLRVSWA 141
+ A P + P EA P+R IS A S+ V+W
Sbjct: 683 NTQASSPPVGIPKYPVVSEAANNNFGVVLTDSSRHSGVPEAPDRPTISTASETSVYVTWI 742
Query: 142 P-ALGSAAALGYHVQFGPLRGGE--AQRVEVPAGRNCTTLQGLAPGTAYLVTVTAAFRSG 198
P A G + + V++ +R ++P + ++ L PG+ Y V A G
Sbjct: 743 PRANGGSPITAFKVEYKRMRTSNWLVAAEDIPPSKLSVEVRSLEPGSTYKFRVIAINHYG 802
Query: 199 RESALSA 205
SA
Sbjct: 803 ESFRSSA 809
>gi|62988324 tenascin N [Homo sapiens]
Length = 1299
Score = 43.1 bits (100), Expect = 2e-04
Identities = 49/192 (25%), Positives = 70/192 (36%), Gaps = 36/192 (18%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
PQ L + T ++W P D +Y+L P + + ++ Q+P + GL
Sbjct: 265 PQGLQLLKNTEDSLLVSWEPSSQVD--HYLLSYYPLGKELSGKQIQVPKEQHSYEILGLL 322
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
P T Y V L N PQ L A T LA L
Sbjct: 323 PGTKYIVTLRNVKNEVSSSPQHLL---------------------ATTDLAVLGTAW--- 358
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTT---LQ 179
++ SL V W S Y +++GP+ G E V VP + + +
Sbjct: 359 -----VTDETENSLDVEWENP--STEVDYYKLRYGPMTGQEVAEVTVPKSSDPKSRYDIT 411
Query: 180 GLAPGTAYLVTV 191
GL PGT Y +TV
Sbjct: 412 GLHPGTEYKITV 423
Score = 43.1 bits (100), Expect = 2e-04
Identities = 49/213 (23%), Positives = 74/213 (34%), Gaps = 35/213 (16%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
PQ L +T + ++W P+ Y V SA+ G R + + + GL
Sbjct: 711 PQNLVTDRVTENMATVSWDPVRATIDRYVVR--YTSAKDGETREVPVGKEQSSTVLTGLR 768
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
P +Y V + + GA + A T + +
Sbjct: 769 PGVEYTVHVWAQK---------------------GAQESKKADTKAQTDIDS-------- 799
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLA 182
P+ +V + VSW P A + +V GE + V V ++ T L GL
Sbjct: 800 PQNLVTDWVTENTATVSWDPV---QATIDRYVVHYTSANGETREVPVGKEQSSTVLTGLR 856
Query: 183 PGTAYLVTVTAAFRSGRESALSAKACTP-DGPR 214
PG Y V V A + KA T DGP+
Sbjct: 857 PGMEYTVHVWAQKGNQESKKADTKAQTEIDGPK 889
Score = 38.5 bits (88), Expect = 0.005
Identities = 48/213 (22%), Positives = 73/213 (34%), Gaps = 35/213 (16%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P L +T + ++W P+ Y V SA R + + + GL
Sbjct: 534 PANLVTDRVTENTATISWDPVQATIDKYVVR--YTSADDQETREVLVGKEQSSTVLTGLR 591
Query: 63 PDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEEAG 122
P +Y V + + R ++ + APT + +
Sbjct: 592 PGVEYTVHVWAQKGDR---------ESKKADTN------------APTDIDS-------- 622
Query: 123 PERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLA 182
P+ +V VSW P AA+ +V GGE + V V ++ T L GL
Sbjct: 623 PKNLVTDRVTENMATVSWDPV---QAAIDKYVVRYTSAGGETREVPVGKEQSSTVLTGLR 679
Query: 183 PGTAYLVTVTAAFRSGRESALSAKACTP-DGPR 214
PG Y+V V A KA T D P+
Sbjct: 680 PGMEYMVHVWAQKGDQESKKADTKAQTDIDSPQ 712
Score = 36.6 bits (83), Expect = 0.019
Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Query: 122 GPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGL 181
GP+ +V VSW P A Y V++ GE + V V + T L GL
Sbjct: 887 GPKNLVTDWVTENMATVSWDPV--QATIDKYMVRYTSA-DGETREVPVGKEHSSTVLTGL 943
Query: 182 APGTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPRP 219
PG Y+V V A + KA T P RP
Sbjct: 944 RPGMEYMVHVWAQKGAQESKKADTKAQTELDPPRNLRP 981
Score = 30.4 bits (67), Expect = 1.4
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLD 62
P+ L + +T SG L W P GY + P G + QL + GL+
Sbjct: 976 PRNLRPSAVTQSGGILTWTPPSAQIHGYILTYQFPD---GTVKEMQLGREDQRFALQGLE 1032
Query: 63 PDTDYDVALV 72
Y V+LV
Sbjct: 1033 QGATYPVSLV 1042
>gi|109633041 protein tyrosine phosphatase, receptor type, F isoform 1
precursor [Homo sapiens]
Length = 1907
Score = 42.7 bits (99), Expect = 3e-04
Identities = 53/230 (23%), Positives = 84/230 (36%), Gaps = 42/230 (18%)
Query: 3 PQQLHATEITSSGFRLAW-PPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGL 61
PQ LH T +T+S LAW PP+L +G + V + + Q T + GL
Sbjct: 919 PQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNITTDTRFTLTGL 978
Query: 62 DPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAP-EE 120
PDT YD+ +VR + G+GP + + P E+
Sbjct: 979 KPDTTYDI----------------KVR----------AWTSKGSGPLSPSIQSRTMPVEQ 1012
Query: 121 AGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQG 180
+ ++ A S+ +SW +A+ + + + Q VEV +
Sbjct: 1013 VFAKNFRVAAAMKTSVLLSWEVPDSYKSAVPFKILY------NGQSVEVDGHSMRKLIAD 1066
Query: 181 LAPGTAY-LVTVTAAFRSGRESALSAKACTPDGPRPRPRPVPRAPTPGTA 229
L P T Y V + +G L + PD +P P P +A
Sbjct: 1067 LQPNTEYSFVLMNRGSSAGGLQHLVSIRTAPD-------LLPHKPLPASA 1109
Score = 35.0 bits (79), Expect = 0.055
Identities = 54/237 (22%), Positives = 81/237 (34%), Gaps = 49/237 (20%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVL-------ELVPSAQPGAARRQQLPGNATD 55
PQ++ + S+ R++W P ADS V+ E V G + +
Sbjct: 610 PQKVMCVSMGSTTVRVSWVPP-PADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSS 668
Query: 56 WIWAGLDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAAL 115
W GL+ T+Y V + ++V GPG PES T
Sbjct: 669 WDLVGLEKWTEYRVWVRAHTDV-----------------GPG---PESSPVLVRTDEDVP 708
Query: 116 PAPEEAGPERIVISHARPRSLRVSW---APALGSAAALGYHVQFGPLRGGEAQRVEV--- 169
P P ++ + ++ V W P+ GY V + L GE + + +
Sbjct: 709 SGP----PRKVEVEPLNSTAVHVYWKLPVPSKQHGQIRGYQVTYVRLENGEPRGLPIIQD 764
Query: 170 -----------PAGRNCTTLQGLAPGTAYLVTVTAAFRSGRESALSAKACTPDGPRP 215
+ TT+ GL P T Y VTV A G + K T G P
Sbjct: 765 VMLAEAQWRPEESEDYETTISGLTPETTYSVTVAAYTTKGDGARSKPKIVTTTGAVP 821
Score = 28.5 bits (62), Expect = 5.2
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 122 GPERIVISHARPRSLRVSWAPALG-SAAALGYHVQFGPLRGGEAQRVEVPAGRNCT--TL 178
G ++IS + + W P LGY +Q+ R EA+ + G++ T+
Sbjct: 822 GRPTMMISTTAMNTALLQWHPPKELPGELLGYRLQY--CRADEARPNTIDFGKDDQHFTV 879
Query: 179 QGLAPGTAYLVTVTAAFRSGRESALSAKACTPD 211
GL GT Y+ + A R+G + TP+
Sbjct: 880 TGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTPE 912
>gi|109633039 protein tyrosine phosphatase, receptor type, F isoform 2
precursor [Homo sapiens]
Length = 1898
Score = 42.7 bits (99), Expect = 3e-04
Identities = 53/230 (23%), Positives = 84/230 (36%), Gaps = 42/230 (18%)
Query: 3 PQQLHATEITSSGFRLAW-PPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGL 61
PQ LH T +T+S LAW PP+L +G + V + + Q T + GL
Sbjct: 910 PQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNITTDTRFTLTGL 969
Query: 62 DPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAP-EE 120
PDT YD+ +VR + G+GP + + P E+
Sbjct: 970 KPDTTYDI----------------KVR----------AWTSKGSGPLSPSIQSRTMPVEQ 1003
Query: 121 AGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQG 180
+ ++ A S+ +SW +A+ + + + Q VEV +
Sbjct: 1004 VFAKNFRVAAAMKTSVLLSWEVPDSYKSAVPFKILY------NGQSVEVDGHSMRKLIAD 1057
Query: 181 LAPGTAY-LVTVTAAFRSGRESALSAKACTPDGPRPRPRPVPRAPTPGTA 229
L P T Y V + +G L + PD +P P P +A
Sbjct: 1058 LQPNTEYSFVLMNRGSSAGGLQHLVSIRTAPD-------LLPHKPLPASA 1100
Score = 40.0 bits (92), Expect = 0.002
Identities = 55/228 (24%), Positives = 81/228 (35%), Gaps = 40/228 (17%)
Query: 3 PQQLHATEITSSGFRLAWPPLLTADSGYYVL-------ELVPSAQPGAARRQQLPGNATD 55
PQ++ + S+ R++W P ADS V+ E V G + +
Sbjct: 610 PQKVMCVSMGSTTVRVSWVPP-PADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSS 668
Query: 56 WIWAGLDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAAL 115
W GL+ T+Y V + ++V GPG PES T
Sbjct: 669 WDLVGLEKWTEYRVWVRAHTDV-----------------GPG---PESSPVLVRTDEDVP 708
Query: 116 PAPEEAGPERIVISHARPRSLRVSW---APALGSAAALGYHVQFGPLRGGEAQRVEVP-- 170
P P ++ + ++ V W P+ GY V + L GE + + +
Sbjct: 709 SGP----PRKVEVEPLNSTAVHVYWKLPVPSKQHGQIRGYQVTYVRLENGEPRGLPIIQD 764
Query: 171 ---AGRNCTTLQGLAPGTAYLVTVTAAFRSGRESALSAKACTPDGPRP 215
A TT+ GL P T Y VTV A G + K T G P
Sbjct: 765 VMLAEAQETTISGLTPETTYSVTVAAYTTKGDGARSKPKIVTTTGAVP 812
Score = 28.5 bits (62), Expect = 5.2
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 122 GPERIVISHARPRSLRVSWAPALG-SAAALGYHVQFGPLRGGEAQRVEVPAGRNCT--TL 178
G ++IS + + W P LGY +Q+ R EA+ + G++ T+
Sbjct: 813 GRPTMMISTTAMNTALLQWHPPKELPGELLGYRLQY--CRADEARPNTIDFGKDDQHFTV 870
Query: 179 QGLAPGTAYLVTVTAAFRSGRESALSAKACTPD 211
GL GT Y+ + A R+G + TP+
Sbjct: 871 TGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTPE 903
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 42.4 bits (98), Expect = 3e-04
Identities = 48/167 (28%), Positives = 60/167 (35%), Gaps = 40/167 (23%)
Query: 88 RTRPGEAGPGASGPES------GAGPAPTQLAALPAPE---------------EAGPERI 126
R RPG GP GP S AGPAP P PE AGPE
Sbjct: 94 RARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPA 153
Query: 127 VISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLAPGTA 186
A+P + AL + A G GP G PAG PG A
Sbjct: 154 PAGPAKP-----AGPAALAARAGPGPGPGPGP---GPGPGPGKPAG----------PGAA 195
Query: 187 YLVTVTAAFRSGRESALSAKACTPDGPRPRPRPVPRAPTPGTASREP 233
+ +AA + +A A + +GP P+P+ PGT + P
Sbjct: 196 QTLNGSAALLNSHHAAAPAVSLVNNGPAAL-LPLPKPAAPGTVIQTP 241
Score = 33.5 bits (75), Expect = 0.16
Identities = 41/159 (25%), Positives = 48/159 (30%), Gaps = 24/159 (15%)
Query: 94 AGPGASGPESGAGPAPTQLAALPAPEEAGPERIVISHARPR------------------- 134
A P + P A PAP AA P P P + P
Sbjct: 248 APPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGG 307
Query: 135 SLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLAPGTAYLVTVTAA 194
S + APA + G Q GP A V A +Q P L AA
Sbjct: 308 SAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTL----AA 363
Query: 195 FRSGRESALSAKACTPDGPRPRPRPVPRAPTPGTASREP 233
+A T G P P VP P PGT + P
Sbjct: 364 SGPASTAASMVIGPTMQGALPSPAAVP-PPAPGTPTGLP 401
Score = 32.0 bits (71), Expect = 0.47
Identities = 37/135 (27%), Positives = 49/135 (36%), Gaps = 12/135 (8%)
Query: 91 PGEAGPGASGPESGAGPAPTQLAALPAPEEAGPERIVISHARPRSLRVSWAPALGSAAAL 150
P A G +G GP A P + P+R+V A P + + A S AA
Sbjct: 315 PAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVV--QAAPPAAQTLAASGPASTAA- 371
Query: 151 GYHVQFGP-LRGGEAQRVEVPAGRNCTTLQGLAPGTAYLVT-----VTAAFRSGRESALS 204
+ GP ++G VP T GL G A VT A SG + L+
Sbjct: 372 --SMVIGPTMQGALPSPAAVPPPAPGTP-TGLPKGAAGAVTQSLSRTPTATTSGIRATLT 428
Query: 205 AKACTPDGPRPRPRP 219
P P+P P
Sbjct: 429 PTVLAPRLPQPPQNP 443
>gi|83281200 protogenin [Homo sapiens]
Length = 1150
Score = 40.4 bits (93), Expect = 0.001
Identities = 53/215 (24%), Positives = 82/215 (38%), Gaps = 32/215 (14%)
Query: 3 PQQLHATEITSSGFRLAWP-PLLTADSGY-YVLELVPSAQPGAARRQQLPGN-ATDWIWA 59
P +HA ++SS LAW PL +D Y + + + Q + GN T +I
Sbjct: 422 PYNVHAETMSSSAILLAWERPLYNSDKVIAYSVHYMKAEGLNNEEYQVVIGNDTTHYIID 481
Query: 60 GLDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPE 119
L+P ++Y +V + GAS + L PE
Sbjct: 482 DLEPASNYTFYIVAYMPM-------------------GASQMSDHVTQNTLEDVPLRPPE 522
Query: 120 EAGPERIVISHARPRSLRVSWAPALGS---AAALGYHVQFGPLRGGEAQRVEVPAGRNCT 176
I ++ P + +SW P + Y + F Q +E+P +
Sbjct: 523 ------ISLTSRSPTDILISWLPIPAKYRRGQVVLYRLSFRLSTENSIQVLELPGTTHEY 576
Query: 177 TLQGLAPGTAYLVTVTAAFRSG-RESALSAKACTP 210
L+GL P + YLV +TAA R G ES++ TP
Sbjct: 577 LLEGLKPDSVYLVRITAATRVGLGESSVWTSHRTP 611
Score = 36.2 bits (82), Expect = 0.025
Identities = 49/227 (21%), Positives = 82/227 (36%), Gaps = 37/227 (16%)
Query: 3 PQQLHATEITSSGFRLAW--PPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAG 60
P L+A TSS L W P A Y + P A+ L + T + G
Sbjct: 725 PHHLYAKANTSSSIFLHWRRPAFTAAQIINYTIRCNPVGLQNASLVLYLQTSETHMLVQG 784
Query: 61 LDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAPEE 120
L+P+T Y+ A +R + ++ + ++ PE+ AGP
Sbjct: 785 LEPNTKYEFA---------VRLHVDQLSSPWSPVVYHSTLPEAPAGP------------- 822
Query: 121 AGPERIVISHARPRSLRVSWAPALG-SAAALGYHVQFGPLR---GGEAQRVEVPAGRNCT 176
P + ++ + VSW P G Y + + + GE Q +
Sbjct: 823 --PVGVKVTLIEDDTALVSWKPPDGPETVVTRYTILYASRKAWIAGEWQVLHREGAITMA 880
Query: 177 TLQGLAPGTAYLVTVTAA-------FRSGRESALSAKACTPDGPRPR 216
L+ L G Y+V ++A+ F + E A+ K + RP+
Sbjct: 881 LLENLVAGNVYIVKISASNEVGEGPFSNSVELAVLPKETSESNQRPK 927
Score = 31.6 bits (70), Expect = 0.61
Identities = 51/230 (22%), Positives = 84/230 (36%), Gaps = 26/230 (11%)
Query: 1 MRPQQLHATEITSSGFRLAWPPLLTA-DSGYYVLELVPS--AQPGAARRQQLPGNATDWI 57
+RP ++ T + + ++W P+ G VL + + + + +LPG +++
Sbjct: 518 LRPPEISLTSRSPTDILISWLPIPAKYRRGQVVLYRLSFRLSTENSIQVLELPGTTHEYL 577
Query: 58 WAGLDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPA 117
GL PD+ Y V + + V L GE +S S P T + A +
Sbjct: 578 LEGLKPDSVYLVRITAATRVGL------------GE----SSVWTSHRTPKATSVKAPKS 621
Query: 118 PEEAGPERIVISHARPRSLRVSWAPALGSAAAL-GYHVQFGPLRGGEAQRVEVPAGRNCT 176
PE + + ++ V W + AA+ GY + + E + +
Sbjct: 622 PE------LHLEPLNCTTISVRWQQDVEDTAAIQGYKLYYKEEGQQENGPIFLDTKDLLY 675
Query: 177 TLQGLAPGTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPRPVPRAPTP 226
TL GL P Y V + A TP R R VP P P
Sbjct: 676 TLSGLDPRRKYHVRLLAYNNIDDGYQADQTVSTPGCVSVRDRMVPPPPPP 725
>gi|18860892 protein tyrosine phosphatase, receptor type, D isoform
3 precursor [Homo sapiens]
Length = 1903
Score = 40.4 bits (93), Expect = 0.001
Identities = 53/233 (22%), Positives = 90/233 (38%), Gaps = 39/233 (16%)
Query: 3 PQQLHATEITSSGFRLAW-PPLLTADSGYYV-LELVPSAQPGAARRQQ----LPGNATDW 56
PQ + T +S+ ++W PP + +G + +A G + +P + T +
Sbjct: 613 PQDISCTSPSSTSILVSWQPPPVEKQNGIITEYSIKYTAVDGEDDKPHEILGIPSDTTKY 672
Query: 57 IWAGLDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALP 116
+ L+ T+Y + + ++V P+ L V R E P SGP
Sbjct: 673 LLEQLEKWTEYRITVTAHTDVGP-GPESLSVLIRTNEDVP--SGP--------------- 714
Query: 117 APEEAGPERIVISHARPRSLRVSW---APALGSAAALGYHVQFGPLRGGEAQ-----RVE 168
P ++ + S++VSW P GY V + + GE + +
Sbjct: 715 ------PRKVEVEAVNSTSVKVSWRSPVPNKQHGQIRGYQVHYVRMENGEPKGQPMLKDV 768
Query: 169 VPAGRNCTTLQGLAPGTAYLVTVTAAFRSGRESALSAKACTPDGPRP-RPRPV 220
+ A + GL P T+Y +TVTA G + K + G P +PR V
Sbjct: 769 MLADAQDMIISGLQPETSYSLTVTAYTTKGDGARSKPKLVSTTGAVPGKPRLV 821
Score = 36.6 bits (83), Expect = 0.019
Identities = 55/222 (24%), Positives = 83/222 (37%), Gaps = 38/222 (17%)
Query: 3 PQQLHATEITSSGFRLAW-PPLLTADSGY---YVLELVPSAQPGAARRQQLPGNATDWIW 58
PQ LH+ TS+ +L+W PP+L +G Y L P Q + T
Sbjct: 913 PQNLHSEGTTSTSVQLSWQPPVLAERNGIITKYTLLYRDINIPLLPMEQLIVPADTTMTL 972
Query: 59 AGLDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQLAALPAP 118
GL PDT YDV +VR + GPG P Q LP
Sbjct: 973 TGLKPDTTYDV----------------KVRAHTSK-GPGPYSPS-------VQFRTLPV- 1007
Query: 119 EEAGPERIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTTL 178
++ + + S+ +SW +A+ + + + + + VE GR L
Sbjct: 1008 DQVFAKNFHVKAVMKTSVLLSWEIPENYNSAMPFKILY-----DDGKMVEEVDGRATQKL 1062
Query: 179 -QGLAPGTAYLVTVTAAFRS--GRESALSAKACTPDGPRPRP 217
L P +Y +T S G + ++AK PD R +P
Sbjct: 1063 IVNLKPEKSYSFVLTNRGNSAGGLQHRVTAKT-APDVLRTKP 1103
Score = 34.3 bits (77), Expect = 0.094
Identities = 41/207 (19%), Positives = 76/207 (36%), Gaps = 39/207 (18%)
Query: 3 PQQLHATEITSSGFRLAW-PPLLTADSGY---YVLELV------PSAQPGAARRQQLPGN 52
P+++ + S+ +++W P+ G Y + V P QP + + +
Sbjct: 715 PRKVEVEAVNSTSVKVSWRSPVPNKQHGQIRGYQVHYVRMENGEPKGQP--MLKDVMLAD 772
Query: 53 ATDWIWAGLDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQL 112
A D I +GL P+T Y + + T G+ S G P
Sbjct: 773 AQDMIISGLQPETSYSLTVT--------------AYTTKGDGARSKPKLVSTTGAVP--- 815
Query: 113 AALPAPEEAGPERIVISHARPRSLRVSWAPALGSAAAL-GYHVQFGPLRGGEAQRVEVPA 171
G R+VI+H + + + W P + + L GY ++FG +E
Sbjct: 816 ---------GKPRLVINHTQMNTALIQWHPPVDTFGPLQGYRLKFGRKDMEPLTTLEFSE 866
Query: 172 GRNCTTLQGLAPGTAYLVTVTAAFRSG 198
+ T + G +Y+ ++A + G
Sbjct: 867 KEDHFTATDIHKGASYVFRLSARNKVG 893
Score = 28.9 bits (63), Expect = 3.9
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 9 TEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATD-WIWAGLDPDTDY 67
TE T++ L W YY+++ P + ++ G AT + AGL P +DY
Sbjct: 332 TESTATSITLTWDSGNPEPVSYYIIQHKPKNSEELYK--EIDGVATTRYSVAGLSPYSDY 389
Query: 68 DVALVPESNVRLLRPQILRVRTRPGEAGPGAS 99
+ +V +N+ P V T+ E P ++
Sbjct: 390 EFRVVAVNNIG-RGPPSEPVLTQTSEQAPSSA 420
>gi|4885631 tyrosine kinase with immunoglobulin-like and EGF-like
domains 1 [Homo sapiens]
Length = 1138
Score = 40.0 bits (92), Expect = 0.002
Identities = 65/215 (30%), Positives = 88/215 (40%), Gaps = 30/215 (13%)
Query: 18 LAWPPLLTADSGYYVLE-LVPSAQPG---AARRQQLPGNAT-DWIWAGLDPDTDYDVALV 72
LA P LLT S V+ LV + G R P ++T DW +DP + V
Sbjct: 450 LAAPRLLTKQSRQLVVSPLVSFSGDGPISTVRLHYRPQDSTMDWSTIVVDPSEN-----V 504
Query: 73 PESNVRLLRPQILRVR-TRPGEAGPGASGPE---SGAGPAPTQLAALPAPEEAGPERIVI 128
N+R +RV+ +RPGE G GA GP + P P L G +R
Sbjct: 505 TLMNLRPKTGYSVRVQLSRPGEGGEGAWGPPTLMTTDCPEPLLQPWLEGWHVEGTDR--- 561
Query: 129 SHARPRSLRVSWAPAL--GSAAALGYHVQFGPLRGGEAQRVEVPAGRNCTT-LQGLAPGT 185
LRVSW+ L G G+ ++ G+ +R V + + T L GL PGT
Sbjct: 562 -------LRVSWSLPLVPGPLVGDGFLLRLWDGTRGQERRENVSSPQARTALLTGLTPGT 614
Query: 186 AYLVTVTAAFRS--GRESALSAKACTPDGPRPRPR 218
Y + V + G S + P GP P PR
Sbjct: 615 HYQLDVQLYHCTLLGPASPPAHVLLPPSGP-PAPR 648
Score = 28.1 bits (61), Expect = 6.7
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 14/62 (22%)
Query: 3 PQQLHATEITSSGFRLAW--PPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAG 60
P+ LHA ++ S +L W P L YV+E+ Q+ G A D +W
Sbjct: 647 PRHLHAQALSDSEIQLTWKHPEALPGPISKYVVEV------------QVAGGAGDPLWID 694
Query: 61 LD 62
+D
Sbjct: 695 VD 696
>gi|4827022 contactin 2 precursor [Homo sapiens]
Length = 1040
Score = 39.7 bits (91), Expect = 0.002
Identities = 44/173 (25%), Positives = 62/173 (35%), Gaps = 17/173 (9%)
Query: 53 ATDWIWAGLDPDTDYDVALVPESNVRLLRPQILRVRTRPGEAGPGASGPESGAGPAPTQL 112
+T W A + P D + +VR P +++R S G GP
Sbjct: 755 STHWQTARV-PGADAQYFVYSNESVRPYTPFEVKIR----------SYNRRGDGPESLTA 803
Query: 113 AALPAPEE--AGPERIVISHARPRSLRVSWAPALG--SAAALGYHVQFGPLRGGEA--QR 166
A EE P ++ + V+W P + LGY +++ EA R
Sbjct: 804 LVYSAEEEPRVAPTKVWAKGVSSSEMNVTWEPVQQDMNGILLGYEIRYWKAGDKEAAADR 863
Query: 167 VEVPAGRNCTTLQGLAPGTAYLVTVTAAFRSGRESALSAKACTPDGPRPRPRP 219
V + GL P T Y VTV A R+G A + T P PR P
Sbjct: 864 VRTAGLDTSARVSGLHPNTKYHVTVRAYNRAGTGPASPSANATTMKPPPRRPP 916
>gi|104487297 protein tyrosine phosphatase, receptor type, sigma
isoform 2 precursor [Homo sapiens]
Length = 1910
Score = 39.7 bits (91), Expect = 0.002
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 135 SLRVSWAPALGSAA--ALGYHVQFGPLRGGEAQRVEVPAGRNCTTLQGLAPGTAYLVTVT 192
SL W P G+A LGY +QFG +E P + T G+ G Y+ +
Sbjct: 825 SLLARWEPPAGTAEDQVLGYRLQFGREDSTPLATLEFPPSEDRYTASGVHKGATYVFRLA 884
Query: 193 AAFRSG-RESALSAKACTPDGPRPRPR 218
A R G E A + D PR P+
Sbjct: 885 ARSRGGLGEEAAEVLSIPEDTPRGHPQ 911
Score = 38.5 bits (88), Expect = 0.005
Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 11/112 (9%)
Query: 98 ASGPESGAGPAPTQLAALPAPEEAGPERIV--ISHARPRSLRVSW---APALGSAAALGY 152
A+ G G ++ ++P G +I+ +A ++ + W PA + A + Y
Sbjct: 884 AARSRGGLGEEAAEVLSIPEDTPRGHPQILEAAGNASAGTVLLRWLPPVPAERNGAIVKY 943
Query: 153 HVQ------FGPLRGGEAQRVEVPAGRNCTTLQGLAPGTAYLVTVTAAFRSG 198
V GP R E P N TLQGL P TAY + V A R G
Sbjct: 944 TVAVREAGALGPARETELPAAAEPGAENALTLQGLKPDTAYDLQVRAHTRRG 995
Score = 30.8 bits (68), Expect = 1.0
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 9 TEITSSGFRLAWPPLLTADSGYYVLELVPSAQPGAARRQQLPGNATDWIWAGLDPDTDYD 68
TE T++ + W YYV+E +Q G + ++ T + GL P+++Y+
Sbjct: 328 TENTATSITITWDSGNPDPVSYYVIEYKSKSQDGPYQIKE-DITTTRYSIGGLSPNSEYE 386
Query: 69 VALVPESNVRLLRPQILRVRTRPGEAGPGASGPES 103
+ + +++ P V TR GE P AS P +
Sbjct: 387 IWVSAVNSIG-QGPPSESVVTRTGEQAP-ASAPRN 419
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,073,087
Number of Sequences: 37866
Number of extensions: 717227
Number of successful extensions: 5623
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 298
Number of HSP's that attempted gapping in prelim test: 4775
Number of HSP's gapped (non-prelim): 1058
length of query: 233
length of database: 18,247,518
effective HSP length: 99
effective length of query: 134
effective length of database: 14,498,784
effective search space: 1942837056
effective search space used: 1942837056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.