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Name: CSH2 Sequence: fasta or formatted (167aa) NCBI GI: 12408692
Description:

chorionic somatomammotropin hormone 2 isoform 2

Referenced in:

Growth Hormone and Related Hormones
Ovary, Uterus and Placenta

Other entries for this name:
alt prot [217aa] chorionic somatomammotropin hormone 2 isoform 1
alt prot [122aa] chorionic somatomammotropin hormone 2 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         14           2
 C cysteine            1.2          2           1
 D aspartate           6.0         10           2
 E glutamate           6.6         11           2
 F phenylalanine       4.8          8           1
 G glycine             3.6          6           1
 H histidine           3.0          5           1
 I isoleucine          3.6          6           1
 K lysine              2.4          4           1
 L leucine            15.6         26           3
 M methionine          3.0          5           1
 N asparagine          3.0          5           2
 P proline             5.4          9           1
 Q glutamine           6.0         10           2
 R arginine            4.2          7           1
 S serine              9.0         15           1
 T threonine           6.0         10           1
 V valine              4.2          7           1
 W tryptophan          1.2          2           1
 Y tyrosine            3.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chorionic somatomammotropin hormone 2 isoform 2 [Hom... 
CSH1                  0.990   chorionic somatomammotropin hormone 1 isoform 2 [Hom...
CSH2                  0.903   chorionic somatomammotropin hormone 2 isoform 1 [Hom...
CSH1                  0.897   chorionic somatomammotropin hormone 1 isoform 1 [Homo...
CSHL1                 0.784   chorionic somatomammotropin hormone-like 1 isoform 1...
GH2                   0.732   growth hormone 2 isoform 2 
GH1                   0.726   growth hormone 1 isoform 1 
GH2                   0.665   growth hormone 2 isoform 3 
GH2                   0.655   growth hormone 2 isoform 1 
CSHL1                 0.626   chorionic somatomammotropin hormone-like 1 isoform 2...
GH1                   0.610   growth hormone 1 isoform 2 
GH2                   0.552   growth hormone 2 isoform 4 
GH1                   0.448   growth hormone 1 isoform 3 
CSHL1                 0.329   chorionic somatomammotropin hormone-like 1 isoform 4...
CSH2                  0.294   chorionic somatomammotropin hormone 2 isoform 3 [Hom...
CSH1                  0.287   chorionic somatomammotropin hormone 1 isoform 3 [Hom...
CSHL1                 0.284   chorionic somatomammotropin hormone-like 1 isoform 3...
GH1                   0.232   growth hormone 1 isoform 4 
LOC100293689          0.135   PREDICTED: similar to chorionic somatomammotropin h...
PRL                   0.094   prolactin precursor 
BRD8                  0.019   bromodomain containing 8 isoform 3 
BRD8                  0.019   bromodomain containing 8 isoform 2 
BRD8                  0.019   bromodomain containing 8 isoform 1 
TNFAIP1               0.016   tumor necrosis factor, alpha-induced protein 1 [Homo...
DMD                   0.010   dystrophin Dp427c isoform 
DMD                   0.010   dystrophin Dp427p2 isoform 
DMD                   0.010   dystrophin Dp427p1 isoform 
DMD                   0.010   dystrophin Dp427l isoform 
DMD                   0.010   dystrophin Dp427m isoform 
LOC729756             0.006   PREDICTED: similar to hCG2041108 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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