Guide to the Human Genome
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Search of human proteins with 38202237

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|38202237 transcription factor 21 [Homo sapiens]
         (179 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|38202237 transcription factor 21 [Homo sapiens]                    357   2e-99
gi|38202239 transcription factor 21 [Homo sapiens]                    357   2e-99
gi|116805332 musculin [Homo sapiens]                                  193   8e-50
gi|239749439 PREDICTED: similar to transcription factor 23 [Homo...    74   9e-14
gi|239743573 PREDICTED: similar to transcription factor 23 [Homo...    74   9e-14
gi|48255909 basic helix-loop-helix transcription factor 15 [Homo...    72   2e-13
gi|239754900 PREDICTED: similar to transcription factor 23 [Homo...    72   3e-13
gi|17981708 twist homolog 2 [Homo sapiens]                             69   2e-12
gi|148922889 scleraxis homolog B [Homo sapiens]                        69   3e-12
gi|186972126 scleraxis homolog A [Homo sapiens]                        69   3e-12
gi|75677394 transcription factor 23 [Homo sapiens]                     68   4e-12
gi|12545384 basic helix-loop-helix transcription factor HAND2 [H...    65   4e-11
gi|4507741 twist [Homo sapiens]                                        64   7e-11
gi|121114306 neurogenic differentiation 1 [Homo sapiens]               60   8e-10
gi|5031943 nescient helix loop helix 1 [Homo sapiens]                  59   2e-09
gi|4758506 basic helix-loop-helix transcription factor HAND1 [Ho...    59   2e-09
gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens]          59   2e-09
gi|27475985 neurogenic differentiation 6 [Homo sapiens]                59   3e-09
gi|153792190 neurogenic differentiation 4 [Homo sapiens]               58   4e-09
gi|98986461 neurogenic differentiation 2 [Homo sapiens]                57   8e-09
gi|68989258 neurogenin 3 [Homo sapiens]                                56   1e-08
gi|4885075 atonal homolog 1 [Homo sapiens]                             56   2e-08
gi|30039710 pancreas specific transcription factor, 1a [Homo sap...    56   2e-08
gi|21553337 atonal homolog 7 [Homo sapiens]                            56   2e-08
gi|161484632 nescient helix loop helix 2 [Homo sapiens]                55   4e-08
gi|5031945 nescient helix loop helix 2 [Homo sapiens]                  55   4e-08
gi|31077092 neurogenin 2 [Homo sapiens]                                53   2e-07
gi|29126247 basic helix-loop-helix family, member a15 [Homo sapi...    52   2e-07
gi|23097242 nephew of atonal 3 [Homo sapiens]                          52   2e-07
gi|116517330 factor in the germline alpha [Homo sapiens]               52   4e-07

>gi|38202237 transcription factor 21 [Homo sapiens]
          Length = 179

 Score =  357 bits (917), Expect = 2e-99
 Identities = 179/179 (100%), Positives = 179/179 (100%)

Query: 1   MSTGSLSDVEDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRR 60
           MSTGSLSDVEDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRR
Sbjct: 1   MSTGSLSDVEDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRR 60

Query: 61  KAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDT 120
           KAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDT
Sbjct: 61  KAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDT 120

Query: 121 LRLASSYIAHLRQILANDKYENGYIHPVNLTWPFMVAGKPESDLKEVVTASRLCGTTAS 179
           LRLASSYIAHLRQILANDKYENGYIHPVNLTWPFMVAGKPESDLKEVVTASRLCGTTAS
Sbjct: 121 LRLASSYIAHLRQILANDKYENGYIHPVNLTWPFMVAGKPESDLKEVVTASRLCGTTAS 179


>gi|38202239 transcription factor 21 [Homo sapiens]
          Length = 179

 Score =  357 bits (917), Expect = 2e-99
 Identities = 179/179 (100%), Positives = 179/179 (100%)

Query: 1   MSTGSLSDVEDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRR 60
           MSTGSLSDVEDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRR
Sbjct: 1   MSTGSLSDVEDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRR 60

Query: 61  KAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDT 120
           KAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDT
Sbjct: 61  KAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDT 120

Query: 121 LRLASSYIAHLRQILANDKYENGYIHPVNLTWPFMVAGKPESDLKEVVTASRLCGTTAS 179
           LRLASSYIAHLRQILANDKYENGYIHPVNLTWPFMVAGKPESDLKEVVTASRLCGTTAS
Sbjct: 121 LRLASSYIAHLRQILANDKYENGYIHPVNLTWPFMVAGKPESDLKEVVTASRLCGTTAS 179


>gi|116805332 musculin [Homo sapiens]
          Length = 206

 Score =  193 bits (490), Expect = 8e-50
 Identities = 112/206 (54%), Positives = 135/206 (65%), Gaps = 28/206 (13%)

Query: 1   MSTGSLSDVEDLQ--------EVEMLECDGLK-MDSNKEFVTSNESTEE----------- 40
           MSTGS+SD E+++         V   +   L+ ++ +    + N S EE           
Sbjct: 1   MSTGSVSDPEEMELRGLQREYPVPASKRPPLRGVERSYASPSDNSSAEEEDPDGEEERCA 60

Query: 41  ------SSNCENGSPQ-KGRGGLGKRRKAPTKKS-PLSGVSQEGKQVQRNAANARERARM 92
                 +  C+   P+  G GG G       KK  P  G + E KQ QRNAANARERARM
Sbjct: 61  LGTAGSAEGCKRKRPRVAGGGGAGGSAGGGGKKPLPAKGSAAECKQSQRNAANARERARM 120

Query: 93  RVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYENGYIHPVNLTW 152
           RVLSKAFSRLKT+LPWVPPDTKLSKLDTLRLASSYIAHLRQ+L  D+YENGY+HPVNLTW
Sbjct: 121 RVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYENGYVHPVNLTW 180

Query: 153 PFMVAGKPESDLKEVVTASRLCGTTA 178
           PF+V+G+P+SD KEV  A+RLCGTTA
Sbjct: 181 PFVVSGRPDSDTKEVSAANRLCGTTA 206


>gi|239749439 PREDICTED: similar to transcription factor 23 [Homo
           sapiens]
          Length = 167

 Score = 73.6 bits (179), Expect = 9e-14
 Identities = 47/105 (44%), Positives = 58/105 (55%), Gaps = 13/105 (12%)

Query: 60  RKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLD 119
           R  P    P  G S+ G      A  ARER+R++ L  AF  L+ TLP VPPDTKLSKLD
Sbjct: 31  RTGPGPAGP-GGGSRSGSGRPAAANAARERSRVQTLRHAFLELQRTLPSVPPDTKLSKLD 89

Query: 120 TLRLASSYIAHLRQILANDKYE-----------NGYIHPVNLTWP 153
            L LA++YIAHL + L +D              +GY+HPV   WP
Sbjct: 90  VLLLATTYIAHLTRSLQDDAEAPADAGLGALRGDGYLHPVK-KWP 133


>gi|239743573 PREDICTED: similar to transcription factor 23 [Homo
           sapiens]
          Length = 167

 Score = 73.6 bits (179), Expect = 9e-14
 Identities = 47/105 (44%), Positives = 58/105 (55%), Gaps = 13/105 (12%)

Query: 60  RKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLD 119
           R  P    P  G S+ G      A  ARER+R++ L  AF  L+ TLP VPPDTKLSKLD
Sbjct: 31  RTGPGPAGP-GGGSRSGSGRPAAANAARERSRVQTLRHAFLELQRTLPSVPPDTKLSKLD 89

Query: 120 TLRLASSYIAHLRQILANDKYE-----------NGYIHPVNLTWP 153
            L LA++YIAHL + L +D              +GY+HPV   WP
Sbjct: 90  VLLLATTYIAHLTRSLQDDAEAPADAGLGALRGDGYLHPVK-KWP 133


>gi|48255909 basic helix-loop-helix transcription factor 15 [Homo
           sapiens]
          Length = 199

 Score = 72.4 bits (176), Expect = 2e-13
 Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 9/114 (7%)

Query: 25  MDSNKEFVTSNESTEESSNCENGSPQKGRG---GLGKRRKAPTKKSPLSGVSQEGKQVQR 81
           +  ++E  + ++++++S  C  G     RG   G G+R        P+  V Q      R
Sbjct: 21  LSEDEENRSESDASDQSFGCCEGPEAARRGPGPGGGRRAGGGGGAGPVVVVRQ------R 74

Query: 82  NAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQIL 135
            AANARER R + ++ AF+ L+T +P  P D KLSK++TLRLASSYIAHL  +L
Sbjct: 75  QAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIETLRLASSYIAHLANVL 128


>gi|239754900 PREDICTED: similar to transcription factor 23 [Homo
           sapiens]
          Length = 167

 Score = 71.6 bits (174), Expect = 3e-13
 Identities = 43/92 (46%), Positives = 55/92 (59%), Gaps = 14/92 (15%)

Query: 73  SQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLR 132
           S  G+    NAA  RER+R++ L  AF  ++ TLP VPPDTKLSKLD L LA++YIAHL 
Sbjct: 45  SGSGRPAAENAA--RERSRVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLT 102

Query: 133 QILANDKYE-----------NGYIHPVNLTWP 153
           + L +D              +GY+HPV   WP
Sbjct: 103 RSLQDDAEAPADAGLGALRGDGYLHPVK-KWP 133


>gi|17981708 twist homolog 2 [Homo sapiens]
          Length = 160

 Score = 69.3 bits (168), Expect = 2e-12
 Identities = 50/133 (37%), Positives = 72/133 (54%), Gaps = 17/133 (12%)

Query: 29  KEFVTSNESTEESSNCENGSPQKGRGGLGKRRKAPTKKSPLSGVSQEGKQVQRNAANARE 88
           K F      +++SS  E+GSP  G+ G         KK   S  S E  Q QR  AN RE
Sbjct: 27  KRFGRKRRYSKKSS--EDGSPTPGKRG---------KKGSPSAQSFEELQSQRILANVRE 75

Query: 89  RARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYEN-----G 143
           R R + L++AF+ L+  +P +P D KLSK+ TL+LA+ YI  L Q+L +D+ +N      
Sbjct: 76  RQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCS 134

Query: 144 YIHPVNLTWPFMV 156
           Y+    L++ F V
Sbjct: 135 YVAHERLSYAFSV 147


>gi|148922889 scleraxis homolog B [Homo sapiens]
          Length = 201

 Score = 68.6 bits (166), Expect = 3e-12
 Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 9/106 (8%)

Query: 39  EESSNCENGSPQK------GRGGL-GKRRKAPTKKSPLSGVS-QEGKQV-QRNAANARER 89
           E+  +  +GS +K       R GL G RR+A  +++   G   + G++  QR+ ANARER
Sbjct: 26  EDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTANARER 85

Query: 90  ARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQIL 135
            R   ++ AF+ L+T +P  P D KLSK++TLRLASSYI+HL  +L
Sbjct: 86  DRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131


>gi|186972126 scleraxis homolog A [Homo sapiens]
          Length = 201

 Score = 68.6 bits (166), Expect = 3e-12
 Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 9/106 (8%)

Query: 39  EESSNCENGSPQK------GRGGL-GKRRKAPTKKSPLSGVS-QEGKQV-QRNAANARER 89
           E+  +  +GS +K       R GL G RR+A  +++   G   + G++  QR+ ANARER
Sbjct: 26  EDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTANARER 85

Query: 90  ARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQIL 135
            R   ++ AF+ L+T +P  P D KLSK++TLRLASSYI+HL  +L
Sbjct: 86  DRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131


>gi|75677394 transcription factor 23 [Homo sapiens]
          Length = 214

 Score = 68.2 bits (165), Expect = 4e-12
 Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 10/103 (9%)

Query: 60  RKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLD 119
           R  P  +   +G    G+        ARER+R+R L +AF  L+  LP VPPDTKLSKLD
Sbjct: 57  RATPGPRGTRAGGLALGRSEASPENAARERSRVRTLRQAFLALQAALPAVPPDTKLSKLD 116

Query: 120 TLRLASSYIAHLRQILAND-------KYENG--YIHPVNLTWP 153
            L LA+SYIAHL + L ++        +  G  Y+HP+   WP
Sbjct: 117 VLVLAASYIAHLTRTLGHELPGPAWPPFLRGLRYLHPLK-KWP 158


>gi|12545384 basic helix-loop-helix transcription factor HAND2 [Homo
           sapiens]
          Length = 217

 Score = 64.7 bits (156), Expect = 4e-11
 Identities = 33/64 (51%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 80  QRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDK 139
           +R  AN +ER R + ++ AF+ L+  +P VP DTKLSK+ TLRLA+SYIA+L  +LA D 
Sbjct: 100 RRGTANRKERRRTQSINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDLLAKDD 159

Query: 140 YENG 143
            +NG
Sbjct: 160 -QNG 162


>gi|4507741 twist [Homo sapiens]
          Length = 202

 Score = 63.9 bits (154), Expect = 7e-11
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 14/123 (11%)

Query: 39  EESSNCENGSPQKGRGGLGKRRKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKA 98
           ++S+ C  G    G GG      +P         S E  Q QR  AN RER R + L++A
Sbjct: 76  KKSAGCGGGGGAGGGGGSSSGGGSPQ--------SYEELQTQRVMANVRERQRTQSLNEA 127

Query: 99  FSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYEN-----GYIHPVNLTWP 153
           F+ L+  +P +P D KLSK+ TL+LA+ YI  L Q+L +D+ ++      Y+    L++ 
Sbjct: 128 FAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSDELDSKMASCSYVAHERLSYA 186

Query: 154 FMV 156
           F V
Sbjct: 187 FSV 189


>gi|121114306 neurogenic differentiation 1 [Homo sapiens]
          Length = 356

 Score = 60.5 bits (145), Expect = 8e-10
 Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 1/135 (0%)

Query: 6   LSDVEDLQEVEMLECDGLKMDSNKEFVTSN-ESTEESSNCENGSPQKGRGGLGKRRKAPT 64
           LS  ++  E +  E D   M++ ++ + +  E  +E  + E    ++      K ++   
Sbjct: 27  LSSQDEEHEADKKEDDLEAMNAEEDSLRNGGEEEDEDEDLEEEEEEEEEDDDQKPKRRGP 86

Query: 65  KKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLA 124
           KK  ++    E  +++R  ANARER RM  L+ A   L+  +P      KLSK++TLRLA
Sbjct: 87  KKKKMTKARLERFKLRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLA 146

Query: 125 SSYIAHLRQILANDK 139
            +YI  L +IL + K
Sbjct: 147 KNYIWALSEILRSGK 161


>gi|5031943 nescient helix loop helix 1 [Homo sapiens]
          Length = 133

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 17/133 (12%)

Query: 17  MLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGK---RRKAPTKKSP----L 69
           ML  D +++D      T +E+    S+C  G+   G G  G    + + P    P    L
Sbjct: 2   MLNSDTMELDLPP---THSETESGFSDCGGGAGPDGAGPGGPGGGQARGPEPGEPGRKDL 58

Query: 70  SGVSQEGKQVQRNAAN-------ARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLR 122
             +S+E ++ +R A          RER R+   + AF+ L+  LP +PPD KLSK++ LR
Sbjct: 59  QHLSREERRRRRRATAKYRTAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR 118

Query: 123 LASSYIAHLRQIL 135
           LA  YI++L  +L
Sbjct: 119 LAICYISYLNHVL 131


>gi|4758506 basic helix-loop-helix transcription factor HAND1 [Homo
           sapiens]
          Length = 215

 Score = 58.9 bits (141), Expect = 2e-09
 Identities = 28/59 (47%), Positives = 41/59 (69%)

Query: 80  QRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILAND 138
           ++ +   +ER R   ++ AF+ L+  +P VP DTKLSK+ TLRLA+SYIA+L  +LA D
Sbjct: 95  RKGSGPKKERRRTESINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDVLAKD 153


>gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens]
          Length = 331

 Score = 58.9 bits (141), Expect = 2e-09
 Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 13/130 (10%)

Query: 58  KRRKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSK 117
           KRR +P +     G     K V+R   N+RER R + ++ AF+ L+  +P  PPD KLSK
Sbjct: 168 KRRPSPYEMEITDG--PHTKVVRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSK 225

Query: 118 LDTLRLASSYIAHLRQILANDKYENGYIHPVNLTWPFMVAG----------KPESDLKEV 167
            + LRLA  YI  L ++L ND+ E G         P + AG           P+  L++V
Sbjct: 226 NEILRLAMKYINFLAKLL-NDQEEEGTQRAKTGKDPVVGAGGGGGGGGGGAPPDDLLQDV 284

Query: 168 VTASRLCGTT 177
           ++ +  CG++
Sbjct: 285 LSPNSSCGSS 294


>gi|27475985 neurogenic differentiation 6 [Homo sapiens]
          Length = 337

 Score = 58.5 bits (140), Expect = 3e-09
 Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 10/126 (7%)

Query: 10  EDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRRKAPTKKSPL 69
           E   +  +L    +K    +E     E  +     ENG P++     G R+K  TK    
Sbjct: 35  ESFSKQIVLRGKSIKRAPGEETEKEEEEEDREEEDENGLPRRR----GLRKKKTTK---- 86

Query: 70  SGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIA 129
             +  E  + +R  ANARER RM  L+ A   L+  +P      KLSK++TLRLA +YI 
Sbjct: 87  --LRLERVKFRRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIW 144

Query: 130 HLRQIL 135
            L +IL
Sbjct: 145 ALSEIL 150


>gi|153792190 neurogenic differentiation 4 [Homo sapiens]
          Length = 331

 Score = 58.2 bits (139), Expect = 4e-09
 Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 2/106 (1%)

Query: 38  TEESSNCENGSPQKGRGGLGKRRKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSK 97
           TEE  + E    ++  G   KRR    KK  ++    E  + +R  ANARER RM  L+ 
Sbjct: 48  TEEHDSIEEEEEEEEDGEKPKRRGP--KKKKMTKARLERFRARRVKANARERTRMHGLND 105

Query: 98  AFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYENG 143
           A   L+  +P      KLSK++TLRLA +YI  L ++L   +   G
Sbjct: 106 ALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLETGQTPEG 151


>gi|98986461 neurogenic differentiation 2 [Homo sapiens]
          Length = 382

 Score = 57.0 bits (136), Expect = 8e-09
 Identities = 38/104 (36%), Positives = 52/104 (50%), Gaps = 9/104 (8%)

Query: 36  ESTEESSNCENGSPQKGRGGLGKRRKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVL 95
           E  EE  +   G   K RG          KK  ++    E  +++R  ANARER RM  L
Sbjct: 87  EEEEEGLDEAEGERPKKRG---------PKKRKMTKARLERSKLRRQKANARERNRMHDL 137

Query: 96  SKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDK 139
           + A   L+  +P      KLSK++TLRLA +YI  L +IL + K
Sbjct: 138 NAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGK 181


>gi|68989258 neurogenin 3 [Homo sapiens]
          Length = 214

 Score = 56.2 bits (134), Expect = 1e-08
 Identities = 40/101 (39%), Positives = 54/101 (53%), Gaps = 6/101 (5%)

Query: 35  NESTEESSNCENGSPQKGRGGLGKRRKAPTKKSPLSGVSQEGKQVQRNAANARERARMRV 94
           N +  E   C  G+P+K R   G R +    KS L+   Q  ++ +R  AN RER RM  
Sbjct: 45  NCAEAEEGGCR-GAPRKLRARRGGRSRP---KSELALSKQ--RRSRRKKANDRERNRMHN 98

Query: 95  LSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQIL 135
           L+ A   L+  LP  P D KL+K++TLR A +YI  L Q L
Sbjct: 99  LNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTL 139


>gi|4885075 atonal homolog 1 [Homo sapiens]
          Length = 354

 Score = 55.8 bits (133), Expect = 2e-08
 Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 5/77 (6%)

Query: 59  RRKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKL 118
           R++AP+ K  ++GV ++    +R AANARER RM  L+ AF +L+  +P    D KLSK 
Sbjct: 144 RQRAPSSKQ-VNGVQKQ----RRLAANARERRRMHGLNHAFDQLRNVIPSFNNDKKLSKY 198

Query: 119 DTLRLASSYIAHLRQIL 135
           +TL++A  YI  L ++L
Sbjct: 199 ETLQMAQIYINALSELL 215


>gi|30039710 pancreas specific transcription factor, 1a [Homo
           sapiens]
          Length = 328

 Score = 55.8 bits (133), Expect = 2e-08
 Identities = 29/66 (43%), Positives = 43/66 (65%)

Query: 73  SQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLR 132
           S+   Q  R AAN RER RM+ ++ AF  L++ +P +P + +LSK+DTLRLA  YI  L 
Sbjct: 157 SEAELQQLRQAANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLAIGYINFLS 216

Query: 133 QILAND 138
           +++  D
Sbjct: 217 ELVQAD 222


>gi|21553337 atonal homolog 7 [Homo sapiens]
          Length = 152

 Score = 55.8 bits (133), Expect = 2e-08
 Identities = 31/57 (54%), Positives = 40/57 (70%)

Query: 80  QRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILA 136
           +R AANARER RM+ L+ AF RL+  +P    D KLSK +TL++A SYI  L +ILA
Sbjct: 41  RRLAANARERRRMQGLNTAFDRLRRVVPQWGQDKKLSKYETLQMALSYIMALTRILA 97


>gi|161484632 nescient helix loop helix 2 [Homo sapiens]
          Length = 135

 Score = 54.7 bits (130), Expect = 4e-08
 Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 28/133 (21%)

Query: 3   TGSLSDVEDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRRKA 62
           T  L  V DL+ VE  E DG        +    + + E                 +RR+A
Sbjct: 29  TKVLGSVSDLEPVEEAEGDGKGGSRAALYPHPQQLSREEKR--------------RRRRA 74

Query: 63  PTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLR 122
             K               R+A   RER R+   + AF+ L+  LP +PPD KLSK++ LR
Sbjct: 75  TAK--------------YRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR 120

Query: 123 LASSYIAHLRQIL 135
           LA  YI++L  +L
Sbjct: 121 LAICYISYLNHVL 133


>gi|5031945 nescient helix loop helix 2 [Homo sapiens]
          Length = 135

 Score = 54.7 bits (130), Expect = 4e-08
 Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 28/133 (21%)

Query: 3   TGSLSDVEDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRRKA 62
           T  L  V DL+ VE  E DG        +    + + E                 +RR+A
Sbjct: 29  TKVLGSVSDLEPVEEAEGDGKGGSRAALYPHPQQLSREEKR--------------RRRRA 74

Query: 63  PTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLR 122
             K               R+A   RER R+   + AF+ L+  LP +PPD KLSK++ LR
Sbjct: 75  TAK--------------YRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR 120

Query: 123 LASSYIAHLRQIL 135
           LA  YI++L  +L
Sbjct: 121 LAICYISYLNHVL 133


>gi|31077092 neurogenin 2 [Homo sapiens]
          Length = 272

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 30/77 (38%), Positives = 44/77 (57%)

Query: 59  RRKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKL 118
           R +A ++ +  +   Q  K+ +R  AN RER RM  L+ A   L+  LP  P D KL+K+
Sbjct: 92  RARAVSRGAKTAETVQRIKKTRRLKANNRERNRMHNLNAALDALREVLPTFPEDAKLTKI 151

Query: 119 DTLRLASSYIAHLRQIL 135
           +TLR A +YI  L + L
Sbjct: 152 ETLRFAHNYIWALTETL 168


>gi|29126247 basic helix-loop-helix family, member a15 [Homo
           sapiens]
          Length = 189

 Score = 52.4 bits (124), Expect = 2e-07
 Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 17/112 (15%)

Query: 33  TSNESTEESSNCENGSPQKGRG-------------GLGKRRKAPTKKSPLSGVSQEGKQV 79
           T  E T + S   N  P+  +G             G G+RR+ P    P  G  ++    
Sbjct: 20  TPGEGTPDGS-LPNPGPEPAKGLRSRPARAAARAPGEGRRRR-PGPSGP--GGRRDSSIQ 75

Query: 80  QRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHL 131
           +R  +N RER RM  L+ AF  L+  +P V  D KLSK++TL LA +YI  L
Sbjct: 76  RRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSL 127


>gi|23097242 nephew of atonal 3 [Homo sapiens]
          Length = 166

 Score = 52.4 bits (124), Expect = 2e-07
 Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 18/104 (17%)

Query: 45  ENGSPQKGRG----GLGKRRKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFS 100
           E    ++GRG    G  KR++  T               QR AAN RER RM  L++AF 
Sbjct: 76  EEEEEERGRGVSLLGRPKRKRVIT-------------YAQRQAANIRERKRMFNLNEAFD 122

Query: 101 RLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILAN-DKYENG 143
           +L+  +P    + +LS+++TLRLA  YI+ + ++L + +K E+G
Sbjct: 123 QLRRKVPTFAYEKRLSRIETLRLAIVYISFMTELLESCEKKESG 166


>gi|116517330 factor in the germline alpha [Homo sapiens]
          Length = 219

 Score = 51.6 bits (122), Expect = 4e-07
 Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 4/79 (5%)

Query: 65  KKSPLSGVSQ-EGKQV---QRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDT 120
           K+ P  G S  E  Q+   +R  ANA+ER R++ L++ F+RLK  +P++P   K SK+D 
Sbjct: 47  KRLPSGGYSSTENLQLVLERRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDI 106

Query: 121 LRLASSYIAHLRQILANDK 139
           L+ A+ YI  L  +L   K
Sbjct: 107 LKGATEYIQVLSDLLEGAK 125


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.310    0.126    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,554,017
Number of Sequences: 37866
Number of extensions: 265145
Number of successful extensions: 1022
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 917
Number of HSP's gapped (non-prelim): 136
length of query: 179
length of database: 18,247,518
effective HSP length: 96
effective length of query: 83
effective length of database: 14,612,382
effective search space: 1212827706
effective search space used: 1212827706
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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