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Search of human proteins with 124248546
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|124248546 HHIP-like 2 [Homo sapiens]
(724 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|124248546 HHIP-like 2 [Homo sapiens] 1515 0.0
gi|187936955 HHIP-like protein 1 isoform a [Homo sapiens] 795 0.0
gi|187936953 HHIP-like protein 1 isoform b [Homo sapiens] 760 0.0
gi|20143973 hedgehog-interacting protein [Homo sapiens] 270 3e-72
gi|239750672 PREDICTED: hypothetical protein [Homo sapiens] 37 0.049
gi|239744982 PREDICTED: hypothetical protein [Homo sapiens] 37 0.049
gi|239756174 PREDICTED: hypothetical protein [Homo sapiens] 36 0.14
gi|6912246 CD3E antigen, epsilon polypeptide associated protein ... 35 0.19
gi|14719402 homolog of yeast ribosome biogenesis regulatory prot... 34 0.55
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 34 0.55
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 34 0.55
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 34 0.55
gi|62243658 PI-3-kinase-related kinase SMG-1 [Homo sapiens] 34 0.55
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 34 0.55
gi|109809739 La ribonucleoprotein domain family, member 7 [Homo ... 32 1.6
gi|109809741 La ribonucleoprotein domain family, member 7 [Homo ... 32 1.6
gi|154350220 DNA polymerase iota [Homo sapiens] 32 2.1
gi|27734897 hypothetical protein LOC203111 [Homo sapiens] 32 2.1
gi|33188443 microfilament and actin filament cross-linker protei... 32 2.7
gi|33188445 microfilament and actin filament cross-linker protei... 32 2.7
gi|54792740 transmembrane and coiled-coil domain family 2 [Homo ... 32 2.7
gi|145580626 E2F transcription factor 7 [Homo sapiens] 32 2.7
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens] 32 2.7
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens] 32 2.7
gi|239755394 PREDICTED: hypothetical protein [Homo sapiens] 31 3.5
gi|239744215 PREDICTED: hypothetical protein [Homo sapiens] 31 3.5
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 31 4.6
gi|60097902 filaggrin [Homo sapiens] 30 6.0
gi|224809302 xeroderma pigmentosum, complementation group C isof... 30 6.0
gi|224809295 xeroderma pigmentosum, complementation group C isof... 30 6.0
>gi|124248546 HHIP-like 2 [Homo sapiens]
Length = 724
Score = 1515 bits (3922), Expect = 0.0
Identities = 724/724 (100%), Positives = 724/724 (100%)
Query: 1 MLRTSTPNLCGGLHCRAPWLSSGILCLCLIFLLGQVGLLQGHPQCLDYGPPFQPPLHLEF 60
MLRTSTPNLCGGLHCRAPWLSSGILCLCLIFLLGQVGLLQGHPQCLDYGPPFQPPLHLEF
Sbjct: 1 MLRTSTPNLCGGLHCRAPWLSSGILCLCLIFLLGQVGLLQGHPQCLDYGPPFQPPLHLEF 60
Query: 61 CSDYESFGCCDQHKDRRIAARYWDIMEYFDLKRHELCGDYIKDILCQECSPYAAHLYDAE 120
CSDYESFGCCDQHKDRRIAARYWDIMEYFDLKRHELCGDYIKDILCQECSPYAAHLYDAE
Sbjct: 61 CSDYESFGCCDQHKDRRIAARYWDIMEYFDLKRHELCGDYIKDILCQECSPYAAHLYDAE 120
Query: 121 NTQTPLRNLPGLCSDYCSAFHSNCHSAISLLTNDRGLQESHGRDGTRFCHLLDLPDKDYC 180
NTQTPLRNLPGLCSDYCSAFHSNCHSAISLLTNDRGLQESHGRDGTRFCHLLDLPDKDYC
Sbjct: 121 NTQTPLRNLPGLCSDYCSAFHSNCHSAISLLTNDRGLQESHGRDGTRFCHLLDLPDKDYC 180
Query: 181 FPNVLRNDYLNRHLGMVAQDPQGCLQLCLSEVANGLRNPVSMVHAGDGTHRFFVAEQVGV 240
FPNVLRNDYLNRHLGMVAQDPQGCLQLCLSEVANGLRNPVSMVHAGDGTHRFFVAEQVGV
Sbjct: 181 FPNVLRNDYLNRHLGMVAQDPQGCLQLCLSEVANGLRNPVSMVHAGDGTHRFFVAEQVGV 240
Query: 241 VWVYLPDGSRLEQPFLDLKNIVLTTPWIGDERGFLGLAFHPKFRHNRKFYIYYSCLDKKK 300
VWVYLPDGSRLEQPFLDLKNIVLTTPWIGDERGFLGLAFHPKFRHNRKFYIYYSCLDKKK
Sbjct: 241 VWVYLPDGSRLEQPFLDLKNIVLTTPWIGDERGFLGLAFHPKFRHNRKFYIYYSCLDKKK 300
Query: 301 VEKIRISEMKVSRADPNKADLKSERVILEIEEPASNHNGGQLLFGLDGYMYIFTGDGGQA 360
VEKIRISEMKVSRADPNKADLKSERVILEIEEPASNHNGGQLLFGLDGYMYIFTGDGGQA
Sbjct: 301 VEKIRISEMKVSRADPNKADLKSERVILEIEEPASNHNGGQLLFGLDGYMYIFTGDGGQA 360
Query: 361 GDPFGLFGNAQNKSSLLGKVLRIDVNRAGSHGKRYRVPSDNPFVSEPGAHPAIYAYGIRN 420
GDPFGLFGNAQNKSSLLGKVLRIDVNRAGSHGKRYRVPSDNPFVSEPGAHPAIYAYGIRN
Sbjct: 361 GDPFGLFGNAQNKSSLLGKVLRIDVNRAGSHGKRYRVPSDNPFVSEPGAHPAIYAYGIRN 420
Query: 421 MWRCAVDRGDPITRQGRGRIFCGDVGQNRFEEVDLILKGGNYGWRAKEGFACYDKKLCHN 480
MWRCAVDRGDPITRQGRGRIFCGDVGQNRFEEVDLILKGGNYGWRAKEGFACYDKKLCHN
Sbjct: 421 MWRCAVDRGDPITRQGRGRIFCGDVGQNRFEEVDLILKGGNYGWRAKEGFACYDKKLCHN 480
Query: 481 ASLDDVLPIYAYGHAVGKSVTGGYVYRGCESPNLNGLYIFGDFMSGRLMALQEDRKNKKW 540
ASLDDVLPIYAYGHAVGKSVTGGYVYRGCESPNLNGLYIFGDFMSGRLMALQEDRKNKKW
Sbjct: 481 ASLDDVLPIYAYGHAVGKSVTGGYVYRGCESPNLNGLYIFGDFMSGRLMALQEDRKNKKW 540
Query: 541 KKQDLCLGSTTSCAFPGLISTHSKFIISFAEDEAGELYFLATSYPSAYAPRGSIYKFVDP 600
KKQDLCLGSTTSCAFPGLISTHSKFIISFAEDEAGELYFLATSYPSAYAPRGSIYKFVDP
Sbjct: 541 KKQDLCLGSTTSCAFPGLISTHSKFIISFAEDEAGELYFLATSYPSAYAPRGSIYKFVDP 600
Query: 601 SRRAPPGKCKYKPVPVRTKSKRIPFRPLAKTVLDLLKEQSEKAARKSSSATLASGPAQGL 660
SRRAPPGKCKYKPVPVRTKSKRIPFRPLAKTVLDLLKEQSEKAARKSSSATLASGPAQGL
Sbjct: 601 SRRAPPGKCKYKPVPVRTKSKRIPFRPLAKTVLDLLKEQSEKAARKSSSATLASGPAQGL 660
Query: 661 SEKGSSKKLASPTSSKNTLRGPGTKKKARVGPHVRQGKRRKSLKSHSGRMRPSAEQKRAG 720
SEKGSSKKLASPTSSKNTLRGPGTKKKARVGPHVRQGKRRKSLKSHSGRMRPSAEQKRAG
Sbjct: 661 SEKGSSKKLASPTSSKNTLRGPGTKKKARVGPHVRQGKRRKSLKSHSGRMRPSAEQKRAG 720
Query: 721 RSLP 724
RSLP
Sbjct: 721 RSLP 724
>gi|187936955 HHIP-like protein 1 isoform a [Homo sapiens]
Length = 782
Score = 795 bits (2054), Expect = 0.0
Identities = 386/676 (57%), Positives = 473/676 (69%), Gaps = 14/676 (2%)
Query: 42 HPQCLDYGPPFQPPLHLEFCSDYESFGCCDQHKDRRIAARYWDIMEYFDLKRHELCGDYI 101
HPQCLD+ PPF+P L C+ Y FGCCD+ +D + R+W + D C Y
Sbjct: 20 HPQCLDFRPPFRPTQPLRLCAQYSDFGCCDEGRDAELTRRFWALASRVDAAEWAACAGYA 79
Query: 102 KDILCQECSPYAAHLYDAENTQTPLRNLPGLCSDYCSAFHSNCHSAISLLTNDRGLQESH 161
+D+LCQECSPYAAHLYDAE+ TPLR +PGLC DYC C L+ D+ L
Sbjct: 80 RDLLCQECSPYAAHLYDAEDPFTPLRTVPGLCQDYCLDMWHKCRGLFRHLSTDQELWALE 139
Query: 162 GRDGTRFCHLLDLPDKDYCFPNVLRNDYLNRHLGMVAQDPQGCLQLCLSEVANGLRNPVS 221
G + RFC L L D DYCFP +L N LN +LG V D +GCLQLCL EVANGLRNPV+
Sbjct: 140 G-NLARFCRYLSLDDTDYCFPYLLVNKNLNSNLGHVVADAKGCLQLCLEEVANGLRNPVA 198
Query: 222 MVHAGDGTHRFFVAEQVGVVWVYLPDGSRLEQPFLDLKNIVLTTPWIGDERGFLGLAFHP 281
MVHA DGTHRFFVAEQVG+VW YLPD SRL +PFL++ +VLT+PW GDERGFLG+AFHP
Sbjct: 199 MVHARDGTHRFFVAEQVGLVWAYLPDRSRLGKPFLNISRVVLTSPWEGDERGFLGIAFHP 258
Query: 282 KFRHNRKFYIYYSCLDKKKVEKIRISEMKVSRADPNKADLKSERVILEIEEPASNHNGGQ 341
F+HNR+ Y+YYS + + E IRISE +VS D N D SER+ILE++EPASNHNGGQ
Sbjct: 259 SFQHNRRLYVYYS-VGIRSSEWIRISEFRVSEDDENAVDHSSERIILEVKEPASNHNGGQ 317
Query: 342 LLFGLDGYMYIFTGDGGQAGDPFGLFGNAQNKSSLLGKVLRIDVNRAGSHGKRYRVPSDN 401
LLFG DGY+YIFTGDGG AGDPFG FGNAQNKS+LLGKVLRIDV+R G Y +P DN
Sbjct: 318 LLFGDDGYLYIFTGDGGMAGDPFGTFGNAQNKSALLGKVLRIDVDRK-ERGLPYGIPPDN 376
Query: 402 PFVSEPGAHPAIYAYGIRNMWRCAVDRGDPITRQGRGRIFCGDVGQNRFEEVDLILKGGN 461
PFV +P A P +YA G+RNMWRC+ DRGDP + GRGR+FCGDVGQN+FEEVD++ +GGN
Sbjct: 377 PFVGDPAAQPEVYALGVRNMWRCSFDRGDPSSGTGRGRLFCGDVGQNKFEEVDVVERGGN 436
Query: 462 YGWRAKEGFACYDKKLCHNASLDDVLPIYAYGHAVGKSVTGGYVYRGCESPNLNGLYIFG 521
YGWRA+EGF CYD+ LC N SL+D+LPI+AY H VGKSVTGGYVYRGCE PNLNGLYIFG
Sbjct: 437 YGWRAREGFECYDRSLCANTSLNDLLPIFAYPHTVGKSVTGGYVYRGCEYPNLNGLYIFG 496
Query: 522 DFMSGRLMALQEDRKNKKWKKQDLCLGSTTSCAFPGLISTHSKFIISFAEDEAGELYFLA 581
DFMSGRLM+LQE+ +W+ ++C+G +C FPGLI+ + +IISF EDEAGELYF++
Sbjct: 497 DFMSGRLMSLQENPGTGQWQYSEICMGHGQTCEFPGLINNYYPYIISFGEDEAGELYFMS 556
Query: 582 TSYPSAYAPRGSIYKFVDPSRRAPPGKCKYKPVPVRTKSKRIPFRPLAKTVLDLLKEQSE 641
T PSA APRG +YK +D SRRAPPGKC+ +P V+ +S+ IPF P K + +
Sbjct: 557 TGEPSATAPRGVVYKIIDASRRAPPGKCQIQPAQVKIRSRLIPFVPKEK-FIPKTRSTPR 615
Query: 642 KAARKSSSATLASGPAQGLSEKGSSKKLASPTSSKNTLRGPGTKKKARVGPHVRQGK--- 698
AR + A P + + + A PT + RG G +++ R+ R +
Sbjct: 616 PTARAPTRAPRRGRPT--AAPPAPTPRPARPTQQPGSRRG-GGRRRGRLNSASRAFRDGE 672
Query: 699 ----RRKSLKSHSGRM 710
R L S SGR+
Sbjct: 673 VRLVRPAGLSSGSGRV 688
>gi|187936953 HHIP-like protein 1 isoform b [Homo sapiens]
Length = 608
Score = 760 bits (1963), Expect = 0.0
Identities = 359/578 (62%), Positives = 428/578 (74%), Gaps = 10/578 (1%)
Query: 42 HPQCLDYGPPFQPPLHLEFCSDYESFGCCDQHKDRRIAARYWDIMEYFDLKRHELCGDYI 101
HPQCLD+ PPF+P L C+ Y FGCCD+ +D + R+W + D C Y
Sbjct: 20 HPQCLDFRPPFRPTQPLRLCAQYSDFGCCDEGRDAELTRRFWALASRVDAAEWAACAGYA 79
Query: 102 KDILCQECSPYAAHLYDAENTQTPLRNLPGLCSDYCSAFHSNCHSAISLLTNDRGLQESH 161
+D+LCQECSPYAAHLYDAE+ TPLR +PGLC DYC C L+ D+ L
Sbjct: 80 RDLLCQECSPYAAHLYDAEDPFTPLRTVPGLCQDYCLDMWHKCRGLFRHLSTDQELWALE 139
Query: 162 GRDGTRFCHLLDLPDKDYCFPNVLRNDYLNRHLGMVAQDPQGCLQLCLSEVANGLRNPVS 221
G + RFC L L D DYCFP +L N LN +LG V D +GCLQLCL EVANGLRNPV+
Sbjct: 140 G-NLARFCRYLSLDDTDYCFPYLLVNKNLNSNLGHVVADAKGCLQLCLEEVANGLRNPVA 198
Query: 222 MVHAGDGTHRFFVAEQVGVVWVYLPDGSRLEQPFLDLKNIVLTTPWIGDERGFLGLAFHP 281
MVHA DGTHRFFVAEQVG+VW YLPD SRL +PFL++ +VLT+PW GDERGFLG+AFHP
Sbjct: 199 MVHARDGTHRFFVAEQVGLVWAYLPDRSRLGKPFLNISRVVLTSPWEGDERGFLGIAFHP 258
Query: 282 KFRHNRKFYIYYSCLDKKKVEKIRISEMKVSRADPNKADLKSERVILEIEEPASNHNGGQ 341
F+HNR+ Y+YYS + + E IRISE +VS D N D SER+ILE++EPASNHNGGQ
Sbjct: 259 SFQHNRRLYVYYS-VGIRSSEWIRISEFRVSEDDENAVDHSSERIILEVKEPASNHNGGQ 317
Query: 342 LLFGLDGYMYIFTGDGGQAGDPFGLFGNAQNKSSLLGKVLRIDVNRAGSHGKRYRVPSDN 401
LLFG DGY+YIFTGDGG AGDPFG FGNAQNKS+LLGKVLRIDV+R G Y +P DN
Sbjct: 318 LLFGDDGYLYIFTGDGGMAGDPFGTFGNAQNKSALLGKVLRIDVDRK-ERGLPYGIPPDN 376
Query: 402 PFVSEPGAHPAIYAYGIRNMWRCAVDRGDPITRQGRGRIFCGDVGQNRFEEVDLILKGGN 461
PFV +P A P +YA G+RNMWRC+ DRGDP + GRGR+FCGDVGQN+FEEVD++ +GGN
Sbjct: 377 PFVGDPAAQPEVYALGVRNMWRCSFDRGDPSSGTGRGRLFCGDVGQNKFEEVDVVERGGN 436
Query: 462 YGWRAKEGFACYDKKLCHNASLDDVLPIYAYGHAVGKSVTGGYVYRGCESPNLNGLYIFG 521
YGWRA+EGF CYD+ LC N SL+D+LPI+AY H VGKSVTGGYVYRGCE PNLNGLYIFG
Sbjct: 437 YGWRAREGFECYDRSLCANTSLNDLLPIFAYPHTVGKSVTGGYVYRGCEYPNLNGLYIFG 496
Query: 522 DFMSGRLMALQEDRKNKKWKKQDLCLGSTTSCAFPGLISTHSKFIISFAEDEAGELYFLA 581
DFMSGRLM+LQE+ +W+ ++C+G +C FPGLI+ + +IISF EDEAGELYF++
Sbjct: 497 DFMSGRLMSLQENPGTGQWQYSEICMGHGQTCEFPGLINNYYPYIISFGEDEAGELYFMS 556
Query: 582 TSYPSAYAPRGSIYKFVDPS----RRAPPGKCKYKPVP 615
T PSA APRG +YK +D S R A PG Y P P
Sbjct: 557 TGEPSATAPRGVVYKIIDASSCKARSAMPG---YVPAP 591
>gi|20143973 hedgehog-interacting protein [Homo sapiens]
Length = 700
Score = 270 bits (691), Expect = 3e-72
Identities = 180/552 (32%), Positives = 269/552 (48%), Gaps = 65/552 (11%)
Query: 89 FDLKRHELCGDYIKDILCQECSPYAAHLYDAENTQTPLRNL--PGLCSDYCSAFHSNCHS 146
F + + CG +++I C CSP++ L+ + + R+L P LC DYC F C
Sbjct: 95 FSVTNNTECGKLLEEIKCALCSPHSQSLFHSPEREVLERDLVLPLLCKDYCKEFFYTCRG 154
Query: 147 AISLLTNDRGLQESHGRDGTRFCHLLDLPDKDYCFPNVLR-------NDYLNRHLG---- 195
I G ++ + FC D CFP+ R ++YL++
Sbjct: 155 HIP------GFLQTTADE---FCFYYARKDGGLCFPDFPRKQVRGPASNYLDQMEEYDKV 205
Query: 196 --MVAQDPQGCLQLCLSEVANGLRNPVSMVHAGDGTHRFFVAEQVGVVWVYLPDGSRLEQ 253
+ + C C+ EV +GLR PV +H+GDG+ R F+ E+ G V + P+G ++
Sbjct: 206 EEISRKHKHNCF--CIQEVVSGLRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKE 263
Query: 254 PFLDLKNIVLTTPWIGDERGFLGLAFHPKFRHNRKFYIYYSCLDKKKV-----EKIRISE 308
P+LD+ +V + GDERG L LAFHP ++ N K Y+ Y+ ++ +R+ E
Sbjct: 264 PYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVE 323
Query: 309 MKVSRADPNKADLKSERVILEIEEPASNHNGGQLLFGLDGYMYIFTGDGGQAGDPFGLFG 368
VSR +P++ DL++ RV LE+ E H GGQLLFG DG++YI GDG D
Sbjct: 324 YTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDD---ME 380
Query: 369 NAQNKSSLLGKVLRIDVNRAGSHGKRYRVPSDNPFVSEPGAHPAIYAYGIRNMWRCAVDR 428
S G VLR+DV+ Y +P NP + P ++A+G+ + RCAVDR
Sbjct: 381 EMDGLSDFTGSVLRLDVD-TDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDR 439
Query: 429 GDPITRQGRGRIFCGDV-GQNRFE-EVDLILKGGNYGWRAKEGFACYDKKLCHNASLDDV 486
P I C D G+NR + I+KG +Y S +
Sbjct: 440 -HPTDININLTILCSDSNGKNRSSARILQIIKGKDY------------------ESEPSL 480
Query: 487 LPIYAYGHAVGKSVTGGYVYRGCESPNLNGLYIFGDFMSGRLMALQEDRKNKKWKKQDLC 546
L + + + GG+VYRGC+S L G Y+FGD +G + LQ+ K+W+++ LC
Sbjct: 481 LEFKPFSNG---PLVGGFVYRGCQSERLYGSYVFGD-RNGNFLTLQQSPVTKQWQEKPLC 536
Query: 547 LGSTTSCAFPGLISTHSKFIISFAEDEAGELYFLATSYPSAYAPRGSIYKFVDPSRRAPP 606
LG++ SC G S H I+ F EDE GE+Y L++S G +YK VDP R P
Sbjct: 537 LGTSGSCR--GYFSGH---ILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVDPKRPLMP 591
Query: 607 GKCKYKPVPVRT 618
+C+ P +T
Sbjct: 592 EECRATVQPAQT 603
>gi|239750672 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 37.4 bits (85), Expect = 0.049
Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 16/132 (12%)
Query: 594 IYKFVDPSRRAPPGKCKYKPVPVRTKSKRIPFRPLAKTVLDLLKEQSEKAARKSSSATLA 653
+Y+ + RRA +C+ + + + KR F PL+ AA +++A A
Sbjct: 150 LYEAYEAERRAKLQQCRAERERIMREEKRRLFTPLS------------PAAAAAAAAAAA 197
Query: 654 SGPAQGLSEKGSSKKLASPTSSKNTLRGPGTKKKARVGP---HVRQGKRRKSLKSHSGRM 710
S P+ G S SS L + + + + + AR P R G++ SL S S R
Sbjct: 198 SAPSAGSSSSCSSASLPASPAPRAARKASPSPSSARTQPPPAGSRTGRKSHSLDSLS-RR 256
Query: 711 RPSAEQKRAGRS 722
R A +G S
Sbjct: 257 REGALSSESGAS 268
>gi|239744982 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 37.4 bits (85), Expect = 0.049
Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 16/132 (12%)
Query: 594 IYKFVDPSRRAPPGKCKYKPVPVRTKSKRIPFRPLAKTVLDLLKEQSEKAARKSSSATLA 653
+Y+ + RRA +C+ + + + KR F PL+ AA +++A A
Sbjct: 150 LYEAYEAERRAKLQQCRAERERIMREEKRRLFTPLS------------PAAAAAAAAAAA 197
Query: 654 SGPAQGLSEKGSSKKLASPTSSKNTLRGPGTKKKARVGP---HVRQGKRRKSLKSHSGRM 710
S P+ G S SS L + + + + + AR P R G++ SL S S R
Sbjct: 198 SAPSAGSSSSCSSASLPASPAPRAARKASPSPSSARTQPPPAGSRTGRKSHSLDSLS-RR 256
Query: 711 RPSAEQKRAGRS 722
R A +G S
Sbjct: 257 REGALSSESGAS 268
>gi|239756174 PREDICTED: hypothetical protein [Homo sapiens]
Length = 625
Score = 35.8 bits (81), Expect = 0.14
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 594 IYKFVDPSRRAPPGKCKYKPVPVRTKSKRIPFRPLAKTVLDLLKEQSEKAARKSSSATLA 653
+Y+ + RRA +C+ + + + KR F PL+ S +A SSS + A
Sbjct: 150 LYEAYEAERRAKLQQCRAERDRIMREEKRRLFTPLSPAAAAAAAAASAPSAGSSSSCSSA 209
Query: 654 SGPAQGLSEKGSSKKLASPTSSKNTLRGPGTKKKARVGPHVRQGKRRKSLKSHSGRMRPS 713
S PA + + + K SP+S++ G+ R G++ SL S S R R
Sbjct: 210 SLPASP-APRAARKASPSPSSARTQPPPAGS----------RTGRKSHSLDSLS-RRREG 257
Query: 714 AEQKRAGRS 722
A +G S
Sbjct: 258 ALSSESGAS 266
>gi|6912246 CD3E antigen, epsilon polypeptide associated protein
[Homo sapiens]
Length = 510
Score = 35.4 bits (80), Expect = 0.19
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 590 PRGSIYKFVDPSRRAPPGKCKYKPVPVRTKSKRIPFRPLAKTVLDLLKEQSEKAARKSSS 649
P G ++ R+ P GK ++P K ++I PL TVL K+ RK
Sbjct: 241 PLGVLFPSTTKKRKKPKGKETFEPEDKTVKQEQINTEPLEDTVLSPTKK------RKRQK 294
Query: 650 ATLASGPAQGLSEKGSSKKLASPTSSKNTLRGPGTKKKAR 689
T P +G++ + + P L P TKK+ +
Sbjct: 295 GTEGMEPEEGVTVESQPQVKVEPLEEAIPL--PPTKKRKK 332
>gi|14719402 homolog of yeast ribosome biogenesis regulatory protein
RRS1 [Homo sapiens]
Length = 365
Score = 33.9 bits (76), Expect = 0.55
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 10/116 (8%)
Query: 617 RTKSKRIPFRPL-------AKTVLDLLKEQSEKAARKS-SSATLASGPAQGLSEKGSSKK 668
R K+ F+PL K L+LL+ + K + + AT + E +K
Sbjct: 246 RGSGKKRKFQPLFGDFAAEKKNQLELLRVMNSKKPQLDVTRATNKQMREEDQEEAAKRRK 305
Query: 669 LASPTSSKNTLRGPGTKKKARVGPHVRQGKRRKSLKSHSGRMRPSAEQKRAGRSLP 724
++ K +GPG K+K GP + GKR+ L P KR G P
Sbjct: 306 MSQKGKRKGGRQGPGGKRKG--GPPSQGGKRKGGLGGKMNSGPPGLGGKRKGGQRP 359
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 33.9 bits (76), Expect = 0.55
Identities = 39/135 (28%), Positives = 52/135 (38%), Gaps = 24/135 (17%)
Query: 581 ATSYPSAY--APRGS--IYKFVDPSRRAPPGKCKYKPVPVRTKSKRIPFRPLAKTVLDLL 636
A S P AY APRGS Y + RA G KY S R+P RP +
Sbjct: 106 ADSEPDAYTSAPRGSGPTYCAGAGNSRAGGGLTKYNSAH---SSSRVP-RPRLPS----- 156
Query: 637 KEQSEKAARKSSSATLASGPAQGLSEKGSSKKLASPTSSKNTLRGPGTKKKARVGPHVRQ 696
R+ +S L GP + +G L ++ T RGP ++ GPH
Sbjct: 157 -------QRRGASCGLGPGPESRAARQG----LGGRSARARTRRGPHRTRRPEPGPHHTG 205
Query: 697 GKRRKSLKSHSGRMR 711
++ L GR R
Sbjct: 206 ARQAGPLPGTRGRTR 220
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 33.9 bits (76), Expect = 0.55
Identities = 39/135 (28%), Positives = 52/135 (38%), Gaps = 24/135 (17%)
Query: 581 ATSYPSAY--APRGS--IYKFVDPSRRAPPGKCKYKPVPVRTKSKRIPFRPLAKTVLDLL 636
A S P AY APRGS Y + RA G KY S R+P RP +
Sbjct: 106 ADSEPDAYTSAPRGSGPTYCAGAGNSRAGGGLTKYNSAH---SSSRVP-RPRLPS----- 156
Query: 637 KEQSEKAARKSSSATLASGPAQGLSEKGSSKKLASPTSSKNTLRGPGTKKKARVGPHVRQ 696
R+ +S L GP + +G L ++ T RGP ++ GPH
Sbjct: 157 -------QRRGASCGLGPGPESRAARQG----LGGRSARARTRRGPHRTRRPEPGPHHTG 205
Query: 697 GKRRKSLKSHSGRMR 711
++ L GR R
Sbjct: 206 ARQAGPLPGTRGRTR 220
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 33.9 bits (76), Expect = 0.55
Identities = 39/135 (28%), Positives = 52/135 (38%), Gaps = 24/135 (17%)
Query: 581 ATSYPSAY--APRGS--IYKFVDPSRRAPPGKCKYKPVPVRTKSKRIPFRPLAKTVLDLL 636
A S P AY APRGS Y + RA G KY S R+P RP +
Sbjct: 106 ADSEPDAYTSAPRGSGPTYCAGAGNSRAGGGLTKYNSAH---SSSRVP-RPRLPS----- 156
Query: 637 KEQSEKAARKSSSATLASGPAQGLSEKGSSKKLASPTSSKNTLRGPGTKKKARVGPHVRQ 696
R+ +S L GP + +G L ++ T RGP ++ GPH
Sbjct: 157 -------QRRGASCGLGPGPESRAARQG----LGGRSARARTRRGPHRTRRPEPGPHHTG 205
Query: 697 GKRRKSLKSHSGRMR 711
++ L GR R
Sbjct: 206 ARQAGPLPGTRGRTR 220
>gi|62243658 PI-3-kinase-related kinase SMG-1 [Homo sapiens]
Length = 3661
Score = 33.9 bits (76), Expect = 0.55
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 378 GKVLRIDVNRAGSHGKRYRVPSDNPFVSEPGAHPAIYAYGIRNMWRCAVDRGDPITRQGR 437
G+V+ ID N GK RVP PF A+ G+ ++R + ++ I R+GR
Sbjct: 2348 GEVVHIDYNVCFEKGKSLRVPEKVPFRMTQNIETALGVTGVEGVFRLSCEQVLHIMRRGR 2407
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 33.9 bits (76), Expect = 0.55
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 16/120 (13%)
Query: 600 PSRRAPPGKCKYKPVPVRTKSKRIPFRPLAKTVLDLLKEQSEKAARKSSSATLASGPAQG 659
P+R P K K +P + S+ P P Q K +R +SS+ + PA
Sbjct: 399 PTRDRSPPKSPEK-LPQSSSSESSPPSP-----------QPTKVSRHASSSPESPKPAPA 446
Query: 660 LSEKGSSKKLASPTSSKNTLRGPGTKKKARVG-PHVRQGKRRKSLKSHSGRMRPSAEQKR 718
GS ++++S +SKN G + K+ P R G+ R + GR R KR
Sbjct: 447 ---PGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKR 503
Score = 30.0 bits (66), Expect = 7.9
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
Query: 601 SRRAPPGKCKYKPVPVRTKSK-RIPFR---PLAKTVLDLLKEQSEKAARKSSSATLAS-G 655
SR A G+ + R +S+ R P R ++T R+S S T A G
Sbjct: 554 SRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRG 613
Query: 656 PAQGLSEKGSSKKLASPTSSKNTLRGPGTKK-KARVGPHVRQGKRRKSLKSHSGRMRPSA 714
++ + + SP ++ R P + ++R R+G+ R + GR R
Sbjct: 614 RSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRT 673
Query: 715 EQKRAGRS 722
+R+GRS
Sbjct: 674 PARRSGRS 681
Score = 30.0 bits (66), Expect = 7.9
Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 1/119 (0%)
Query: 603 RAPPGKCKYKPVPVRTKSKRIPFRPLAKTVLDLLKEQSEKAARKSSSATLASGPAQGLSE 662
R PP + + P T+ R+ R + + + ++ R+S S + + PA+
Sbjct: 1683 RTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPSVS-SPEPAEKSRS 1741
Query: 663 KGSSKKLASPTSSKNTLRGPGTKKKARVGPHVRQGKRRKSLKSHSGRMRPSAEQKRAGR 721
+ +SP + + RG K R R RR+ ++ R R + Q + R
Sbjct: 1742 SRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRR 1800
>gi|109809739 La ribonucleoprotein domain family, member 7 [Homo
sapiens]
Length = 582
Score = 32.3 bits (72), Expect = 1.6
Identities = 40/166 (24%), Positives = 63/166 (37%), Gaps = 27/166 (16%)
Query: 577 LYFLATSYPSAYAPRGSIYKFVDPSRRA---------PPGKCKYKP--VPVRTKSKRIPF 625
+Y Y S P+G + + +A PP + KP P K+K IP
Sbjct: 152 VYISIPHYKSTGDPKGFAFVEFETKEQAAKAIEFLNNPPEEAPRKPGIFPKTVKNKPIP- 210
Query: 626 RPLAKTVLDLLKEQSEKAARKSSSATLASGPAQGLSEKGSSK-KLASPTSSKNTLRGPGT 684
+ V + K++ +K K A S SK K + PTS + +
Sbjct: 211 --ALRVVEEKKKKKKKKGRMKKEDNIQAKEENMDTSNTSISKMKRSRPTSEGSDIESTEP 268
Query: 685 --------KKKARVG----PHVRQGKRRKSLKSHSGRMRPSAEQKR 718
KK+ RV P VR GKR++S + + P ++ K+
Sbjct: 269 QKQCSKKKKKRDRVEASSLPEVRTGKRKRSSSEDAESLAPRSKVKK 314
>gi|109809741 La ribonucleoprotein domain family, member 7 [Homo
sapiens]
Length = 582
Score = 32.3 bits (72), Expect = 1.6
Identities = 40/166 (24%), Positives = 63/166 (37%), Gaps = 27/166 (16%)
Query: 577 LYFLATSYPSAYAPRGSIYKFVDPSRRA---------PPGKCKYKP--VPVRTKSKRIPF 625
+Y Y S P+G + + +A PP + KP P K+K IP
Sbjct: 152 VYISIPHYKSTGDPKGFAFVEFETKEQAAKAIEFLNNPPEEAPRKPGIFPKTVKNKPIP- 210
Query: 626 RPLAKTVLDLLKEQSEKAARKSSSATLASGPAQGLSEKGSSK-KLASPTSSKNTLRGPGT 684
+ V + K++ +K K A S SK K + PTS + +
Sbjct: 211 --ALRVVEEKKKKKKKKGRMKKEDNIQAKEENMDTSNTSISKMKRSRPTSEGSDIESTEP 268
Query: 685 --------KKKARVG----PHVRQGKRRKSLKSHSGRMRPSAEQKR 718
KK+ RV P VR GKR++S + + P ++ K+
Sbjct: 269 QKQCSKKKKKRDRVEASSLPEVRTGKRKRSSSEDAESLAPRSKVKK 314
>gi|154350220 DNA polymerase iota [Homo sapiens]
Length = 740
Score = 32.0 bits (71), Expect = 2.1
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 646 KSSSATLASGPAQGLSEKGSSKKLASPTSSKNTLRGPGTKKKARV-----GPH-VRQGKR 699
+ +S + SGP Q SE+ S KK +S +KN + RV PH VR R
Sbjct: 313 EDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNKIEELLASLLNRVCQDGRKPHTVRLIIR 372
Query: 700 RKSLKSHSGR 709
R S + H GR
Sbjct: 373 RYSSEKHYGR 382
>gi|27734897 hypothetical protein LOC203111 [Homo sapiens]
Length = 374
Score = 32.0 bits (71), Expect = 2.1
Identities = 37/140 (26%), Positives = 50/140 (35%), Gaps = 16/140 (11%)
Query: 552 SCAFPGLISTHSKFIISFAEDEAGELYFLATSYPSAYAPRGSIYKFVDPSRRAPPGKCKY 611
S FP + S F+ E E F A P A ++ V R P K K
Sbjct: 14 SSRFPSVTSNEH-----FSTAEESESCF-AQPKPHALGRESTVDGNVQRESRPPLQKLKV 67
Query: 612 KPVPVRTKSKRIPFRPLAKTVLDLLKEQSEKAARKSSSATLASGPAQGLSEKGSSKKLAS 671
P K + +PLAK V + A S +T + P +GL E G +
Sbjct: 68 SAEPTANGVKPLQEQPLAKDV------APGRDATDQSGSTEKTQPGEGLEESGPPQ---- 117
Query: 672 PTSSKNTLRGPGTKKKARVG 691
P ++ G KK A G
Sbjct: 118 PGGKEDAPAAEGKKKDAGAG 137
>gi|33188443 microfilament and actin filament cross-linker protein
isoform b [Homo sapiens]
Length = 5938
Score = 31.6 bits (70), Expect = 2.7
Identities = 36/110 (32%), Positives = 48/110 (43%), Gaps = 13/110 (11%)
Query: 582 TSYPSAYAPRGSIYKFVDPSRRAP-PGKCKYKPVPVRTKSKRIPFRPLAKTVLDLLKEQS 640
TS S+ A G+ DP + A PG R S+R + DLL+ QS
Sbjct: 5837 TSNSSSPASTGAKTNRADPKKSASRPGSRAGSRAGSRASSRR----GSDASDFDLLETQS 5892
Query: 641 EKAARKSSSATLASGPAQGLSEKGSSKKLASPTSSKNTL----RGPGTKK 686
A +S ++ A G QG S +G +K PT SK T R PG K+
Sbjct: 5893 --ACSDTSESSAAGG--QGNSRRGLNKPSKIPTMSKKTTTASPRTPGPKR 5938
>gi|33188445 microfilament and actin filament cross-linker protein
isoform a [Homo sapiens]
Length = 5430
Score = 31.6 bits (70), Expect = 2.7
Identities = 36/110 (32%), Positives = 48/110 (43%), Gaps = 13/110 (11%)
Query: 582 TSYPSAYAPRGSIYKFVDPSRRAP-PGKCKYKPVPVRTKSKRIPFRPLAKTVLDLLKEQS 640
TS S+ A G+ DP + A PG R S+R + DLL+ QS
Sbjct: 5329 TSNSSSPASTGAKTNRADPKKSASRPGSRAGSRAGSRASSRR----GSDASDFDLLETQS 5384
Query: 641 EKAARKSSSATLASGPAQGLSEKGSSKKLASPTSSKNTL----RGPGTKK 686
A +S ++ A G QG S +G +K PT SK T R PG K+
Sbjct: 5385 --ACSDTSESSAAGG--QGNSRRGLNKPSKIPTMSKKTTTASPRTPGPKR 5430
>gi|54792740 transmembrane and coiled-coil domain family 2 [Homo
sapiens]
Length = 709
Score = 31.6 bits (70), Expect = 2.7
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 641 EKAARK-SSSATLASGPAQGLSEKGSSKKLASPTSSKNTLRGPG 683
E+AAR S SATL S P G ++ SS +S + N+ GPG
Sbjct: 455 EEAARALSGSATLVSSPKYGSDDECSSASASSAGAGSNSGAGPG 498
>gi|145580626 E2F transcription factor 7 [Homo sapiens]
Length = 911
Score = 31.6 bits (70), Expect = 2.7
Identities = 21/81 (25%), Positives = 37/81 (45%)
Query: 597 FVDPSRRAPPGKCKYKPVPVRTKSKRIPFRPLAKTVLDLLKEQSEKAARKSSSATLASGP 656
FVD SR AP K +P+ + + K P R V + ++Q+E ++ L S
Sbjct: 35 FVDRSRMAPKTPIKNEPIDLSKQKKFTPERNPITPVKFVDRQQAEPWTPTANLKMLISAA 94
Query: 657 AQGLSEKGSSKKLASPTSSKN 677
+ + ++ K L P +K+
Sbjct: 95 SPDIRDREKKKGLFRPIENKD 115
>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
Length = 338
Score = 31.6 bits (70), Expect = 2.7
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 629 AKTVLDLLKEQSEKAARKSSSATLASGPAQGLSEKGSSKKLASPTSSKNTLRGPGTKKKA 688
A T + K+++ + R SSS S SS +S +SS ++ G KK+
Sbjct: 161 ASTSQERSKQKARRRTRSSSS-----------SSSSSSSSSSSSSSSSSSSSSDGRKKRG 209
Query: 689 RVGPHVRQGKRRKSLKSHSGRMRPSAEQKRA 719
+ R+ K+++ G+ + A+Q A
Sbjct: 210 KYKDKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
Length = 341
Score = 31.6 bits (70), Expect = 2.7
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 629 AKTVLDLLKEQSEKAARKSSSATLASGPAQGLSEKGSSKKLASPTSSKNTLRGPGTKKKA 688
A T + K+++ + R SSS S SS +S +SS ++ G KK+
Sbjct: 161 ASTSQERSKQKARRRTRSSSS-----------SSSSSSSSSSSSSSSSSSSSSDGRKKRG 209
Query: 689 RVGPHVRQGKRRKSLKSHSGRMRPSAEQKRA 719
+ R+ K+++ G+ + A+Q A
Sbjct: 210 KYKDKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
>gi|239755394 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 31.2 bits (69), Expect = 3.5
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 619 KSKRIPFRPLAKTVLDLLKEQSEKAARKSSSATLASGPAQGLSEKGSSKKLASPTSSKNT 678
+ ++ P R L + +E+ E+ R+ G QG ++ ++ P ++
Sbjct: 52 RQRKSPLRTLRSNQEEQEEEEDEQNGRRHQP-----GRKQGRAQARPARSPLRPAATACK 106
Query: 679 LRGPGTKKKARVGPHVRQGKRRKSLKSHSGRMRPSAEQKRAGR 721
G +KK R G + +R S SGR +PS ++R+G+
Sbjct: 107 GDDRGERKKGRRGNPGTRSRRITSSLWASGRPKPSQLRERSGK 149
>gi|239744215 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 31.2 bits (69), Expect = 3.5
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 619 KSKRIPFRPLAKTVLDLLKEQSEKAARKSSSATLASGPAQGLSEKGSSKKLASPTSSKNT 678
+ ++ P R L + +E+ E+ R+ G QG ++ ++ P ++
Sbjct: 52 RQRKSPLRTLRSNQEEQEEEEDEQNGRRHQP-----GRKQGRAQARPARSPLRPAATACK 106
Query: 679 LRGPGTKKKARVGPHVRQGKRRKSLKSHSGRMRPSAEQKRAGR 721
G +KK R G + +R S SGR +PS ++R+G+
Sbjct: 107 GDDRGERKKGRRGNPGTRSRRITSSLWASGRPKPSQLRERSGK 149
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 30.8 bits (68), Expect = 4.6
Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 18/137 (13%)
Query: 603 RAPPGKCKYKPVPVRTKSKRIPFRPLAKTVLDLLKEQSEKAARKSSS------ATLASGP 656
R PP + P+P T S + P LA+T + S+ A+ ++S+ L+S P
Sbjct: 434 RPPPPSTR--PLPPTTSSSKKPIPTLARTEAKITSHASKPASARTSTHKPPPFTALSSSP 491
Query: 657 AQGLSEKGSSKKLAS---PTSSKNTLR------GPGTKKKARVGPHVRQGKRRKSLKSHS 707
A S++ A+ PTS +T R PG+ P + ++ KS S
Sbjct: 492 APTPGSTRSTRPPATMVPPTSGTSTPRTAPAVPTPGSAPTGSKKPIGSEASKKAGPKS-S 550
Query: 708 GRMRPSAEQKRAGRSLP 724
R +A R +P
Sbjct: 551 PRKPVPLRPGKAARDVP 567
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 30.4 bits (67), Expect = 6.0
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 638 EQSEKAARKSSSATLASGPAQGLSEKGSSKKLASPTSSKNTLRG-PGTKKKARVGPHVRQ 696
EQSE A ++ ++T + + SS+ AS ++T+RG PG+ ++ R G H Q
Sbjct: 3394 EQSESAHGRTRTSTGRRQGSHHEQARDSSRHSASQ-EGQDTIRGHPGSSRRGRQGSHYEQ 3452
Query: 697 GKRRKSLKSHSG 708
R HSG
Sbjct: 3453 SVDR---SGHSG 3461
>gi|224809302 xeroderma pigmentosum, complementation group C isoform
2 [Homo sapiens]
Length = 903
Score = 30.4 bits (67), Expect = 6.0
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 657 AQGLSEKGSSKKLASPTSSKNTLRGPGTK--KKARVGPHVRQGK--RRKSLKSHSG 708
A+G KG KK + P+SS+ GPG K K + PH R+ + R S K SG
Sbjct: 344 AKGKRNKGGRKKRSKPSSSEED-EGPGDKQEKATQRRPHGRERRVASRVSYKEESG 398
>gi|224809295 xeroderma pigmentosum, complementation group C isoform
1 [Homo sapiens]
Length = 940
Score = 30.4 bits (67), Expect = 6.0
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 657 AQGLSEKGSSKKLASPTSSKNTLRGPGTK--KKARVGPHVRQGK--RRKSLKSHSG 708
A+G KG KK + P+SS+ GPG K K + PH R+ + R S K SG
Sbjct: 381 AKGKRNKGGRKKRSKPSSSEED-EGPGDKQEKATQRRPHGRERRVASRVSYKEESG 435
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.139 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,482,887
Number of Sequences: 37866
Number of extensions: 1575702
Number of successful extensions: 3966
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 3904
Number of HSP's gapped (non-prelim): 77
length of query: 724
length of database: 18,247,518
effective HSP length: 110
effective length of query: 614
effective length of database: 14,082,258
effective search space: 8646506412
effective search space used: 8646506412
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.