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Search of human proteins with 38570140
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38570140 alkB, alkylation repair homolog 6 isoform 1 [Homo
sapiens]
(161 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38570140 alkB, alkylation repair homolog 6 isoform 1 [Homo sa... 337 2e-93
gi|109148544 alkB, alkylation repair homolog 6 isoform 2 [Homo s... 299 8e-82
gi|195927056 alkB, alkylation repair homolog 8 [Homo sapiens] 33 0.14
gi|33356547 minichromosome maintenance complex component 2 [Homo... 29 1.5
gi|224177565 FGF receptor activating protein 1 isoform 3 [Homo s... 28 4.5
gi|110349719 titin isoform N2-A [Homo sapiens] 27 5.8
gi|5902052 relaxin 1 preproprotein [Homo sapiens] 27 5.8
gi|239758086 PREDICTED: similar to double homeobox, 4 [Homo sapi... 27 5.8
gi|91208418 transcription elongation regulator 1 isoform 2 [Homo... 27 5.8
gi|21327715 transcription elongation regulator 1 isoform 1 [Homo... 27 5.8
gi|8923019 alkB, alkylation repair homolog 4 [Homo sapiens] 27 5.8
gi|34915994 transducin-like enhancer protein 4 [Homo sapiens] 27 7.6
gi|13375636 PR domain containing 14 [Homo sapiens] 27 7.6
gi|222136684 prickle homolog 1 [Homo sapiens] 27 9.9
gi|222136682 prickle homolog 1 [Homo sapiens] 27 9.9
gi|222136680 prickle homolog 1 [Homo sapiens] 27 9.9
gi|222136678 prickle homolog 1 [Homo sapiens] 27 9.9
gi|239751314 PREDICTED: hypothetical protein XP_002347802 [Homo ... 27 9.9
>gi|38570140 alkB, alkylation repair homolog 6 isoform 1 [Homo
sapiens]
Length = 161
Score = 337 bits (865), Expect = 2e-93
Identities = 161/161 (100%), Positives = 161/161 (100%)
Query: 1 MAGRGMGMLNLEIGGDAGGRIGCKELVLMEEQDARVPALEPFRVEQAPPVIYYVPDFISK 60
MAGRGMGMLNLEIGGDAGGRIGCKELVLMEEQDARVPALEPFRVEQAPPVIYYVPDFISK
Sbjct: 1 MAGRGMGMLNLEIGGDAGGRIGCKELVLMEEQDARVPALEPFRVEQAPPVIYYVPDFISK 60
Query: 61 EEEEYLLRQVFNAPKPKWTQLSGRKLQNWGGLPHPRGMVPERLPPWLQRYVDKVSNLSLF 120
EEEEYLLRQVFNAPKPKWTQLSGRKLQNWGGLPHPRGMVPERLPPWLQRYVDKVSNLSLF
Sbjct: 61 EEEEYLLRQVFNAPKPKWTQLSGRKLQNWGGLPHPRGMVPERLPPWLQRYVDKVSNLSLF 120
Query: 121 GGLPANHVLVNQYLPGEGIMHHQPGLPHRAGLLRAAAARGR 161
GGLPANHVLVNQYLPGEGIMHHQPGLPHRAGLLRAAAARGR
Sbjct: 121 GGLPANHVLVNQYLPGEGIMHHQPGLPHRAGLLRAAAARGR 161
>gi|109148544 alkB, alkylation repair homolog 6 isoform 2 [Homo
sapiens]
Length = 266
Score = 299 bits (765), Expect = 8e-82
Identities = 142/145 (97%), Positives = 143/145 (98%)
Query: 1 MAGRGMGMLNLEIGGDAGGRIGCKELVLMEEQDARVPALEPFRVEQAPPVIYYVPDFISK 60
MAGRGMGMLNLEIGGDAGGRIGCKELVLMEEQDARVPALEPFRVEQAPPVIYYVPDFISK
Sbjct: 1 MAGRGMGMLNLEIGGDAGGRIGCKELVLMEEQDARVPALEPFRVEQAPPVIYYVPDFISK 60
Query: 61 EEEEYLLRQVFNAPKPKWTQLSGRKLQNWGGLPHPRGMVPERLPPWLQRYVDKVSNLSLF 120
EEEEYLLRQVFNAPKPKWTQLSGRKLQNWGGLPHPRGMVPERLPPWLQRYVDKVSNLSLF
Sbjct: 61 EEEEYLLRQVFNAPKPKWTQLSGRKLQNWGGLPHPRGMVPERLPPWLQRYVDKVSNLSLF 120
Query: 121 GGLPANHVLVNQYLPGEGIMHHQPG 145
GGLPANHVLVNQYLPGEGIM H+ G
Sbjct: 121 GGLPANHVLVNQYLPGEGIMPHEDG 145
>gi|195927056 alkB, alkylation repair homolog 8 [Homo sapiens]
Length = 664
Score = 32.7 bits (73), Expect = 0.14
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 24/117 (20%)
Query: 43 RVEQAPPVIYYVPDFISKEEEEYLLRQVFNAPKPKWTQ----------LSGRKLQNWGGL 92
R + PP + V + IS EEE+ LL V WT+ L R+++++G
Sbjct: 129 RPQALPPGLMVVEEIISSEEEKMLLESV------DWTEDTDNQNSQKSLKHRRVKHFGYE 182
Query: 93 PHPRGMVPER-------LPPWLQRYVDKVSNLSLFGGLPANHVLVNQYLPGEGIMHH 142
H ++ LP + +++K P + + +NQY PG+GI H
Sbjct: 183 FHYENNNVDKDKPLSGGLPDICESFLEKWLRKGYIKHKP-DQMTINQYEPGQGIPAH 238
>gi|33356547 minichromosome maintenance complex component 2 [Homo
sapiens]
Length = 904
Score = 29.3 bits (64), Expect = 1.5
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 26/111 (23%)
Query: 2 AGRGMGMLNLEIGGDAGGRIGCKELVLMEEQDARVPALEPFRVEQAPPVIYYVPDFISKE 61
AGRG+G + + D+ +E+D PA + +VE+A E
Sbjct: 124 AGRGLGRMRRGLLYDS------------DEEDEERPARKRRQVERATE---------DGE 162
Query: 62 EEEYLLRQVFNAPKPKWTQLSGRKLQNWGGLPHPRGMVPERLPPWLQRYVD 112
E+E ++ + N L G ++ W + PR + R +L+ +VD
Sbjct: 163 EDEEMIESIENLE-----DLKGHSVREWVSMAGPRLEIHHRFKNFLRTHVD 208
>gi|224177565 FGF receptor activating protein 1 isoform 3 [Homo
sapiens]
Length = 161
Score = 27.7 bits (60), Expect = 4.5
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 79 TQLSGRKLQNWGGLPHPRGMVPERLPPWLQRYVDKVSNLSLFGGLPANHVLVNQYLPGEG 138
TQL G +L G L H RG P +L R SL GGL L +LP
Sbjct: 5 TQLRGAQLPALGELSHRRGGAPALRVAFLHR---PALGASLLGGLRLLEPLPQLHLP--- 58
Query: 139 IMHHQPGLP 147
+ P LP
Sbjct: 59 VFLLSPALP 67
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 27.3 bits (59), Expect = 5.8
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 28 LMEEQDARVPALEPFRVEQAPPVIYYVPDFISKEEE 63
++EE+ A VP P R E PP +Y P+ I+ EEE
Sbjct: 10783 VLEEKPA-VPV--PERAESPPPEVYEEPEEIAPEEE 10815
>gi|5902052 relaxin 1 preproprotein [Homo sapiens]
Length = 185
Score = 27.3 bits (59), Expect = 5.8
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 24/82 (29%)
Query: 45 EQAP----PVIYYVPDFISKEEEEYLLRQVFNAPKPKWTQLSGRKLQNWGGLPHPRGMVP 100
E AP PV VP FI+K+ E ++ F A P P + +
Sbjct: 60 EDAPQTPRPVAEIVPSFINKDTETIIIMLEFIANLP----------------PELKAALS 103
Query: 101 ERLP--PWLQRYVD--KVSNLS 118
ER P P LQ+YV K SNLS
Sbjct: 104 ERQPSLPELQQYVPALKDSNLS 125
>gi|239758086 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 422
Score = 27.3 bits (59), Expect = 5.8
Identities = 24/80 (30%), Positives = 27/80 (33%), Gaps = 15/80 (18%)
Query: 74 PKPKWTQLSGRKLQNWGGLPHPRGMVPERLPPWLQRYVDKVSNLSLFGGLPANHVLV--- 130
P P W + + G PH VP LP FG A V V
Sbjct: 173 PAPSWVAFAHTGVWGTGLPPHHLPCVPAALP------------TGAFGSQGARAVPVLXP 220
Query: 131 NQYLPGEGIMHHQPGLPHRA 150
+Q P EGI P L H A
Sbjct: 221 SQAAPAEGISQPAPALKHFA 240
>gi|91208418 transcription elongation regulator 1 isoform 2 [Homo
sapiens]
Length = 1077
Score = 27.3 bits (59), Expect = 5.8
Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 12 EIGGDAGG--RIGCKELVLMEEQDARV--PALEPFRVEQAPPVIYYVPDFISKEEEEYLL 67
E GGD G R EL + ++Q R PA P V + PP + P ++
Sbjct: 3 ERGGDGGESERFNPGELRMAQQQALRFRGPAPPPNAVMRGPPPLMRPPPPFG------MM 56
Query: 68 RQVFNAPKPKWTQLSGRKL--QNWGGLPHPRGMVPERLPPWLQR 109
R P+P + GR N +P P G+ P PP LQR
Sbjct: 57 RGPPPPPRPPF----GRPPFDPNMPPMPPPGGIPPPMGPPHLQR 96
>gi|21327715 transcription elongation regulator 1 isoform 1 [Homo
sapiens]
Length = 1098
Score = 27.3 bits (59), Expect = 5.8
Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 12 EIGGDAGG--RIGCKELVLMEEQDARV--PALEPFRVEQAPPVIYYVPDFISKEEEEYLL 67
E GGD G R EL + ++Q R PA P V + PP + P ++
Sbjct: 3 ERGGDGGESERFNPGELRMAQQQALRFRGPAPPPNAVMRGPPPLMRPPPPFG------MM 56
Query: 68 RQVFNAPKPKWTQLSGRKL--QNWGGLPHPRGMVPERLPPWLQR 109
R P+P + GR N +P P G+ P PP LQR
Sbjct: 57 RGPPPPPRPPF----GRPPFDPNMPPMPPPGGIPPPMGPPHLQR 96
>gi|8923019 alkB, alkylation repair homolog 4 [Homo sapiens]
Length = 302
Score = 27.3 bits (59), Expect = 5.8
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 49 PVIYYVPDFISKEEEEYLLRQVFNAPKPKW-TQLSGRKLQNWG 90
P + + DF+++EEE L+R + P W SGR+ Q++G
Sbjct: 71 PGVMLIEDFVTREEEAELVRLMDRDP---WKLSQSGRRKQDYG 110
>gi|34915994 transducin-like enhancer protein 4 [Homo sapiens]
Length = 773
Score = 26.9 bits (58), Expect = 7.6
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 13/75 (17%)
Query: 44 VEQAPPVIYYVPDFISKEEEEYLLRQVFNAPKPKWTQLS---GRKLQ-----NWGGLP-- 93
V++ + V F+S+E ++ +++ V A + +L+ G++LQ + GLP
Sbjct: 88 VKRLNAICAQVIPFLSQEHQQQVVQAVERAKQVTMAELNAIIGQQLQAQHLSHGHGLPVP 147
Query: 94 ---HPRGMVPERLPP 105
HP G+ P +PP
Sbjct: 148 LTPHPSGLQPPAIPP 162
>gi|13375636 PR domain containing 14 [Homo sapiens]
Length = 571
Score = 26.9 bits (58), Expect = 7.6
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 19/79 (24%)
Query: 29 MEEQDARVPALEPFRVEQAPPVIYYVPDFISKEEEEYLLRQVFNAPKPKWTQLSGRKLQN 88
+E + PA+ PF APP++ P + E Y L W KL
Sbjct: 56 LEAAASAAPAMPPFPFRMAPPLL--SPGLGLQREPLYDL---------PWYS----KLPP 100
Query: 89 WGGLPHPRGMVPERLPPWL 107
W +PH VP +PP+L
Sbjct: 101 WYPIPH----VPREVPPFL 115
>gi|222136684 prickle homolog 1 [Homo sapiens]
Length = 831
Score = 26.6 bits (57), Expect = 9.9
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 23 CKELVLMEEQDARVPALEPFRVEQAPPVIYYVPDFISKEEEEYLLRQVFNAPKPKWTQLS 82
C E +L EE+ +P L + + P + + D I + +RQ P ++ +
Sbjct: 603 CPEKILPEEKPVHLPVLRRSKSQSRPQQVKFSDDVIDNGNYDIEIRQ------PPMSERT 656
Query: 83 GRKLQNW 89
R++ N+
Sbjct: 657 RRRVYNF 663
>gi|222136682 prickle homolog 1 [Homo sapiens]
Length = 831
Score = 26.6 bits (57), Expect = 9.9
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 23 CKELVLMEEQDARVPALEPFRVEQAPPVIYYVPDFISKEEEEYLLRQVFNAPKPKWTQLS 82
C E +L EE+ +P L + + P + + D I + +RQ P ++ +
Sbjct: 603 CPEKILPEEKPVHLPVLRRSKSQSRPQQVKFSDDVIDNGNYDIEIRQ------PPMSERT 656
Query: 83 GRKLQNW 89
R++ N+
Sbjct: 657 RRRVYNF 663
>gi|222136680 prickle homolog 1 [Homo sapiens]
Length = 831
Score = 26.6 bits (57), Expect = 9.9
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 23 CKELVLMEEQDARVPALEPFRVEQAPPVIYYVPDFISKEEEEYLLRQVFNAPKPKWTQLS 82
C E +L EE+ +P L + + P + + D I + +RQ P ++ +
Sbjct: 603 CPEKILPEEKPVHLPVLRRSKSQSRPQQVKFSDDVIDNGNYDIEIRQ------PPMSERT 656
Query: 83 GRKLQNW 89
R++ N+
Sbjct: 657 RRRVYNF 663
>gi|222136678 prickle homolog 1 [Homo sapiens]
Length = 831
Score = 26.6 bits (57), Expect = 9.9
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 23 CKELVLMEEQDARVPALEPFRVEQAPPVIYYVPDFISKEEEEYLLRQVFNAPKPKWTQLS 82
C E +L EE+ +P L + + P + + D I + +RQ P ++ +
Sbjct: 603 CPEKILPEEKPVHLPVLRRSKSQSRPQQVKFSDDVIDNGNYDIEIRQ------PPMSERT 656
Query: 83 GRKLQNW 89
R++ N+
Sbjct: 657 RRRVYNF 663
>gi|239751314 PREDICTED: hypothetical protein XP_002347802 [Homo
sapiens]
Length = 179
Score = 26.6 bits (57), Expect = 9.9
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 54 VPDFISKEEEEYLLRQVFNAPKPKWTQLSGRKLQNWGGLPHPRG-------MVPERLPPW 106
VP F+ EE +Q +AP+P+ GRK G P G + PPW
Sbjct: 38 VPMFLCSSPEEAKPKQGSSAPRPELASPCGRKTLCKGSRQAPPGPQAHFQQCIWSASPPW 97
Query: 107 L 107
+
Sbjct: 98 V 98
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.142 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,517,722
Number of Sequences: 37866
Number of extensions: 390351
Number of successful extensions: 809
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 800
Number of HSP's gapped (non-prelim): 24
length of query: 161
length of database: 18,247,518
effective HSP length: 94
effective length of query: 67
effective length of database: 14,688,114
effective search space: 984103638
effective search space used: 984103638
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.