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Search of human proteins with 38202239
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38202239 transcription factor 21 [Homo sapiens]
(179 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38202237 transcription factor 21 [Homo sapiens] 357 2e-99
gi|38202239 transcription factor 21 [Homo sapiens] 357 2e-99
gi|116805332 musculin [Homo sapiens] 193 8e-50
gi|239749439 PREDICTED: similar to transcription factor 23 [Homo... 74 9e-14
gi|239743573 PREDICTED: similar to transcription factor 23 [Homo... 74 9e-14
gi|48255909 basic helix-loop-helix transcription factor 15 [Homo... 72 2e-13
gi|239754900 PREDICTED: similar to transcription factor 23 [Homo... 72 3e-13
gi|17981708 twist homolog 2 [Homo sapiens] 69 2e-12
gi|148922889 scleraxis homolog B [Homo sapiens] 69 3e-12
gi|186972126 scleraxis homolog A [Homo sapiens] 69 3e-12
gi|75677394 transcription factor 23 [Homo sapiens] 68 4e-12
gi|12545384 basic helix-loop-helix transcription factor HAND2 [H... 65 4e-11
gi|4507741 twist [Homo sapiens] 64 7e-11
gi|121114306 neurogenic differentiation 1 [Homo sapiens] 60 8e-10
gi|5031943 nescient helix loop helix 1 [Homo sapiens] 59 2e-09
gi|4758506 basic helix-loop-helix transcription factor HAND1 [Ho... 59 2e-09
gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens] 59 2e-09
gi|27475985 neurogenic differentiation 6 [Homo sapiens] 59 3e-09
gi|153792190 neurogenic differentiation 4 [Homo sapiens] 58 4e-09
gi|98986461 neurogenic differentiation 2 [Homo sapiens] 57 8e-09
gi|68989258 neurogenin 3 [Homo sapiens] 56 1e-08
gi|4885075 atonal homolog 1 [Homo sapiens] 56 2e-08
gi|30039710 pancreas specific transcription factor, 1a [Homo sap... 56 2e-08
gi|21553337 atonal homolog 7 [Homo sapiens] 56 2e-08
gi|161484632 nescient helix loop helix 2 [Homo sapiens] 55 4e-08
gi|5031945 nescient helix loop helix 2 [Homo sapiens] 55 4e-08
gi|31077092 neurogenin 2 [Homo sapiens] 53 2e-07
gi|29126247 basic helix-loop-helix family, member a15 [Homo sapi... 52 2e-07
gi|23097242 nephew of atonal 3 [Homo sapiens] 52 2e-07
gi|116517330 factor in the germline alpha [Homo sapiens] 52 4e-07
>gi|38202237 transcription factor 21 [Homo sapiens]
Length = 179
Score = 357 bits (917), Expect = 2e-99
Identities = 179/179 (100%), Positives = 179/179 (100%)
Query: 1 MSTGSLSDVEDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRR 60
MSTGSLSDVEDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRR
Sbjct: 1 MSTGSLSDVEDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRR 60
Query: 61 KAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDT 120
KAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDT
Sbjct: 61 KAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDT 120
Query: 121 LRLASSYIAHLRQILANDKYENGYIHPVNLTWPFMVAGKPESDLKEVVTASRLCGTTAS 179
LRLASSYIAHLRQILANDKYENGYIHPVNLTWPFMVAGKPESDLKEVVTASRLCGTTAS
Sbjct: 121 LRLASSYIAHLRQILANDKYENGYIHPVNLTWPFMVAGKPESDLKEVVTASRLCGTTAS 179
>gi|38202239 transcription factor 21 [Homo sapiens]
Length = 179
Score = 357 bits (917), Expect = 2e-99
Identities = 179/179 (100%), Positives = 179/179 (100%)
Query: 1 MSTGSLSDVEDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRR 60
MSTGSLSDVEDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRR
Sbjct: 1 MSTGSLSDVEDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRR 60
Query: 61 KAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDT 120
KAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDT
Sbjct: 61 KAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDT 120
Query: 121 LRLASSYIAHLRQILANDKYENGYIHPVNLTWPFMVAGKPESDLKEVVTASRLCGTTAS 179
LRLASSYIAHLRQILANDKYENGYIHPVNLTWPFMVAGKPESDLKEVVTASRLCGTTAS
Sbjct: 121 LRLASSYIAHLRQILANDKYENGYIHPVNLTWPFMVAGKPESDLKEVVTASRLCGTTAS 179
>gi|116805332 musculin [Homo sapiens]
Length = 206
Score = 193 bits (490), Expect = 8e-50
Identities = 112/206 (54%), Positives = 135/206 (65%), Gaps = 28/206 (13%)
Query: 1 MSTGSLSDVEDLQ--------EVEMLECDGLK-MDSNKEFVTSNESTEE----------- 40
MSTGS+SD E+++ V + L+ ++ + + N S EE
Sbjct: 1 MSTGSVSDPEEMELRGLQREYPVPASKRPPLRGVERSYASPSDNSSAEEEDPDGEEERCA 60
Query: 41 ------SSNCENGSPQ-KGRGGLGKRRKAPTKKS-PLSGVSQEGKQVQRNAANARERARM 92
+ C+ P+ G GG G KK P G + E KQ QRNAANARERARM
Sbjct: 61 LGTAGSAEGCKRKRPRVAGGGGAGGSAGGGGKKPLPAKGSAAECKQSQRNAANARERARM 120
Query: 93 RVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYENGYIHPVNLTW 152
RVLSKAFSRLKT+LPWVPPDTKLSKLDTLRLASSYIAHLRQ+L D+YENGY+HPVNLTW
Sbjct: 121 RVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYENGYVHPVNLTW 180
Query: 153 PFMVAGKPESDLKEVVTASRLCGTTA 178
PF+V+G+P+SD KEV A+RLCGTTA
Sbjct: 181 PFVVSGRPDSDTKEVSAANRLCGTTA 206
>gi|239749439 PREDICTED: similar to transcription factor 23 [Homo
sapiens]
Length = 167
Score = 73.6 bits (179), Expect = 9e-14
Identities = 47/105 (44%), Positives = 58/105 (55%), Gaps = 13/105 (12%)
Query: 60 RKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLD 119
R P P G S+ G A ARER+R++ L AF L+ TLP VPPDTKLSKLD
Sbjct: 31 RTGPGPAGP-GGGSRSGSGRPAAANAARERSRVQTLRHAFLELQRTLPSVPPDTKLSKLD 89
Query: 120 TLRLASSYIAHLRQILANDKYE-----------NGYIHPVNLTWP 153
L LA++YIAHL + L +D +GY+HPV WP
Sbjct: 90 VLLLATTYIAHLTRSLQDDAEAPADAGLGALRGDGYLHPVK-KWP 133
>gi|239743573 PREDICTED: similar to transcription factor 23 [Homo
sapiens]
Length = 167
Score = 73.6 bits (179), Expect = 9e-14
Identities = 47/105 (44%), Positives = 58/105 (55%), Gaps = 13/105 (12%)
Query: 60 RKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLD 119
R P P G S+ G A ARER+R++ L AF L+ TLP VPPDTKLSKLD
Sbjct: 31 RTGPGPAGP-GGGSRSGSGRPAAANAARERSRVQTLRHAFLELQRTLPSVPPDTKLSKLD 89
Query: 120 TLRLASSYIAHLRQILANDKYE-----------NGYIHPVNLTWP 153
L LA++YIAHL + L +D +GY+HPV WP
Sbjct: 90 VLLLATTYIAHLTRSLQDDAEAPADAGLGALRGDGYLHPVK-KWP 133
>gi|48255909 basic helix-loop-helix transcription factor 15 [Homo
sapiens]
Length = 199
Score = 72.4 bits (176), Expect = 2e-13
Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 9/114 (7%)
Query: 25 MDSNKEFVTSNESTEESSNCENGSPQKGRG---GLGKRRKAPTKKSPLSGVSQEGKQVQR 81
+ ++E + ++++++S C G RG G G+R P+ V Q R
Sbjct: 21 LSEDEENRSESDASDQSFGCCEGPEAARRGPGPGGGRRAGGGGGAGPVVVVRQ------R 74
Query: 82 NAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQIL 135
AANARER R + ++ AF+ L+T +P P D KLSK++TLRLASSYIAHL +L
Sbjct: 75 QAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIETLRLASSYIAHLANVL 128
>gi|239754900 PREDICTED: similar to transcription factor 23 [Homo
sapiens]
Length = 167
Score = 71.6 bits (174), Expect = 3e-13
Identities = 43/92 (46%), Positives = 55/92 (59%), Gaps = 14/92 (15%)
Query: 73 SQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLR 132
S G+ NAA RER+R++ L AF ++ TLP VPPDTKLSKLD L LA++YIAHL
Sbjct: 45 SGSGRPAAENAA--RERSRVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLT 102
Query: 133 QILANDKYE-----------NGYIHPVNLTWP 153
+ L +D +GY+HPV WP
Sbjct: 103 RSLQDDAEAPADAGLGALRGDGYLHPVK-KWP 133
>gi|17981708 twist homolog 2 [Homo sapiens]
Length = 160
Score = 69.3 bits (168), Expect = 2e-12
Identities = 50/133 (37%), Positives = 72/133 (54%), Gaps = 17/133 (12%)
Query: 29 KEFVTSNESTEESSNCENGSPQKGRGGLGKRRKAPTKKSPLSGVSQEGKQVQRNAANARE 88
K F +++SS E+GSP G+ G KK S S E Q QR AN RE
Sbjct: 27 KRFGRKRRYSKKSS--EDGSPTPGKRG---------KKGSPSAQSFEELQSQRILANVRE 75
Query: 89 RARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYEN-----G 143
R R + L++AF+ L+ +P +P D KLSK+ TL+LA+ YI L Q+L +D+ +N
Sbjct: 76 RQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCS 134
Query: 144 YIHPVNLTWPFMV 156
Y+ L++ F V
Sbjct: 135 YVAHERLSYAFSV 147
>gi|148922889 scleraxis homolog B [Homo sapiens]
Length = 201
Score = 68.6 bits (166), Expect = 3e-12
Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 9/106 (8%)
Query: 39 EESSNCENGSPQK------GRGGL-GKRRKAPTKKSPLSGVS-QEGKQV-QRNAANARER 89
E+ + +GS +K R GL G RR+A +++ G + G++ QR+ ANARER
Sbjct: 26 EDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTANARER 85
Query: 90 ARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQIL 135
R ++ AF+ L+T +P P D KLSK++TLRLASSYI+HL +L
Sbjct: 86 DRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131
>gi|186972126 scleraxis homolog A [Homo sapiens]
Length = 201
Score = 68.6 bits (166), Expect = 3e-12
Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 9/106 (8%)
Query: 39 EESSNCENGSPQK------GRGGL-GKRRKAPTKKSPLSGVS-QEGKQV-QRNAANARER 89
E+ + +GS +K R GL G RR+A +++ G + G++ QR+ ANARER
Sbjct: 26 EDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTANARER 85
Query: 90 ARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQIL 135
R ++ AF+ L+T +P P D KLSK++TLRLASSYI+HL +L
Sbjct: 86 DRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131
>gi|75677394 transcription factor 23 [Homo sapiens]
Length = 214
Score = 68.2 bits (165), Expect = 4e-12
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 10/103 (9%)
Query: 60 RKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLD 119
R P + +G G+ ARER+R+R L +AF L+ LP VPPDTKLSKLD
Sbjct: 57 RATPGPRGTRAGGLALGRSEASPENAARERSRVRTLRQAFLALQAALPAVPPDTKLSKLD 116
Query: 120 TLRLASSYIAHLRQILAND-------KYENG--YIHPVNLTWP 153
L LA+SYIAHL + L ++ + G Y+HP+ WP
Sbjct: 117 VLVLAASYIAHLTRTLGHELPGPAWPPFLRGLRYLHPLK-KWP 158
>gi|12545384 basic helix-loop-helix transcription factor HAND2 [Homo
sapiens]
Length = 217
Score = 64.7 bits (156), Expect = 4e-11
Identities = 33/64 (51%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 80 QRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDK 139
+R AN +ER R + ++ AF+ L+ +P VP DTKLSK+ TLRLA+SYIA+L +LA D
Sbjct: 100 RRGTANRKERRRTQSINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDLLAKDD 159
Query: 140 YENG 143
+NG
Sbjct: 160 -QNG 162
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 63.9 bits (154), Expect = 7e-11
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 14/123 (11%)
Query: 39 EESSNCENGSPQKGRGGLGKRRKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKA 98
++S+ C G G GG +P S E Q QR AN RER R + L++A
Sbjct: 76 KKSAGCGGGGGAGGGGGSSSGGGSPQ--------SYEELQTQRVMANVRERQRTQSLNEA 127
Query: 99 FSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYEN-----GYIHPVNLTWP 153
F+ L+ +P +P D KLSK+ TL+LA+ YI L Q+L +D+ ++ Y+ L++
Sbjct: 128 FAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSDELDSKMASCSYVAHERLSYA 186
Query: 154 FMV 156
F V
Sbjct: 187 FSV 189
>gi|121114306 neurogenic differentiation 1 [Homo sapiens]
Length = 356
Score = 60.5 bits (145), Expect = 8e-10
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 1/135 (0%)
Query: 6 LSDVEDLQEVEMLECDGLKMDSNKEFVTSN-ESTEESSNCENGSPQKGRGGLGKRRKAPT 64
LS ++ E + E D M++ ++ + + E +E + E ++ K ++
Sbjct: 27 LSSQDEEHEADKKEDDLEAMNAEEDSLRNGGEEEDEDEDLEEEEEEEEEDDDQKPKRRGP 86
Query: 65 KKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLA 124
KK ++ E +++R ANARER RM L+ A L+ +P KLSK++TLRLA
Sbjct: 87 KKKKMTKARLERFKLRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLA 146
Query: 125 SSYIAHLRQILANDK 139
+YI L +IL + K
Sbjct: 147 KNYIWALSEILRSGK 161
>gi|5031943 nescient helix loop helix 1 [Homo sapiens]
Length = 133
Score = 59.3 bits (142), Expect = 2e-09
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 17/133 (12%)
Query: 17 MLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGK---RRKAPTKKSP----L 69
ML D +++D T +E+ S+C G+ G G G + + P P L
Sbjct: 2 MLNSDTMELDLPP---THSETESGFSDCGGGAGPDGAGPGGPGGGQARGPEPGEPGRKDL 58
Query: 70 SGVSQEGKQVQRNAAN-------ARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLR 122
+S+E ++ +R A RER R+ + AF+ L+ LP +PPD KLSK++ LR
Sbjct: 59 QHLSREERRRRRRATAKYRTAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR 118
Query: 123 LASSYIAHLRQIL 135
LA YI++L +L
Sbjct: 119 LAICYISYLNHVL 131
>gi|4758506 basic helix-loop-helix transcription factor HAND1 [Homo
sapiens]
Length = 215
Score = 58.9 bits (141), Expect = 2e-09
Identities = 28/59 (47%), Positives = 41/59 (69%)
Query: 80 QRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILAND 138
++ + +ER R ++ AF+ L+ +P VP DTKLSK+ TLRLA+SYIA+L +LA D
Sbjct: 95 RKGSGPKKERRRTESINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDVLAKD 153
>gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens]
Length = 331
Score = 58.9 bits (141), Expect = 2e-09
Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 13/130 (10%)
Query: 58 KRRKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSK 117
KRR +P + G K V+R N+RER R + ++ AF+ L+ +P PPD KLSK
Sbjct: 168 KRRPSPYEMEITDG--PHTKVVRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSK 225
Query: 118 LDTLRLASSYIAHLRQILANDKYENGYIHPVNLTWPFMVAG----------KPESDLKEV 167
+ LRLA YI L ++L ND+ E G P + AG P+ L++V
Sbjct: 226 NEILRLAMKYINFLAKLL-NDQEEEGTQRAKTGKDPVVGAGGGGGGGGGGAPPDDLLQDV 284
Query: 168 VTASRLCGTT 177
++ + CG++
Sbjct: 285 LSPNSSCGSS 294
>gi|27475985 neurogenic differentiation 6 [Homo sapiens]
Length = 337
Score = 58.5 bits (140), Expect = 3e-09
Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Query: 10 EDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRRKAPTKKSPL 69
E + +L +K +E E + ENG P++ G R+K TK
Sbjct: 35 ESFSKQIVLRGKSIKRAPGEETEKEEEEEDREEEDENGLPRRR----GLRKKKTTK---- 86
Query: 70 SGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIA 129
+ E + +R ANARER RM L+ A L+ +P KLSK++TLRLA +YI
Sbjct: 87 --LRLERVKFRRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIW 144
Query: 130 HLRQIL 135
L +IL
Sbjct: 145 ALSEIL 150
>gi|153792190 neurogenic differentiation 4 [Homo sapiens]
Length = 331
Score = 58.2 bits (139), Expect = 4e-09
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 38 TEESSNCENGSPQKGRGGLGKRRKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSK 97
TEE + E ++ G KRR KK ++ E + +R ANARER RM L+
Sbjct: 48 TEEHDSIEEEEEEEEDGEKPKRRGP--KKKKMTKARLERFRARRVKANARERTRMHGLND 105
Query: 98 AFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYENG 143
A L+ +P KLSK++TLRLA +YI L ++L + G
Sbjct: 106 ALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLETGQTPEG 151
>gi|98986461 neurogenic differentiation 2 [Homo sapiens]
Length = 382
Score = 57.0 bits (136), Expect = 8e-09
Identities = 38/104 (36%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 36 ESTEESSNCENGSPQKGRGGLGKRRKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVL 95
E EE + G K RG KK ++ E +++R ANARER RM L
Sbjct: 87 EEEEEGLDEAEGERPKKRG---------PKKRKMTKARLERSKLRRQKANARERNRMHDL 137
Query: 96 SKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDK 139
+ A L+ +P KLSK++TLRLA +YI L +IL + K
Sbjct: 138 NAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGK 181
>gi|68989258 neurogenin 3 [Homo sapiens]
Length = 214
Score = 56.2 bits (134), Expect = 1e-08
Identities = 40/101 (39%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 35 NESTEESSNCENGSPQKGRGGLGKRRKAPTKKSPLSGVSQEGKQVQRNAANARERARMRV 94
N + E C G+P+K R G R + KS L+ Q ++ +R AN RER RM
Sbjct: 45 NCAEAEEGGCR-GAPRKLRARRGGRSRP---KSELALSKQ--RRSRRKKANDRERNRMHN 98
Query: 95 LSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQIL 135
L+ A L+ LP P D KL+K++TLR A +YI L Q L
Sbjct: 99 LNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTL 139
>gi|4885075 atonal homolog 1 [Homo sapiens]
Length = 354
Score = 55.8 bits (133), Expect = 2e-08
Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
Query: 59 RRKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKL 118
R++AP+ K ++GV ++ +R AANARER RM L+ AF +L+ +P D KLSK
Sbjct: 144 RQRAPSSKQ-VNGVQKQ----RRLAANARERRRMHGLNHAFDQLRNVIPSFNNDKKLSKY 198
Query: 119 DTLRLASSYIAHLRQIL 135
+TL++A YI L ++L
Sbjct: 199 ETLQMAQIYINALSELL 215
>gi|30039710 pancreas specific transcription factor, 1a [Homo
sapiens]
Length = 328
Score = 55.8 bits (133), Expect = 2e-08
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 73 SQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLR 132
S+ Q R AAN RER RM+ ++ AF L++ +P +P + +LSK+DTLRLA YI L
Sbjct: 157 SEAELQQLRQAANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLAIGYINFLS 216
Query: 133 QILAND 138
+++ D
Sbjct: 217 ELVQAD 222
>gi|21553337 atonal homolog 7 [Homo sapiens]
Length = 152
Score = 55.8 bits (133), Expect = 2e-08
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 80 QRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILA 136
+R AANARER RM+ L+ AF RL+ +P D KLSK +TL++A SYI L +ILA
Sbjct: 41 RRLAANARERRRMQGLNTAFDRLRRVVPQWGQDKKLSKYETLQMALSYIMALTRILA 97
>gi|161484632 nescient helix loop helix 2 [Homo sapiens]
Length = 135
Score = 54.7 bits (130), Expect = 4e-08
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 28/133 (21%)
Query: 3 TGSLSDVEDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRRKA 62
T L V DL+ VE E DG + + + E +RR+A
Sbjct: 29 TKVLGSVSDLEPVEEAEGDGKGGSRAALYPHPQQLSREEKR--------------RRRRA 74
Query: 63 PTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLR 122
K R+A RER R+ + AF+ L+ LP +PPD KLSK++ LR
Sbjct: 75 TAK--------------YRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR 120
Query: 123 LASSYIAHLRQIL 135
LA YI++L +L
Sbjct: 121 LAICYISYLNHVL 133
>gi|5031945 nescient helix loop helix 2 [Homo sapiens]
Length = 135
Score = 54.7 bits (130), Expect = 4e-08
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 28/133 (21%)
Query: 3 TGSLSDVEDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRRKA 62
T L V DL+ VE E DG + + + E +RR+A
Sbjct: 29 TKVLGSVSDLEPVEEAEGDGKGGSRAALYPHPQQLSREEKR--------------RRRRA 74
Query: 63 PTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLR 122
K R+A RER R+ + AF+ L+ LP +PPD KLSK++ LR
Sbjct: 75 TAK--------------YRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR 120
Query: 123 LASSYIAHLRQIL 135
LA YI++L +L
Sbjct: 121 LAICYISYLNHVL 133
>gi|31077092 neurogenin 2 [Homo sapiens]
Length = 272
Score = 52.8 bits (125), Expect = 2e-07
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 59 RRKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKL 118
R +A ++ + + Q K+ +R AN RER RM L+ A L+ LP P D KL+K+
Sbjct: 92 RARAVSRGAKTAETVQRIKKTRRLKANNRERNRMHNLNAALDALREVLPTFPEDAKLTKI 151
Query: 119 DTLRLASSYIAHLRQIL 135
+TLR A +YI L + L
Sbjct: 152 ETLRFAHNYIWALTETL 168
>gi|29126247 basic helix-loop-helix family, member a15 [Homo
sapiens]
Length = 189
Score = 52.4 bits (124), Expect = 2e-07
Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 17/112 (15%)
Query: 33 TSNESTEESSNCENGSPQKGRG-------------GLGKRRKAPTKKSPLSGVSQEGKQV 79
T E T + S N P+ +G G G+RR+ P P G ++
Sbjct: 20 TPGEGTPDGS-LPNPGPEPAKGLRSRPARAAARAPGEGRRRR-PGPSGP--GGRRDSSIQ 75
Query: 80 QRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHL 131
+R +N RER RM L+ AF L+ +P V D KLSK++TL LA +YI L
Sbjct: 76 RRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSL 127
>gi|23097242 nephew of atonal 3 [Homo sapiens]
Length = 166
Score = 52.4 bits (124), Expect = 2e-07
Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 18/104 (17%)
Query: 45 ENGSPQKGRG----GLGKRRKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFS 100
E ++GRG G KR++ T QR AAN RER RM L++AF
Sbjct: 76 EEEEEERGRGVSLLGRPKRKRVIT-------------YAQRQAANIRERKRMFNLNEAFD 122
Query: 101 RLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILAN-DKYENG 143
+L+ +P + +LS+++TLRLA YI+ + ++L + +K E+G
Sbjct: 123 QLRRKVPTFAYEKRLSRIETLRLAIVYISFMTELLESCEKKESG 166
>gi|116517330 factor in the germline alpha [Homo sapiens]
Length = 219
Score = 51.6 bits (122), Expect = 4e-07
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 65 KKSPLSGVSQ-EGKQV---QRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDT 120
K+ P G S E Q+ +R ANA+ER R++ L++ F+RLK +P++P K SK+D
Sbjct: 47 KRLPSGGYSSTENLQLVLERRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDI 106
Query: 121 LRLASSYIAHLRQILANDK 139
L+ A+ YI L +L K
Sbjct: 107 LKGATEYIQVLSDLLEGAK 125
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.126 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,554,017
Number of Sequences: 37866
Number of extensions: 265145
Number of successful extensions: 1022
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 917
Number of HSP's gapped (non-prelim): 136
length of query: 179
length of database: 18,247,518
effective HSP length: 96
effective length of query: 83
effective length of database: 14,612,382
effective search space: 1212827706
effective search space used: 1212827706
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.