Guide to the Human Genome
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Name: NT5DC1 Sequence: fasta or formatted (455aa) NCBI GI: 38570156
Description:

5'-nucleotidase, cytosolic II-like 1 protein

Referenced in:

Nucleotide Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         26           2
 C cysteine            2.4         11           2
 D aspartate           6.2         28           1
 E glutamate           7.0         32           2
 F phenylalanine       5.3         24           2
 G glycine             5.9         27           1
 H histidine           2.4         11           1
 I isoleucine          4.2         19           1
 K lysine              8.1         37           2
 L leucine            11.4         52           3
 M methionine          1.5          7           2
 N asparagine          4.6         21           2
 P proline             5.5         25           2
 Q glutamine           2.0          9           1
 R arginine            3.5         16           1
 S serine              8.1         37           3
 T threonine           5.1         23           1
 V valine              4.0         18           2
 W tryptophan          1.8          8           1
 Y tyrosine            5.3         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   5'-nucleotidase, cytosolic II-like 1 protein 
NT5DC3                0.100   5'-nucleotidase domain containing 3 
NT5DC2                0.079   5'-nucleotidase domain containing 2 isoform 1 [Homo...
NT5DC2                0.079   5'-nucleotidase domain containing 2 isoform 2 
NT5DC4                0.066   PREDICTED: 5'-nucleotidase domain containing 4 [Hom...
NT5DC4                0.066   PREDICTED: 5'-nucleotidase domain containing 4 [Hom...
NT5DC4                0.066   PREDICTED: 5'-nucleotidase domain containing 4 [Hom...
NT5C2                 0.054   5'-nucleotidase, cytosolic II 
NT5C2                 0.054   5'-nucleotidase, cytosolic II 
FHDC1                 0.010   FH2 domain containing 1 
FBXW10                0.010   F-box and WD-40 domain protein 10 
ETF1                  0.008   eukaryotic translation termination factor 1 
FAM129B               0.005   hypothetical protein LOC64855 isoform 1 
FAM129B               0.005   hypothetical protein LOC64855 isoform 2 
PI4KA                 0.005   phosphatidylinositol 4-kinase type 3 alpha isoform 1 ...
PI4KA                 0.005   phosphatidylinositol 4-kinase type 3 alpha isoform ...
VPS13C                0.004   vacuolar protein sorting 13C protein isoform 1A [Hom...
VPS13C                0.004   vacuolar protein sorting 13C protein isoform 1B [Hom...
VPS13C                0.004   vacuolar protein sorting 13C protein isoform 2B [Hom...
VPS13C                0.004   vacuolar protein sorting 13C protein isoform 2A [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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