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Search of human proteins with 38569466
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38569466 ROD1 regulator of differentiation 1 [Homo sapiens]
(552 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38569466 ROD1 regulator of differentiation 1 [Homo sapiens] 1094 0.0
gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Hom... 831 0.0
gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Ho... 816 0.0
gi|14165466 polypyrimidine tract-binding protein 1 isoform c [Ho... 787 0.0
gi|10863997 polypyrimidine tract binding protein 2 [Homo sapiens] 749 0.0
gi|28558998 polypyrimidine tract-binding protein 1 isoform d [Ho... 311 8e-85
gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a ... 153 3e-37
gi|217416379 heterogeneous nuclear ribonucleoprotein L-like isof... 153 5e-37
gi|20149709 heterogeneous nuclear ribonucleoprotein L-like isofo... 153 5e-37
gi|52632385 heterogeneous nuclear ribonucleoprotein L isoform b ... 135 7e-32
gi|197276594 RNA binding motif protein 20 [Homo sapiens] 67 4e-11
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] 58 3e-08
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens] 52 2e-06
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens] 52 2e-06
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens] 52 2e-06
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens] 52 2e-06
gi|62750354 matrin 3 [Homo sapiens] 49 9e-06
gi|21626466 matrin 3 [Homo sapiens] 49 9e-06
gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo sa... 44 3e-04
gi|62526045 zinc finger protein 638 [Homo sapiens] 44 4e-04
gi|21626468 zinc finger protein 638 [Homo sapiens] 44 4e-04
gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo s... 41 0.003
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 40 0.004
gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo s... 40 0.004
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 40 0.004
gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens] 39 0.009
gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens] 39 0.009
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 39 0.012
gi|4759156 small nuclear ribonucleoprotein polypeptide A [Homo s... 39 0.016
gi|224028246 non-POU domain containing, octamer-binding isoform ... 38 0.021
>gi|38569466 ROD1 regulator of differentiation 1 [Homo sapiens]
Length = 552
Score = 1094 bits (2829), Expect = 0.0
Identities = 552/552 (100%), Positives = 552/552 (100%)
Query: 1 MDGVVTDLITVGLKRGSDELLSSGIINGPFTMNSSTPSTANGNDSKKFKRDRPPCSPSRV 60
MDGVVTDLITVGLKRGSDELLSSGIINGPFTMNSSTPSTANGNDSKKFKRDRPPCSPSRV
Sbjct: 1 MDGVVTDLITVGLKRGSDELLSSGIINGPFTMNSSTPSTANGNDSKKFKRDRPPCSPSRV 60
Query: 61 LHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITPH 120
LHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITPH
Sbjct: 61 LHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITPH 120
Query: 121 LRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSP 180
LRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSP
Sbjct: 121 LRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSP 180
Query: 181 VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALD 240
VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALD
Sbjct: 181 VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALD 240
Query: 241 GQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGI 300
GQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGI
Sbjct: 241 GQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGI 300
Query: 301 ISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPGNSVL 360
ISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPGNSVL
Sbjct: 301 ISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPGNSVL 360
Query: 361 LVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRL 420
LVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRL
Sbjct: 361 LVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRL 420
Query: 421 YGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLS 480
YGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLS
Sbjct: 421 YGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLS 480
Query: 481 NIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGEN 540
NIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGEN
Sbjct: 481 NIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGEN 540
Query: 541 HHLRVSFSKSTI 552
HHLRVSFSKSTI
Sbjct: 541 HHLRVSFSKSTI 552
>gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Homo
sapiens]
Length = 557
Score = 831 bits (2147), Expect = 0.0
Identities = 430/560 (76%), Positives = 482/560 (86%), Gaps = 11/560 (1%)
Query: 1 MDGVVTDLITVGLKRGSDELLSSGIINGPFTMNSSTPSTANGNDSKKFKRD-RPPCSPSR 59
MDG+V D I VG KRGSDEL S+ + NGPF M+S++ S ANGNDSKKFK D R PSR
Sbjct: 1 MDGIVPD-IAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSR 59
Query: 60 VLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITP 119
V+H+RK+P DVTE E+ISLGLPFGKVTNLLMLKGK+QAF+EM +EEAA TMVNYYT +TP
Sbjct: 60 VIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTP 119
Query: 120 HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPS--NEGTVLPG 177
LR QP+YIQ+SNH+ELKTD+ PNQARAQAALQAV++VQSG+LAL+ + + G + G
Sbjct: 120 VLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAG 179
Query: 178 QSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKM 237
QSPVLRII+ENLFYPVTL+VLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV+A +AK+
Sbjct: 180 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKL 239
Query: 238 ALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGA 297
+LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRD+TR DLP+GD QPSL+ MAAAFGA
Sbjct: 240 SLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGA 299
Query: 298 PGIIS-SPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVT----GRMAIPGAS 352
PGIIS SPYAGA GF P PQA GLSVP V GAL PL I S+A GR+AIPG +
Sbjct: 300 PGIISASPYAGA-GFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLA 358
Query: 353 GIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAM 412
G GNSVLLV+NLNP+ +TP LFILFGVYGDV RVKI+FNKKENALVQMAD NQAQLAM
Sbjct: 359 GA-GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAM 417
Query: 413 NHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFP 472
+HL+G +L+GK +R TLSKHQ VQLPREGQEDQGLTKD+ NSPLHRFKKPGSKNFQNIFP
Sbjct: 418 SHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFP 477
Query: 473 PSATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIEL 532
PSATLHLSNIPPSV+ +DLK LF G VK FKFFQKDRKMALIQ+GSVEEA+QALI+L
Sbjct: 478 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDL 537
Query: 533 HNHDLGENHHLRVSFSKSTI 552
HNHDLGENHHLRVSFSKSTI
Sbjct: 538 HNHDLGENHHLRVSFSKSTI 557
>gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Homo
sapiens]
Length = 550
Score = 816 bits (2108), Expect = 0.0
Identities = 423/559 (75%), Positives = 476/559 (85%), Gaps = 16/559 (2%)
Query: 1 MDGVVTDLITVGLKRGSDELLSSGIINGPFTMNSSTPSTANGNDSKKFKRD-RPPCSPSR 59
MDG+V D I VG KRGSDEL S+ + NGPF M+S++ S ANGNDSKKFK D R PSR
Sbjct: 1 MDGIVPD-IAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSR 59
Query: 60 VLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITP 119
V+H+RK+P DVTE E+ISLGLPFGKVTNLLMLKGK+QAF+EM +EEAA TMVNYYT +TP
Sbjct: 60 VIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTP 119
Query: 120 HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPS--NEGTVLPG 177
LR QP+YIQ+SNH+ELKTD+ PNQARAQAALQAV++VQSG+LAL+ + + G + G
Sbjct: 120 VLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAG 179
Query: 178 QSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKM 237
QSPVLRII+ENLFYPVTL+VLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV+A +AK+
Sbjct: 180 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKL 239
Query: 238 ALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGA 297
+LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRD+TR DLP+GD QPSL+ MAAAF
Sbjct: 240 SLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAF-- 297
Query: 298 PGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVT----GRMAIPGASG 353
+SPYAGA GF P PQA GLSVP V GAL PL I S+A GR+AIPG +G
Sbjct: 298 ----ASPYAGA-GFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAG 352
Query: 354 IPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMN 413
GNSVLLV+NLNP+ +TP LFILFGVYGDV RVKI+FNKKENALVQMAD NQAQLAM+
Sbjct: 353 A-GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMS 411
Query: 414 HLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPP 473
HL+G +L+GK +R TLSKHQ VQLPREGQEDQGLTKD+ NSPLHRFKKPGSKNFQNIFPP
Sbjct: 412 HLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPP 471
Query: 474 SATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 533
SATLHLSNIPPSV+ +DLK LF G VK FKFFQKDRKMALIQ+GSVEEA+QALI+LH
Sbjct: 472 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLH 531
Query: 534 NHDLGENHHLRVSFSKSTI 552
NHDLGENHHLRVSFSKSTI
Sbjct: 532 NHDLGENHHLRVSFSKSTI 550
>gi|14165466 polypyrimidine tract-binding protein 1 isoform c [Homo
sapiens]
Length = 531
Score = 787 bits (2033), Expect = 0.0
Identities = 411/559 (73%), Positives = 463/559 (82%), Gaps = 35/559 (6%)
Query: 1 MDGVVTDLITVGLKRGSDELLSSGIINGPFTMNSSTPSTANGNDSKKFKRD-RPPCSPSR 59
MDG+V D I VG KRGSDEL S+ + NGPF M+S++ S ANGNDSKKFK D R PSR
Sbjct: 1 MDGIVPD-IAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSR 59
Query: 60 VLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITP 119
V+H+RK+P DVTE E+ISLGLPFGKVTNLLMLKGK+QAF+EM +EEAA TMVNYYT +TP
Sbjct: 60 VIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTP 119
Query: 120 HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPS--NEGTVLPG 177
LR QP+YIQ+SNH+ELKTD+ PNQARAQAALQAV++VQSG+LAL+ + + G + G
Sbjct: 120 VLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAG 179
Query: 178 QSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKM 237
QSPVLRII+ENLFYPVTL+VLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV+A +AK+
Sbjct: 180 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKL 239
Query: 238 ALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGA 297
+LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRD+TR DLP+GD QPSL+ MAAAFG
Sbjct: 240 SLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFG- 298
Query: 298 PGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVT----GRMAIPGASG 353
LSVP V GAL PL I S+A GR+AIPG +G
Sbjct: 299 -------------------------LSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAG 333
Query: 354 IPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMN 413
GNSVLLV+NLNP+ +TP LFILFGVYGDV RVKI+FNKKENALVQMAD NQAQLAM+
Sbjct: 334 A-GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMS 392
Query: 414 HLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPP 473
HL+G +L+GK +R TLSKHQ VQLPREGQEDQGLTKD+ NSPLHRFKKPGSKNFQNIFPP
Sbjct: 393 HLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPP 452
Query: 474 SATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 533
SATLHLSNIPPSV+ +DLK LF G VK FKFFQKDRKMALIQ+GSVEEA+QALI+LH
Sbjct: 453 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLH 512
Query: 534 NHDLGENHHLRVSFSKSTI 552
NHDLGENHHLRVSFSKSTI
Sbjct: 513 NHDLGENHHLRVSFSKSTI 531
>gi|10863997 polypyrimidine tract binding protein 2 [Homo sapiens]
Length = 531
Score = 749 bits (1934), Expect = 0.0
Identities = 383/558 (68%), Positives = 453/558 (81%), Gaps = 33/558 (5%)
Query: 1 MDGVVTDLITVGLKRGSDELLSSGIINGPFTMNSSTPSTANGNDSKKFK-RDRPPCSPSR 59
MDG+VT+ + VG+KRGSDELLS +++ P + SS TANGNDSKKFK D+ +PSR
Sbjct: 1 MDGIVTE-VAVGVKRGSDELLSGSVLSSPNSNMSSMVVTANGNDSKKFKGEDKMDGAPSR 59
Query: 60 VLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITP 119
VLH+RK+P +VTE E+I+LGLPFGKVTN+LMLKGK+QAFLE+A+EEAA+TMVNYY+ +TP
Sbjct: 60 VLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTP 119
Query: 120 HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQS 179
HLR+QP+YIQYSNH+ELKTDN NQ RAQA LQAV+AVQ+ + LSG +E V P QS
Sbjct: 120 HLRNQPIYIQYSNHKELKTDNTLNQ-RAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQS 178
Query: 180 PVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMAL 239
PVLRIII+N++YPVTL+VLHQIFSKFG VLKIITFTKNNQFQALLQY DPVNA AK+AL
Sbjct: 179 PVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLAL 238
Query: 240 DGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPG 299
DGQNIYNACCTLRIDFSKL +LNVKYNNDKSRD+TR DLP+GDGQP+L+P +AAAF
Sbjct: 239 DGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAF---- 294
Query: 300 IISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPG--- 356
A S+ AVPGAL PL I ++A A G G+PG
Sbjct: 295 --------------------AKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSA 334
Query: 357 --NSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 414
N+VLLV+NLN +++TP LF LFGVYGDV RVKI++NKK++AL+QMAD NQ+QLAMNH
Sbjct: 335 GGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNH 394
Query: 415 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPS 474
L+GQ++YGK++R TLSKHQ VQLPREG +DQGLTKDF NSPLHRFKKPGSKNFQNIFPPS
Sbjct: 395 LNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPS 454
Query: 475 ATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHN 534
ATLHLSNIPPSV +DL+ LF G +VKAFKFFQ D KMAL+Q+ +VEEAIQALI+LHN
Sbjct: 455 ATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQ-DHKMALLQMATVEEAIQALIDLHN 513
Query: 535 HDLGENHHLRVSFSKSTI 552
++LGENHHLRVSFSKSTI
Sbjct: 514 YNLGENHHLRVSFSKSTI 531
>gi|28558998 polypyrimidine tract-binding protein 1 isoform d [Homo
sapiens]
Length = 197
Score = 311 bits (798), Expect = 8e-85
Identities = 153/183 (83%), Positives = 166/183 (90%)
Query: 370 ITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATL 429
+TP LFILFGVYGDV RVKI+FNKKENALVQMAD NQAQLAM+HL+G +L+GK +R TL
Sbjct: 15 VTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 74
Query: 430 SKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVD 489
SKHQ VQLPREGQEDQGLTKD+ NSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSV+ +
Sbjct: 75 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEE 134
Query: 490 DLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 549
DLK LF G VK FKFFQKDRKMALIQ+GSVEEA+QALI+LHNHDLGENHHLRVSFSK
Sbjct: 135 DLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 194
Query: 550 STI 552
STI
Sbjct: 195 STI 197
Score = 33.5 bits (75), Expect = 0.52
Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 12/192 (6%)
Query: 70 VTEAEIISLGLPFGKVTNLLMLKGKSQ-AFLEMASEEAAVTMVNYYTPITPH-LRSQPVY 127
VT + L +G V + +L K + A ++MA A +++ + H L +P+
Sbjct: 15 VTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSH---LNGHKLHGKPIR 71
Query: 128 IQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIE 187
I S H+ ++ LP + + L G N + P P + +
Sbjct: 72 ITLSKHQNVQ---LPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFP---PSATLHLS 125
Query: 188 NLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNA 247
N+ V+ E L +FS G V+K F + ++ AL+Q A A + L ++
Sbjct: 126 NIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL-GE 184
Query: 248 CCTLRIDFSKLT 259
LR+ FSK T
Sbjct: 185 NHHLRVSFSKST 196
>gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a
[Homo sapiens]
Length = 589
Score = 153 bits (387), Expect = 3e-37
Identities = 134/506 (26%), Positives = 226/506 (44%), Gaps = 55/506 (10%)
Query: 52 RPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMV 111
+ P SP V+H+R + V EA+++ FG ++ ++++ K QA +E A V
Sbjct: 97 KTPASP--VVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAV 154
Query: 112 NYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNE 171
NY ++ P ++ YS +++ + +R+
Sbjct: 155 NYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSV----------------------- 191
Query: 172 GTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVN 231
+ VL I N Y +T +VL+ I + G V +I+ F KN QA++++ +
Sbjct: 192 -------NSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNG-VQAMVEFDSVQS 243
Query: 232 AHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL---- 287
A AK +L+G +IY+ CCTL+I+++K T LNV N+ + D+T +L +G G P
Sbjct: 244 AQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNL-SGQGDPGSNPNK 302
Query: 288 ---EPPMA----AAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 340
+PP+ A +G P + G+ P + + P GP
Sbjct: 303 RQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQ 362
Query: 341 AVTGRMAIPGASGIP--GNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENA 398
P P + VL+V L+ + +F +F +YG+V +VK M +K A
Sbjct: 363 YGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAA 422
Query: 399 LVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPRE--GQEDQGLT-KDFSNSP 455
+V+MAD A+ HL+ ++G+ L +SK A+ +P + G ED + KDFS S
Sbjct: 423 MVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAI-MPGQSYGLEDGSCSYKDFSESR 481
Query: 456 LHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAG----CSVKAFKFFQKD 511
+RF P I PS LH N P VT ++ + E G SVK F +
Sbjct: 482 NNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSER 541
Query: 512 RKMALIQLGSVEEAIQALIELHNHDL 537
L++ S +A++ L L+++ +
Sbjct: 542 SSSGLLEWESKSDALETLGFLNHYQM 567
Score = 30.4 bits (67), Expect = 4.4
Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 25/171 (14%)
Query: 382 YGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPREG 441
+G + V +M KK ALV+ D A A+N+ + ++Y ++ H A
Sbjct: 125 FGPISYVVVM-PKKRQALVEFEDVLGACNAVNYAADNQIY-------IAGHPAF------ 170
Query: 442 QEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAGCS 501
+ S + +PG + + N S+T D L + G
Sbjct: 171 ---------VNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCG-P 220
Query: 502 VKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGEN-HHLRVSFSKST 551
V+ F+K+ A+++ SV+ A +A L+ D+ L++ ++K T
Sbjct: 221 VQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPT 271
>gi|217416379 heterogeneous nuclear ribonucleoprotein L-like isoform
2 [Homo sapiens]
Length = 537
Score = 153 bits (386), Expect = 5e-37
Identities = 135/509 (26%), Positives = 235/509 (46%), Gaps = 54/509 (10%)
Query: 56 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 115
S S V+H+R + V EA+++ FG + ++M+ K QA +E + ++A V +
Sbjct: 68 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAA 127
Query: 116 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVL 175
++ Q + YS + + + G+ + PS
Sbjct: 128 DEPVYIAGQQAFFNYSTSKRI--------------------TRPGN---TDDPS------ 158
Query: 176 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 235
G + VL + I+N YP+T++VL+ + + G V +I+ F K N QA++++ + A A
Sbjct: 159 -GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKA 216
Query: 236 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAF 295
K AL+G +IY CCTL+I++++ T LNV N++ S D+T+ L D + A
Sbjct: 217 KAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQ---RQAI 273
Query: 296 GAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALG-PLTITSSAVTGRMAIPGASGI 354
S + G P + P + P + PL SS+ G
Sbjct: 274 LGEHPSSFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYM-------HGGN 326
Query: 355 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 414
P SV++V+ L+ + +F LF +YG++ +VK M ALV+M D + A+ H
Sbjct: 327 PSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTH 386
Query: 415 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLT--KDFSNSPLHRFKKPGSKNFQNIFP 472
L+ +L+GK L +SK +V + + + G + KDF+ S +RF G + I P
Sbjct: 387 LNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQP 446
Query: 473 PSATLHLSNIPPSVTVDDLKNLF----IEAGCSVKAFKFFQKDRKMA-LIQLGSVEEAIQ 527
PS LH N+P VT + L + K F + ++ L++ +A++
Sbjct: 447 PSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVE 506
Query: 528 ALIELHNHDL----GEN-HHLRVSFSKST 551
AL L+++ + G N + L++ FS S+
Sbjct: 507 ALTALNHYQIRVPNGSNPYTLKLCFSTSS 535
>gi|20149709 heterogeneous nuclear ribonucleoprotein L-like isoform
1 [Homo sapiens]
Length = 542
Score = 153 bits (386), Expect = 5e-37
Identities = 135/509 (26%), Positives = 235/509 (46%), Gaps = 54/509 (10%)
Query: 56 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 115
S S V+H+R + V EA+++ FG + ++M+ K QA +E + ++A V +
Sbjct: 73 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAA 132
Query: 116 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVL 175
++ Q + YS + + + G+ + PS
Sbjct: 133 DEPVYIAGQQAFFNYSTSKRI--------------------TRPGN---TDDPS------ 163
Query: 176 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 235
G + VL + I+N YP+T++VL+ + + G V +I+ F K N QA++++ + A A
Sbjct: 164 -GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKA 221
Query: 236 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAF 295
K AL+G +IY CCTL+I++++ T LNV N++ S D+T+ L D + A
Sbjct: 222 KAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQ---RQAI 278
Query: 296 GAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALG-PLTITSSAVTGRMAIPGASGI 354
S + G P + P + P + PL SS+ G
Sbjct: 279 LGEHPSSFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYM-------HGGN 331
Query: 355 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 414
P SV++V+ L+ + +F LF +YG++ +VK M ALV+M D + A+ H
Sbjct: 332 PSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTH 391
Query: 415 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLT--KDFSNSPLHRFKKPGSKNFQNIFP 472
L+ +L+GK L +SK +V + + + G + KDF+ S +RF G + I P
Sbjct: 392 LNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQP 451
Query: 473 PSATLHLSNIPPSVTVDDLKNLF----IEAGCSVKAFKFFQKDRKMA-LIQLGSVEEAIQ 527
PS LH N+P VT + L + K F + ++ L++ +A++
Sbjct: 452 PSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVE 511
Query: 528 ALIELHNHDL----GEN-HHLRVSFSKST 551
AL L+++ + G N + L++ FS S+
Sbjct: 512 ALTALNHYQIRVPNGSNPYTLKLCFSTSS 540
>gi|52632385 heterogeneous nuclear ribonucleoprotein L isoform b
[Homo sapiens]
Length = 456
Score = 135 bits (341), Expect = 7e-32
Identities = 123/464 (26%), Positives = 202/464 (43%), Gaps = 53/464 (11%)
Query: 94 KSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQA 153
K QA +E A VNY ++ P ++ YS +++ + +R+
Sbjct: 4 KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSV----- 58
Query: 154 VSAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIIT 213
+ VL I N Y +T +VL+ I + G V +I+
Sbjct: 59 -------------------------NSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVI 93
Query: 214 FTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDF 273
F KN QA++++ +A AK +L+G +IY+ CCTL+I+++K T LNV N+ + D+
Sbjct: 94 FRKNG-VQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDY 152
Query: 274 TRLDLPTGDGQPSL-------EPPMA----AAFGAPGIISSPYAGAAGFAPAIGFPQATG 322
T +L +G G P +PP+ A +G P + G+ P +
Sbjct: 153 TNPNL-SGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRR 211
Query: 323 LSVPAVPGALGPLTITSSAVTGRMAIPGASGIP--GNSVLLVTNLNPDLITPHGLFILFG 380
+ P GP P P + VL+V L+ + +F +F
Sbjct: 212 MGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFC 271
Query: 381 VYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPRE 440
+YG+V +VK M +K A+V+MAD A+ HL+ ++G+ L +SK A+ +P +
Sbjct: 272 LYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAI-MPGQ 330
Query: 441 --GQEDQGLT-KDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIE 497
G ED + KDFS S +RF P I PS LH N P VT ++ + E
Sbjct: 331 SYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDE 390
Query: 498 AG----CSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDL 537
G SVK F + L++ S +A++ L L+++ +
Sbjct: 391 LGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQM 434
>gi|197276594 RNA binding motif protein 20 [Homo sapiens]
Length = 1227
Score = 67.0 bits (162), Expect = 4e-11
Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 59 RVLHLRKIP-CDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPI 117
RV+H+ +P TE ++I+LGLPFGKVTN +++K +QAFLEMA EAA MV YY
Sbjct: 518 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQAFLEMAYTEAAQAMVQYYQEK 577
Query: 118 TPHLRSQPVYIQYSNHRELKTDNLPNQARAQAAL 151
+ + + + I+ S + K L +A AA+
Sbjct: 578 SAVINGEKLLIRMS--KRYKELQLKKPGKAVAAI 609
>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
Length = 380
Score = 57.8 bits (138), Expect = 3e-08
Identities = 92/426 (21%), Positives = 167/426 (39%), Gaps = 76/426 (17%)
Query: 25 IINGPFTMNSSTPSTANGNDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGK 84
+ NGP + S+ PS+ N N + L + +P ++T+ E SL G+
Sbjct: 12 VSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE 71
Query: 85 VTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQ 144
+ + +++ K + + VNY P + I N L+T +
Sbjct: 72 IESCKLVRDK------ITGQSLGYGFVNYIDP-----KDAEKAINTLNGLRLQTKTI--- 117
Query: 145 ARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSK 204
+ A + ++++ +L +SG P +T + L Q+FS+
Sbjct: 118 -KVSYARPSSASIRDANLYVSGLPKT----------------------MTQKELEQLFSQ 154
Query: 205 FGTVLK----IITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTS 260
+G ++ + T ++ +++ + A A L+GQ A
Sbjct: 155 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT----------EP 204
Query: 261 LNVKYNNDKSRDFTRLDLPTGDGQPSLEPP-----MAAAFGAPGIISSPYAGAAGFAPAI 315
+ VK+ N+ S+ ++ L P+ P A F +++ Y
Sbjct: 205 ITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAY---------- 254
Query: 316 GFPQATGLSVP--AVPGALGPLTITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLITPH 373
G + VP A P P+TI M IPG +G + V NL+PD
Sbjct: 255 GVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGT--GWCIFVYNLSPDS-DES 311
Query: 374 GLFILFGVYGDVHRVKIM--FNK---KENALVQMADANQAQLAMNHLSGQRLYGKVLRAT 428
L+ LFG +G V+ VK++ FN K V M + ++A +A+ L+G RL +VL+ +
Sbjct: 312 VLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 371
Query: 429 LSKHQA 434
++A
Sbjct: 372 FKTNKA 377
Score = 34.7 bits (78), Expect = 0.23
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 361 LVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKEN-----ALVQMADANQAQLAMNHL 415
L+ N P +T LFG G++ K++ +K V D A+ A+N L
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 416 SGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHR 458
+G RL K ++ + ++ + + GL K + L +
Sbjct: 108 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 150
>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
Length = 369
Score = 51.6 bits (122), Expect = 2e-06
Identities = 89/424 (20%), Positives = 164/424 (38%), Gaps = 86/424 (20%)
Query: 25 IINGPFTMNSSTPSTANGNDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGK 84
+ NGP + S+ PS+ N N + L + +P ++T+ E SL G+
Sbjct: 15 VSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE 74
Query: 85 VTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQ 144
+ + +++ K + + VNY P + I N L+T +
Sbjct: 75 IESCKLVRDK------ITGQSLGYGFVNYIDP-----KDAEKAINTLNGLRLQTKTI--- 120
Query: 145 ARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSK 204
+ A + ++++ +L +SG P +T + L Q+FS+
Sbjct: 121 -KVSYARPSSASIRDANLYVSGLPKT----------------------MTQKELEQLFSQ 157
Query: 205 FGTVLK----IITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTS 260
+G ++ + T ++ +++ + A A L+GQ A
Sbjct: 158 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT----------EP 207
Query: 261 LNVKYNNDKSRDFTRLDLPTGDGQPSLEPP-----MAAAFGAPGIISSPYAGAAGFAPAI 315
+ VK+ N+ S+ ++ L P+ P A F +++ Y G F+P
Sbjct: 208 ITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAY-GVKRFSP-- 264
Query: 316 GFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGL 375
+TI M IPG +G + V NL+PD L
Sbjct: 265 -------------------ITIDGMTSLVGMNIPGHTGT--GWCIFVYNLSPDS-DESVL 302
Query: 376 FILFGVYGDVHRVKIM--FNK---KENALVQMADANQAQLAMNHLSGQRLYGKVLRATLS 430
+ LFG +G V+ VK++ FN K V M + ++A +A+ L+G RL +VL+ +
Sbjct: 303 WQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 362
Query: 431 KHQA 434
++A
Sbjct: 363 TNKA 366
Score = 34.7 bits (78), Expect = 0.23
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 361 LVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKEN-----ALVQMADANQAQLAMNHL 415
L+ N P +T LFG G++ K++ +K V D A+ A+N L
Sbjct: 51 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 110
Query: 416 SGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHR 458
+G RL K ++ + ++ + + GL K + L +
Sbjct: 111 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 153
>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
Length = 366
Score = 51.6 bits (122), Expect = 2e-06
Identities = 89/424 (20%), Positives = 164/424 (38%), Gaps = 86/424 (20%)
Query: 25 IINGPFTMNSSTPSTANGNDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGK 84
+ NGP + S+ PS+ N N + L + +P ++T+ E SL G+
Sbjct: 12 VSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE 71
Query: 85 VTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQ 144
+ + +++ K + + VNY P + I N L+T +
Sbjct: 72 IESCKLVRDK------ITGQSLGYGFVNYIDP-----KDAEKAINTLNGLRLQTKTI--- 117
Query: 145 ARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSK 204
+ A + ++++ +L +SG P +T + L Q+FS+
Sbjct: 118 -KVSYARPSSASIRDANLYVSGLPKT----------------------MTQKELEQLFSQ 154
Query: 205 FGTVLK----IITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTS 260
+G ++ + T ++ +++ + A A L+GQ A
Sbjct: 155 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT----------EP 204
Query: 261 LNVKYNNDKSRDFTRLDLPTGDGQPSLEPP-----MAAAFGAPGIISSPYAGAAGFAPAI 315
+ VK+ N+ S+ ++ L P+ P A F +++ Y G F+P
Sbjct: 205 ITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAY-GVKRFSP-- 261
Query: 316 GFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGL 375
+TI M IPG +G + V NL+PD L
Sbjct: 262 -------------------ITIDGMTSLVGMNIPGHTGT--GWCIFVYNLSPDS-DESVL 299
Query: 376 FILFGVYGDVHRVKIM--FNK---KENALVQMADANQAQLAMNHLSGQRLYGKVLRATLS 430
+ LFG +G V+ VK++ FN K V M + ++A +A+ L+G RL +VL+ +
Sbjct: 300 WQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 359
Query: 431 KHQA 434
++A
Sbjct: 360 TNKA 363
Score = 34.7 bits (78), Expect = 0.23
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 361 LVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKEN-----ALVQMADANQAQLAMNHL 415
L+ N P +T LFG G++ K++ +K V D A+ A+N L
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 416 SGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHR 458
+G RL K ++ + ++ + + GL K + L +
Sbjct: 108 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 150
>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
Length = 383
Score = 51.6 bits (122), Expect = 2e-06
Identities = 89/424 (20%), Positives = 164/424 (38%), Gaps = 86/424 (20%)
Query: 25 IINGPFTMNSSTPSTANGNDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGK 84
+ NGP + S+ PS+ N N + L + +P ++T+ E SL G+
Sbjct: 29 VSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE 88
Query: 85 VTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQ 144
+ + +++ K + + VNY P + I N L+T +
Sbjct: 89 IESCKLVRDK------ITGQSLGYGFVNYIDP-----KDAEKAINTLNGLRLQTKTI--- 134
Query: 145 ARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSK 204
+ A + ++++ +L +SG P +T + L Q+FS+
Sbjct: 135 -KVSYARPSSASIRDANLYVSGLPKT----------------------MTQKELEQLFSQ 171
Query: 205 FGTVLK----IITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTS 260
+G ++ + T ++ +++ + A A L+GQ A
Sbjct: 172 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT----------EP 221
Query: 261 LNVKYNNDKSRDFTRLDLPTGDGQPSLEPP-----MAAAFGAPGIISSPYAGAAGFAPAI 315
+ VK+ N+ S+ ++ L P+ P A F +++ Y G F+P
Sbjct: 222 ITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAY-GVKRFSP-- 278
Query: 316 GFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGL 375
+TI M IPG +G + V NL+PD L
Sbjct: 279 -------------------ITIDGMTSLVGMNIPGHTGT--GWCIFVYNLSPDS-DESVL 316
Query: 376 FILFGVYGDVHRVKIM--FNK---KENALVQMADANQAQLAMNHLSGQRLYGKVLRATLS 430
+ LFG +G V+ VK++ FN K V M + ++A +A+ L+G RL +VL+ +
Sbjct: 317 WQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 376
Query: 431 KHQA 434
++A
Sbjct: 377 TNKA 380
Score = 34.7 bits (78), Expect = 0.23
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 361 LVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKEN-----ALVQMADANQAQLAMNHL 415
L+ N P +T LFG G++ K++ +K V D A+ A+N L
Sbjct: 65 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 124
Query: 416 SGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHR 458
+G RL K ++ + ++ + + GL K + L +
Sbjct: 125 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 167
>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
Length = 366
Score = 51.6 bits (122), Expect = 2e-06
Identities = 89/424 (20%), Positives = 164/424 (38%), Gaps = 86/424 (20%)
Query: 25 IINGPFTMNSSTPSTANGNDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGK 84
+ NGP + S+ PS+ N N + L + +P ++T+ E SL G+
Sbjct: 12 VSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE 71
Query: 85 VTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQ 144
+ + +++ K + + VNY P + I N L+T +
Sbjct: 72 IESCKLVRDK------ITGQSLGYGFVNYIDP-----KDAEKAINTLNGLRLQTKTI--- 117
Query: 145 ARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSK 204
+ A + ++++ +L +SG P +T + L Q+FS+
Sbjct: 118 -KVSYARPSSASIRDANLYVSGLPKT----------------------MTQKELEQLFSQ 154
Query: 205 FGTVLK----IITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTS 260
+G ++ + T ++ +++ + A A L+GQ A
Sbjct: 155 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT----------EP 204
Query: 261 LNVKYNNDKSRDFTRLDLPTGDGQPSLEPP-----MAAAFGAPGIISSPYAGAAGFAPAI 315
+ VK+ N+ S+ ++ L P+ P A F +++ Y G F+P
Sbjct: 205 ITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAY-GVKRFSP-- 261
Query: 316 GFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGL 375
+TI M IPG +G + V NL+PD L
Sbjct: 262 -------------------ITIDGMTSLVGMNIPGHTGT--GWCIFVYNLSPDS-DESVL 299
Query: 376 FILFGVYGDVHRVKIM--FNK---KENALVQMADANQAQLAMNHLSGQRLYGKVLRATLS 430
+ LFG +G V+ VK++ FN K V M + ++A +A+ L+G RL +VL+ +
Sbjct: 300 WQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 359
Query: 431 KHQA 434
++A
Sbjct: 360 TNKA 363
Score = 34.7 bits (78), Expect = 0.23
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 361 LVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKEN-----ALVQMADANQAQLAMNHL 415
L+ N P +T LFG G++ K++ +K V D A+ A+N L
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 416 SGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHR 458
+G RL K ++ + ++ + + GL K + L +
Sbjct: 108 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 150
>gi|62750354 matrin 3 [Homo sapiens]
Length = 847
Score = 49.3 bits (116), Expect = 9e-06
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 12/112 (10%)
Query: 45 SKKFKRDRPPCSP-----------SRVLHLRKIP-CDVTEAEIISLGLPFGKVTNLLMLK 92
S+K+KR + P RV+HL +P +++ ++ L P+GK+ N ++++
Sbjct: 471 SQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR 530
Query: 93 GKSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQ 144
KSQAF+EM + E A+ MV++ + + V + S + +PN+
Sbjct: 531 MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLVLRIPNR 582
Score = 45.4 bits (106), Expect = 1e-04
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 26 INGPFTMNSSTPSTANGNDSKKFKRDRPPCSPSRVLHLRKIPCDVT-EAEIISLGLPFGK 84
+ GP NGN + SRV+H+ +++ L PFG
Sbjct: 365 LGGPAVGPRGNLGAGNGNLQGPRHMQKGRVETSRVVHIMDFQRGKNLRYQLLQLVEPFGV 424
Query: 85 VTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSN--HRELKTDNLP 142
++N L+L ++AF+EMA+ E A V+YYT + +PV + S R K + P
Sbjct: 425 ISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIKKPEGKP 484
Query: 143 NQ 144
+Q
Sbjct: 485 DQ 486
Score = 31.6 bits (70), Expect = 2.0
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 25/140 (17%)
Query: 390 IMFNKKENALVQMADANQAQLAMNH--LSGQRLYGKVLRATLS-KHQAVQLPREGQEDQG 446
++ NK A ++MA AQ A+++ + ++GK +R LS K++ ++ P EG+ DQ
Sbjct: 429 LILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIKKP-EGKPDQ- 486
Query: 447 LTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFK 506
F +HLSN+P S D E +K +
Sbjct: 487 -------------------KFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNY- 526
Query: 507 FFQKDRKMALIQLGSVEEAI 526
+ + A I++ + E+A+
Sbjct: 527 ILMRMKSQAFIEMETREDAM 546
>gi|21626466 matrin 3 [Homo sapiens]
Length = 847
Score = 49.3 bits (116), Expect = 9e-06
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 12/112 (10%)
Query: 45 SKKFKRDRPPCSP-----------SRVLHLRKIP-CDVTEAEIISLGLPFGKVTNLLMLK 92
S+K+KR + P RV+HL +P +++ ++ L P+GK+ N ++++
Sbjct: 471 SQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR 530
Query: 93 GKSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQ 144
KSQAF+EM + E A+ MV++ + + V + S + +PN+
Sbjct: 531 MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLVLRIPNR 582
Score = 45.4 bits (106), Expect = 1e-04
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 26 INGPFTMNSSTPSTANGNDSKKFKRDRPPCSPSRVLHLRKIPCDVT-EAEIISLGLPFGK 84
+ GP NGN + SRV+H+ +++ L PFG
Sbjct: 365 LGGPAVGPRGNLGAGNGNLQGPRHMQKGRVETSRVVHIMDFQRGKNLRYQLLQLVEPFGV 424
Query: 85 VTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSN--HRELKTDNLP 142
++N L+L ++AF+EMA+ E A V+YYT + +PV + S R K + P
Sbjct: 425 ISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIKKPEGKP 484
Query: 143 NQ 144
+Q
Sbjct: 485 DQ 486
Score = 31.6 bits (70), Expect = 2.0
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 25/140 (17%)
Query: 390 IMFNKKENALVQMADANQAQLAMNH--LSGQRLYGKVLRATLS-KHQAVQLPREGQEDQG 446
++ NK A ++MA AQ A+++ + ++GK +R LS K++ ++ P EG+ DQ
Sbjct: 429 LILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIKKP-EGKPDQ- 486
Query: 447 LTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFK 506
F +HLSN+P S D E +K +
Sbjct: 487 -------------------KFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNY- 526
Query: 507 FFQKDRKMALIQLGSVEEAI 526
+ + A I++ + E+A+
Sbjct: 527 ILMRMKSQAFIEMETREDAM 546
>gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo
sapiens]
Length = 486
Score = 44.3 bits (103), Expect = 3e-04
Identities = 84/343 (24%), Positives = 131/343 (38%), Gaps = 74/343 (21%)
Query: 22 SSGIINGPFTMNSSTPSTANGNDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLP 81
S+G +NG + + PST D K L + +IP ++ E ++ L
Sbjct: 29 SAGHMNG-LSHSPGNPSTIPMKDHDAIK-----------LFIGQIPRNLDEKDLKPLFEE 76
Query: 82 FGKVTNLLMLKG------KSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRE 135
FGK+ L +LK K AFL E+A L++Q S E
Sbjct: 77 FGKIYELTVLKDRFTGMHKGCAFLTYCERESA-------------LKAQ------SALHE 117
Query: 136 LKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTL 195
KT LP R A S + GS L PS + + G L +
Sbjct: 118 QKT--LPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGM----------LNKQQSE 165
Query: 196 EVLHQIFSKFGTVLKIITF---TKNNQFQALLQYADPVNAHYAKMALDG-QNIYNACCTL 251
+ + ++F FG + + N++ A ++Y+ A A AL G Q + A +L
Sbjct: 166 DDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSL 225
Query: 252 RIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAGF 311
+ F+ + DK R R+ GQ + PMA FGA G +
Sbjct: 226 VVKFA---------DTDKERTMRRMQQMA--GQMGMFNPMAIPFGAYG----------AY 264
Query: 312 APAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI 354
A A+ QA ++ A G L P+ ++A +MA +G+
Sbjct: 265 AQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGL 307
>gi|62526045 zinc finger protein 638 [Homo sapiens]
Length = 1978
Score = 43.9 bits (102), Expect = 4e-04
Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 13/120 (10%)
Query: 60 VLHLRKIPCD-VTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYY--TP 116
VL + ++P D TE ++ L PFGKV ++L++ + +A+LEM +EA ++ Y TP
Sbjct: 677 VLLITELPEDGCTEEDVRKLFQPFGKVNDVLIVPYRKEAYLEMEFKEAITAIMKYIETTP 736
Query: 117 ITPHLRSQPVYI---QYSNHRELKTDNLPNQ-------ARAQAALQAVSAVQSGSLALSG 166
+T +S + + + + ++E+K L ++ R A +AV V S S A +G
Sbjct: 737 LTIKGKSVKICVPGKKKAQNKEVKKKTLESKKVSASTLKRDADASKAVEIVTSTSAAKTG 796
Score = 36.6 bits (83), Expect = 0.062
Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 17/136 (12%)
Query: 59 RVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYY---- 114
R +HL +P D + ++ +GL FGKV + + + +++A L++ S E+A +M ++
Sbjct: 1009 RFVHLDNLPEDGLQC-VLCVGLQFGKVDHHVFISNRNKAILQLDSPESAQSMYSFLKQNP 1067
Query: 115 ---------TPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVS---AVQSGSL 162
++P + V I++ E ++ L N ++ +Q + +V+ L
Sbjct: 1068 QNIGDHMLTCSLSPKIDLPEVQIEHDPELEKESPGLKNSPIDESEVQTATDSPSVKPNEL 1127
Query: 163 ALSGGPSNEGTVLPGQ 178
PS + L Q
Sbjct: 1128 EEESTPSIQTETLVQQ 1143
>gi|21626468 zinc finger protein 638 [Homo sapiens]
Length = 1978
Score = 43.9 bits (102), Expect = 4e-04
Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 13/120 (10%)
Query: 60 VLHLRKIPCD-VTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYY--TP 116
VL + ++P D TE ++ L PFGKV ++L++ + +A+LEM +EA ++ Y TP
Sbjct: 677 VLLITELPEDGCTEEDVRKLFQPFGKVNDVLIVPYRKEAYLEMEFKEAITAIMKYIETTP 736
Query: 117 ITPHLRSQPVYI---QYSNHRELKTDNLPNQ-------ARAQAALQAVSAVQSGSLALSG 166
+T +S + + + + ++E+K L ++ R A +AV V S S A +G
Sbjct: 737 LTIKGKSVKICVPGKKKAQNKEVKKKTLESKKVSASTLKRDADASKAVEIVTSTSAAKTG 796
Score = 36.6 bits (83), Expect = 0.062
Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 17/136 (12%)
Query: 59 RVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYY---- 114
R +HL +P D + ++ +GL FGKV + + + +++A L++ S E+A +M ++
Sbjct: 1009 RFVHLDNLPEDGLQC-VLCVGLQFGKVDHHVFISNRNKAILQLDSPESAQSMYSFLKQNP 1067
Query: 115 ---------TPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVS---AVQSGSL 162
++P + V I++ E ++ L N ++ +Q + +V+ L
Sbjct: 1068 QNIGDHMLTCSLSPKIDLPEVQIEHDPELEKESPGLKNSPIDESEVQTATDSPSVKPNEL 1127
Query: 163 ALSGGPSNEGTVLPGQ 178
PS + L Q
Sbjct: 1128 EEESTPSIQTETLVQQ 1143
>gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo
sapiens]
Length = 485
Score = 40.8 bits (94), Expect = 0.003
Identities = 85/343 (24%), Positives = 130/343 (37%), Gaps = 75/343 (21%)
Query: 22 SSGIINGPFTMNSSTPSTANGNDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLP 81
S+G +NG + + PST D K L + +IP ++ E ++ L
Sbjct: 29 SAGHMNG-LSHSPGNPSTIPMKDHDAIK-----------LFIGQIPRNLDEKDLKPLFEE 76
Query: 82 FGKVTNLLMLKG------KSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRE 135
FGK+ L +LK K AFL E+A L++Q S E
Sbjct: 77 FGKIYELTVLKDRFTGMHKGCAFLTYCERESA-------------LKAQ------SALHE 117
Query: 136 LKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTL 195
KT LP R A S + GS L PS + + G L +
Sbjct: 118 QKT--LPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGM----------LNKQQSE 165
Query: 196 EVLHQIFSKFGTVLKIITF---TKNNQFQALLQYADPVNAHYAKMALDG-QNIYNACCTL 251
+ + ++F FG + + N++ A ++Y+ A A AL G Q + A +L
Sbjct: 166 DDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSL 225
Query: 252 RIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAGF 311
+ F+ + DK R R+ GQ + PMA FGA G YA A
Sbjct: 226 VVKFA---------DTDKERTMRRMQQMA--GQMGMFNPMAIPFGAYG----AYAQAMQ- 269
Query: 312 APAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI 354
QA ++ A G L P+ ++A +MA +G+
Sbjct: 270 ------QQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGL 306
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 40.4 bits (93), Expect = 0.004
Identities = 33/88 (37%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 279 PTGD----GQPSLEPPMAAAFGAPGIIS--SPYAGAAGFAPAIGFPQATGLS----VPAV 328
P GD G+P P + A G PGII S G GF G P G S P +
Sbjct: 985 PRGDKGEAGRPG-PPGLPGAPGLPGIIKGVSGKPGPPGFMGIRGLPGLKGSSGITGFPGM 1043
Query: 329 PGALGPLTITSSAVTGRMAIPGASGIPG 356
PG G S + G +PGASG+PG
Sbjct: 1044 PGESG-----SQGIRGSPGLPGASGLPG 1066
Score = 35.4 bits (80), Expect = 0.14
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
Query: 288 EPPMAAAFGAPGIISSPYAGAAGFA-----PAI----GFPQATGLSVPAVPGALGPLTIT 338
EP G PG+ P G GF P + G P GL +PG GP +
Sbjct: 574 EPGKDGVPGLPGLPGLPGDGGQGFPGEKGLPGLPGEKGHPGPPGLPGNGLPGLPGPRGLP 633
Query: 339 SSAVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHG 374
G+ +PG G+PG+ + + + P P G
Sbjct: 634 GDK--GKDGLPGQQGLPGSKGITLPCIIPGSYGPSG 667
Score = 34.3 bits (77), Expect = 0.31
Identities = 34/108 (31%), Positives = 43/108 (39%), Gaps = 7/108 (6%)
Query: 279 PTGDGQPSLEPPMAAAFGAPGIISSPYA--GAAGFAPAIGFPQATGLSVPAVPGALGPLT 336
P G+ P G PG S PY G +G A GFP +G P G G
Sbjct: 796 PKGERGSPGTPGQVGQPGTPGS-SGPYGIKGKSGLPGAPGFPGISGH--PGKKGTRGKKG 852
Query: 337 ITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGD 384
S V + +PG G+PGN L+ +P GL L G G+
Sbjct: 853 PPGSIV--KKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGE 898
Score = 33.9 bits (76), Expect = 0.40
Identities = 29/81 (35%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 283 GQPSLEPP----MAAAFGAPGI--ISSPYAGAAGFAPAIGFPQATGLS-VPAVPGALGPL 335
G P L P M G PG+ I+ P GA GF A+G GL P PG LGP
Sbjct: 158 GDPVLAPGSFKGMKGDPGLPGLDGITGPQ-GAPGFPGAVGPAGPPGLQGPPGPPGPLGPD 216
Query: 336 TITSSAVTGRMAIPGASGIPG 356
G + G G+PG
Sbjct: 217 GNMGLGFQGEKGVKGDVGLPG 237
Score = 30.4 bits (67), Expect = 4.4
Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 19/76 (25%)
Query: 296 GAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGP---------------LTITSS 340
G PG+ G G G P LS VPGALGP TI ++
Sbjct: 368 GLPGLKGDE--GIQGLRGPSGVPGLPALS--GVPGALGPQGFPGLKGDQGNPGRTTIGAA 423
Query: 341 AVTGRMAIPGASGIPG 356
+ GR +PG G PG
Sbjct: 424 GLPGRDGLPGPPGPPG 439
Score = 30.0 bits (66), Expect = 5.8
Identities = 32/98 (32%), Positives = 35/98 (35%), Gaps = 21/98 (21%)
Query: 271 RDFTRLDLPTG-DGQPSLEPPMAAAFGAPGIISSP-YAGAAGFAPAIGFPQATGLS---- 324
R F L P G G P + P A G PG P G G G P G S
Sbjct: 1231 RGFPGLQGPAGLPGAPGISLPSLIA-GQPGDPGRPGLDGERGRPGPAGPPGPPGPSSNQG 1289
Query: 325 ------VPAVPGALGPLTITSSAVTGRMAIPGASGIPG 356
P +PG GP G IPG SG+PG
Sbjct: 1290 DTGDPGFPGIPGPKGP--------KGDQGIPGFSGLPG 1319
>gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo
sapiens]
Length = 484
Score = 40.4 bits (93), Expect = 0.004
Identities = 84/343 (24%), Positives = 131/343 (38%), Gaps = 76/343 (22%)
Query: 22 SSGIINGPFTMNSSTPSTANGNDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLP 81
S+G +NG + + PST D K L + +IP ++ E ++ L
Sbjct: 29 SAGHMNG-LSHSPGNPSTIPMKDHDAIK-----------LFIGQIPRNLDEKDLKPLFEE 76
Query: 82 FGKVTNLLMLKG------KSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRE 135
FGK+ L +LK K AFL E+A L++Q S E
Sbjct: 77 FGKIYELTVLKDRFTGMHKGCAFLTYCERESA-------------LKAQ------SALHE 117
Query: 136 LKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTL 195
KT LP R A S + GS L PS+ ++ + L +
Sbjct: 118 QKT--LPGMNRPIQVKPADSESRGGSSCLRQPPSHR-----------KLFVGMLNKQQSE 164
Query: 196 EVLHQIFSKFGTVLKIITF---TKNNQFQALLQYADPVNAHYAKMALDG-QNIYNACCTL 251
+ + ++F FG + + N++ A ++Y+ A A AL G Q + A +L
Sbjct: 165 DDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSL 224
Query: 252 RIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAGF 311
+ F+ + DK R R+ GQ + PMA FGA G YA A
Sbjct: 225 VVKFA---------DTDKERTMRRMQQMA--GQMGMFNPMAIPFGAYG----AYAQAMQ- 268
Query: 312 APAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI 354
QA ++ A G L P+ ++A +MA +G+
Sbjct: 269 ------QQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGL 305
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 40.4 bits (93), Expect = 0.004
Identities = 33/88 (37%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 279 PTGD----GQPSLEPPMAAAFGAPGIIS--SPYAGAAGFAPAIGFPQATGLS----VPAV 328
P GD G+P P + A G PGII S G GF G P G S P +
Sbjct: 984 PRGDKGEAGRPG-PPGLPGAPGLPGIIKGVSGKPGPPGFMGIRGLPGLKGSSGITGFPGM 1042
Query: 329 PGALGPLTITSSAVTGRMAIPGASGIPG 356
PG G S + G +PGASG+PG
Sbjct: 1043 PGESG-----SQGIRGSPGLPGASGLPG 1065
Score = 35.4 bits (80), Expect = 0.14
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
Query: 288 EPPMAAAFGAPGIISSPYAGAAGFA-----PAI----GFPQATGLSVPAVPGALGPLTIT 338
EP G PG+ P G GF P + G P GL +PG GP +
Sbjct: 573 EPGKDGVPGLPGLPGLPGDGGQGFPGEKGLPGLPGEKGHPGPPGLPGNGLPGLPGPRGLP 632
Query: 339 SSAVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHG 374
G+ +PG G+PG+ + + + P P G
Sbjct: 633 GDK--GKDGLPGQQGLPGSKGITLPCIIPGSYGPSG 666
Score = 34.3 bits (77), Expect = 0.31
Identities = 34/108 (31%), Positives = 43/108 (39%), Gaps = 7/108 (6%)
Query: 279 PTGDGQPSLEPPMAAAFGAPGIISSPYA--GAAGFAPAIGFPQATGLSVPAVPGALGPLT 336
P G+ P G PG S PY G +G A GFP +G P G G
Sbjct: 795 PKGERGSPGTPGQVGQPGTPGS-SGPYGIKGKSGLPGAPGFPGISGH--PGKKGTRGKKG 851
Query: 337 ITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGD 384
S V + +PG G+PGN L+ +P GL L G G+
Sbjct: 852 PPGSIV--KKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGE 897
Score = 33.9 bits (76), Expect = 0.40
Identities = 29/81 (35%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 283 GQPSLEPP----MAAAFGAPGI--ISSPYAGAAGFAPAIGFPQATGLS-VPAVPGALGPL 335
G P L P M G PG+ I+ P GA GF A+G GL P PG LGP
Sbjct: 157 GDPVLAPGSFKGMKGDPGLPGLDGITGPQ-GAPGFPGAVGPAGPPGLQGPPGPPGPLGPD 215
Query: 336 TITSSAVTGRMAIPGASGIPG 356
G + G G+PG
Sbjct: 216 GNMGLGFQGEKGVKGDVGLPG 236
Score = 30.4 bits (67), Expect = 4.4
Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 19/76 (25%)
Query: 296 GAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGP---------------LTITSS 340
G PG+ G G G P LS VPGALGP TI ++
Sbjct: 367 GLPGLKGDE--GIQGLRGPSGVPGLPALS--GVPGALGPQGFPGLKGDQGNPGRTTIGAA 422
Query: 341 AVTGRMAIPGASGIPG 356
+ GR +PG G PG
Sbjct: 423 GLPGRDGLPGPPGPPG 438
Score = 30.0 bits (66), Expect = 5.8
Identities = 32/98 (32%), Positives = 35/98 (35%), Gaps = 21/98 (21%)
Query: 271 RDFTRLDLPTG-DGQPSLEPPMAAAFGAPGIISSP-YAGAAGFAPAIGFPQATGLS---- 324
R F L P G G P + P A G PG P G G G P G S
Sbjct: 1230 RGFPGLQGPAGLPGAPGISLPSLIA-GQPGDPGRPGLDGERGRPGPAGPPGPPGPSSNQG 1288
Query: 325 ------VPAVPGALGPLTITSSAVTGRMAIPGASGIPG 356
P +PG GP G IPG SG+PG
Sbjct: 1289 DTGDPGFPGIPGPKGP--------KGDQGIPGFSGLPG 1318
>gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 39.3 bits (90), Expect = 0.009
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 11/70 (15%)
Query: 184 IIIENLFYPVTLE----VLHQI-------FSKFGTVLKIITFTKNNQFQALLQYADPVNA 232
+II+N+F+P+ E VL++I SKFG + K++ F ++ A + + DP A
Sbjct: 266 VIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEA 325
Query: 233 HYAKMALDGQ 242
Y LDG+
Sbjct: 326 DYCIQTLDGR 335
>gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 39.3 bits (90), Expect = 0.009
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 11/70 (15%)
Query: 184 IIIENLFYPVTLE----VLHQI-------FSKFGTVLKIITFTKNNQFQALLQYADPVNA 232
+II+N+F+P+ E VL++I SKFG + K++ F ++ A + + DP A
Sbjct: 266 VIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEA 325
Query: 233 HYAKMALDGQ 242
Y LDG+
Sbjct: 326 DYCIQTLDGR 335
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 38.9 bits (89), Expect = 0.012
Identities = 37/110 (33%), Positives = 43/110 (39%), Gaps = 14/110 (12%)
Query: 279 PTGDGQPSLEPPMA--AAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPA-VPGALGPL 335
P DG P P G PG+ SP G G IG P TG PA PG GP
Sbjct: 590 PGLDGNPGAPGPRGPKGERGLPGVHGSP--GDIG-PQGIGIPGRTGAQGPAGEPGIQGP- 645
Query: 336 TITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDV 385
G +PG G PGN + + P L P G I + GD+
Sbjct: 646 -------RGLPGLPGTPGTPGNDGVPGRDGKPGLPGPPGDPIALPLLGDI 688
Score = 33.5 bits (75), Expect = 0.52
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 276 LDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPL 335
+++P+ G P P G PG + P GA G GFP G PA P +
Sbjct: 835 VNVPSYPGPPGPPGPK----GDPGPVGEP--GAMGLPGLEGFPGVKGDRGPAGPPGI--- 885
Query: 336 TITSSAVTGRMAIPGASGIPG 356
+ ++G+ PG G+PG
Sbjct: 886 ----AGMSGKPGAPGPPGVPG 902
>gi|4759156 small nuclear ribonucleoprotein polypeptide A [Homo
sapiens]
Length = 282
Score = 38.5 bits (88), Expect = 0.016
Identities = 57/249 (22%), Positives = 98/249 (39%), Gaps = 35/249 (14%)
Query: 198 LHQIFSKFGTVLKI-ITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFS 256
L+ IFS+FG +L I ++ + + QA + + + +A A ++ G Y+ +RI ++
Sbjct: 30 LYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK--PMRIQYA 87
Query: 257 KLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIG 316
K S + F D +P + A G ++P GA P G
Sbjct: 88 KTDSDIIA---KMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQ-GPVPG 143
Query: 317 FPQATGLSVPAV------------------PGALGPLTITSSAVTGRMAIPG-------A 351
P T P + P L P I A+ + +PG
Sbjct: 144 MPPMT--QAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPL 201
Query: 352 SGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLA 411
S P N +L +TNL P+ L +LF + V+++ + + A V+ + QA A
Sbjct: 202 SENPPNHILFLTNL-PEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAA 260
Query: 412 MNHLSGQRL 420
+ L G ++
Sbjct: 261 RDALQGFKI 269
>gi|224028246 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 38.1 bits (87), Expect = 0.021
Identities = 52/216 (24%), Positives = 84/216 (38%), Gaps = 32/216 (14%)
Query: 29 PFTMNSSTPSTANGN---DSKKFKRDRPPCSPSRV-LHLRKIPCDVTEAEIISLGLPFGK 84
P N S+ N D K F++ R L + +P D+TE E+ L +GK
Sbjct: 40 PIPANGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGK 99
Query: 85 VTNLLMLKGKSQAFLEM----ASEEAAVTMVNYYTPITPHLRSQPVYIQYSNH-RELKTD 139
+ + K K F+ + +E A V + N LR + + ++++ H L
Sbjct: 100 AGEVFIHKDKGFGFIRLETRTLAEIAKVELDNM------PLRGKQLRVRFACHSASLTVR 153
Query: 140 NLPNQARAQAALQAVSAVQSGSLAL-----SGGPSNEGTVLPGQSPVLR----------I 184
NLP + +A S A+ G PS +G V P R
Sbjct: 154 NLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSF 213
Query: 185 IIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQF 220
++ PVT+E + Q+ + G K++ KN QF
Sbjct: 214 LLTTFPRPVTVEPMDQLDDEEGLPEKLV--IKNQQF 247
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,046,781
Number of Sequences: 37866
Number of extensions: 996337
Number of successful extensions: 4280
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 165
Number of HSP's that attempted gapping in prelim test: 3599
Number of HSP's gapped (non-prelim): 729
length of query: 552
length of database: 18,247,518
effective HSP length: 107
effective length of query: 445
effective length of database: 14,195,856
effective search space: 6317155920
effective search space used: 6317155920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.