Guide to the Human Genome
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Name: CSH2 Sequence: fasta or formatted (122aa) NCBI GI: 12408694
Description:

chorionic somatomammotropin hormone 2 isoform 3

Referenced in:

Growth Hormone and Related Hormones
Ovary, Uterus and Placenta

Other entries for this name:
alt prot [217aa] chorionic somatomammotropin hormone 2 isoform 1
alt prot [167aa] chorionic somatomammotropin hormone 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         11           2
 C cysteine            3.3          4           1
 D aspartate           5.7          7           1
 E glutamate           4.1          5           1
 F phenylalanine       5.7          7           1
 G glycine             5.7          7           1
 H histidine           4.1          5           1
 I isoleucine          1.6          2           1
 K lysine              4.1          5           1
 L leucine            14.8         18           3
 M methionine          3.3          4           1
 N asparagine          2.5          3           1
 P proline             1.6          2           1
 Q glutamine           6.6          8           1
 R arginine            7.4          9           2
 S serine              6.6          8           1
 T threonine           5.7          7           1
 V valine              4.1          5           1
 W tryptophan          0.8          1           1
 Y tyrosine            3.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chorionic somatomammotropin hormone 2 isoform 3 [Hom... 
CSH1                  0.991   chorionic somatomammotropin hormone 1 isoform 3 [Hom...
GH1                   0.876   growth hormone 1 isoform 4 
GH1                   0.636   growth hormone 1 isoform 3 
LOC100293689          0.507   PREDICTED: similar to chorionic somatomammotropin h...
CSH1                  0.507   chorionic somatomammotropin hormone 1 isoform 1 [Homo...
CSH2                  0.507   chorionic somatomammotropin hormone 2 isoform 1 [Hom...
CSHL1                 0.467   chorionic somatomammotropin hormone-like 1 isoform 2...
CSHL1                 0.467   chorionic somatomammotropin hormone-like 1 isoform 4...
CSHL1                 0.467   chorionic somatomammotropin hormone-like 1 isoform 1...
CSHL1                 0.467   chorionic somatomammotropin hormone-like 1 isoform 3...
GH1                   0.462   growth hormone 1 isoform 1 
GH1                   0.462   growth hormone 1 isoform 2 
GH2                   0.444   growth hormone 2 isoform 1 
GH2                   0.444   growth hormone 2 isoform 4 
CSH2                  0.404   chorionic somatomammotropin hormone 2 isoform 2 [Hom...
CSH1                  0.396   chorionic somatomammotropin hormone 1 isoform 2 [Hom...
GH2                   0.289   growth hormone 2 isoform 3 
GH2                   0.289   growth hormone 2 isoform 2 
PRL                   0.040   prolactin precursor 
CLSTN2                0.022   calsyntenin 2 
MDGA2                 0.022   MAM domain containing 1 isoform 1 
MDGA2                 0.022   MAM domain containing 1 isoform 2 
PHKB                  0.013   phosphorylase kinase, beta isoform b 
PHKB                  0.013   phosphorylase kinase, beta isoform a 
LOC652794             0.009   PREDICTED: similar to tektin 4 
MAFIP                 0.009   PREDICTED: MAFF interacting protein 
SPIN1                 0.009   spindlin 
FOXF1                 0.009   forkhead box F1 
LOC729756             0.009   PREDICTED: similar to hCG2041108 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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