Guide to the Human Genome
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Name: ROS1 Sequence: fasta or formatted (2347aa) NCBI GI: 19924165
Description:

proto-oncogene c-ros-1 protein precursor

Referenced in:

Fibronectin Family
Retroviral Oncogene Homologs
Rho and Rac
Receptor Tyrosine Kinases
Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3        125           2
 C cysteine            2.1         49           2
 D aspartate           4.2         98           2
 E glutamate           6.1        144           3
 F phenylalanine       4.6        107           2
 G glycine             6.0        141           2
 H histidine           2.1         49           1
 I isoleucine          6.5        153           2
 K lysine              5.0        117           2
 L leucine             9.9        233           3
 M methionine          1.5         36           1
 N asparagine          5.2        123           2
 P proline             5.4        127           2
 Q glutamine           4.1         97           2
 R arginine            3.7         86           2
 S serine              8.9        208           3
 T threonine           6.1        142           2
 V valine              7.1        166           4
 W tryptophan          2.2         52           1
 Y tyrosine            4.0         94           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proto-oncogene c-ros-1 protein precursor 
ALK                   0.058   anaplastic lymphoma kinase 
LTK                   0.055   leukocyte receptor tyrosine kinase isoform 1 precurs...
LTK                   0.055   leukocyte receptor tyrosine kinase isoform 2 precurs...
IGF1R                 0.051   insulin-like growth factor 1 receptor precursor [Homo...
INSR                  0.051   insulin receptor isoform Short precursor 
INSR                  0.051   insulin receptor isoform Long precursor 
INSRR                 0.049   insulin receptor-related receptor precursor 
LTK                   0.049   leukocyte receptor tyrosine kinase isoform 3 precur...
RET                   0.044   ret proto-oncogene isoform c 
RET                   0.044   ret proto-oncogene isoform a 
FER                   0.042   fer (fps/fes related) tyrosine kinase 
MERTK                 0.041   MER receptor tyrosine kinase precursor 
AXL                   0.041   AXL receptor tyrosine kinase isoform 2 
FES                   0.041   feline sarcoma oncogene isoform 4 
FES                   0.041   feline sarcoma oncogene isoform 3 
FES                   0.041   feline sarcoma oncogene isoform 2 
FES                   0.041   feline sarcoma oncogene isoform 1 
FGFR3                 0.041   fibroblast growth factor receptor 3 isoform 1 precurs...
AXL                   0.041   AXL receptor tyrosine kinase isoform 1 
FGFR2                 0.041   fibroblast growth factor receptor 2 isoform 9 precu...
FGFR2                 0.041   fibroblast growth factor receptor 2 isoform 3 precu...
FGFR2                 0.041   fibroblast growth factor receptor 2 isoform 8 precu...
FGFR2                 0.041   fibroblast growth factor receptor 2 isoform 7 precu...
FGFR2                 0.041   fibroblast growth factor receptor 2 isoform 6 precu...
FGFR2                 0.041   fibroblast growth factor receptor 2 isoform 4 precu...
FGFR2                 0.041   fibroblast growth factor receptor 2 isoform 1 precu...
FGFR2                 0.041   fibroblast growth factor receptor 2 isoform 2 precu...
FGFR3                 0.041   fibroblast growth factor receptor 3 isoform 3 precu...
EPHA2                 0.040   ephrin receptor EphA2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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