Guide to the Human Genome
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Name: DDR1 Sequence: fasta or formatted (876aa) NCBI GI: 38327632
Description:

discoidin domain receptor family, member 1 isoform b

Referenced in:

Receptor Tyrosine Kinases

Other entries for this name:
alt prot [913aa] discoidin domain receptor family, member 1 isoform a
alt prot [919aa] discoidin domain receptor family, member 1 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         67           2
 C cysteine            1.9         17           1
 D aspartate           5.6         49           2
 E glutamate           5.6         49           3
 F phenylalanine       3.8         33           2
 G glycine             9.4         82           2
 H histidine           2.2         19           1
 I isoleucine          3.0         26           2
 K lysine              2.4         21           1
 L leucine            11.5        101           6
 M methionine          2.7         24           1
 N asparagine          3.2         28           2
 P proline             8.1         71           4
 Q glutamine           3.9         34           2
 R arginine            7.6         67           2
 S serine              6.3         55           3
 T threonine           3.1         27           2
 V valine              6.8         60           2
 W tryptophan          2.2         19           2
 Y tyrosine            3.1         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   discoidin domain receptor family, member 1 isoform b... 
DDR1                  0.989   discoidin domain receptor family, member 1 isoform a...
DDR1                  0.986   discoidin domain receptor family, member 1 isoform c...
DDR2                  0.501   discoidin domain receptor family, member 2 precursor...
DDR2                  0.501   discoidin domain receptor family, member 2 precursor...
NTRK2                 0.124   neurotrophic tyrosine kinase, receptor, type 2 isofo...
NTRK2                 0.124   neurotrophic tyrosine kinase, receptor, type 2 isofo...
NTRK3                 0.121   neurotrophic tyrosine kinase, receptor, type 3 isofo...
NTRK1                 0.119   neurotrophic tyrosine kinase, receptor, type 1 isofo...
NTRK1                 0.119   neurotrophic tyrosine kinase, receptor, type 1 isofor...
NTRK1                 0.119   neurotrophic tyrosine kinase, receptor, type 1 isofo...
NTRK3                 0.115   neurotrophic tyrosine kinase, receptor, type 3 isofo...
MUSK                  0.112   skeletal muscle receptor tyrosine kinase 
ROR1                  0.102   receptor tyrosine kinase-like orphan receptor 1 iso...
INSR                  0.097   insulin receptor isoform Short precursor 
INSR                  0.097   insulin receptor isoform Long precursor 
ROR2                  0.097   receptor tyrosine kinase-like orphan receptor 2 prec...
ROS1                  0.096   proto-oncogene c-ros-1 protein precursor 
INSRR                 0.094   insulin receptor-related receptor precursor 
ABL1                  0.094   c-abl oncogene 1, receptor tyrosine kinase isoform a...
ABL1                  0.094   c-abl oncogene 1, receptor tyrosine kinase isoform b...
IGF1R                 0.093   insulin-like growth factor 1 receptor precursor [Homo...
RET                   0.092   ret proto-oncogene isoform c 
RET                   0.092   ret proto-oncogene isoform a 
FGFR4                 0.092   fibroblast growth factor receptor 4 isoform 2 precur...
FGFR4                 0.092   fibroblast growth factor receptor 4 isoform 1 precur...
FGFR4                 0.092   fibroblast growth factor receptor 4 isoform 1 precur...
ABL2                  0.091   arg tyrosine kinase isoform c 
ABL2                  0.091   arg tyrosine kinase isoform b 
ABL2                  0.091   arg tyrosine kinase isoform e 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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