Search of human proteins with 38146109

Search of human proteins with 38146109

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|38146109 arginine/serine-rich coiled-coil 2 isoform c [Homo
sapiens]
         (202 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo s...   392   e-109
gi|38146109 arginine/serine-rich coiled-coil 2 isoform c [Homo s...   392   e-109
gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo s...   392   e-109
gi|7657234 small acidic protein isoform a [Homo sapiens]               37   0.009
gi|111607441 hypothetical protein LOC400506 [Homo sapiens]             37   0.015
gi|226442791 runt-related transcription factor 2 isoform b [Homo...    33   0.13 
gi|226442783 runt-related transcription factor 2 isoform a [Homo...    33   0.13 
gi|66934969 runt-related transcription factor 2 isoform c [Homo ...    33   0.13 
gi|21735548 centrosomal protein 2 [Homo sapiens]                       33   0.13 
gi|5454104 transcriptional adaptor 3-like isoform a [Homo sapiens]     33   0.13 
gi|22027541 programmed cell death 7 [Homo sapiens]                     33   0.13 
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa...    33   0.16 
gi|239751150 PREDICTED: hypothetical protein XP_002347731 [Homo ...    33   0.22 
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ...    33   0.22 
gi|61676108 cytoplasmic tRNA 2-thiolation protein 2 isoform 2 [H...    33   0.22 
gi|61676106 cytoplasmic tRNA 2-thiolation protein 2 isoform 1 [H...    33   0.22 
gi|78000158 eukaryotic translation initiation factor 2B, subunit...    33   0.22 
gi|195976782 Paf1/RNA polymerase II complex component [Homo sapi...    32   0.28 
gi|134152708 arginine and glutamate rich 1 [Homo sapiens]              32   0.28 
gi|102467235 inner centromere protein antigens 135/155kDa isofor...    32   0.28 
gi|102467242 inner centromere protein antigens 135/155kDa isofor...    32   0.28 
gi|40354197 THAP domain containing 11 [Homo sapiens]                   32   0.37 
gi|78000156 eukaryotic translation initiation factor 2B, subunit...    32   0.37 
gi|187607323 eukaryotic translation initiation factor 2B, subuni...    32   0.37 
gi|94721334 hypothetical protein LOC54629 isoform a [Homo sapiens]     32   0.37 
gi|94721338 hypothetical protein LOC54629 isoform b [Homo sapiens]     32   0.37 
gi|7662302 TBK1 binding protein 1 [Homo sapiens]                       32   0.48 
gi|56549694 enabled homolog isoform a [Homo sapiens]                   31   0.63 
gi|39930375 enabled homolog isoform b [Homo sapiens]                   31   0.63 
gi|27262628 nuclear autoantigenic sperm protein isoform 2 [Homo ...    31   0.63 

>gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo
           sapiens]
          Length = 375

 Score =  392 bits (1007), Expect = e-109
 Identities = 202/202 (100%), Positives = 202/202 (100%)

Query: 1   MDAQEALARRLERAKKLQEQREKEMVEKQKQQEIAAAAATGGSVLNVAALLASGTQVTPQ 60
           MDAQEALARRLERAKKLQEQREKEMVEKQKQQEIAAAAATGGSVLNVAALLASGTQVTPQ
Sbjct: 174 MDAQEALARRLERAKKLQEQREKEMVEKQKQQEIAAAAATGGSVLNVAALLASGTQVTPQ 233

Query: 61  IAMAAQMAALQAKALAETGIAVPSYYNPAAVNPMKFAEQEKKRKMLWQGKKEGDKSQSAE 120
           IAMAAQMAALQAKALAETGIAVPSYYNPAAVNPMKFAEQEKKRKMLWQGKKEGDKSQSAE
Sbjct: 234 IAMAAQMAALQAKALAETGIAVPSYYNPAAVNPMKFAEQEKKRKMLWQGKKEGDKSQSAE 293

Query: 121 IWEKLNFGNKDQNVKFRKLMGIKSEDEAGCSSVDEESYKTLKQQEEVFRNLDAQYEMARS 180
           IWEKLNFGNKDQNVKFRKLMGIKSEDEAGCSSVDEESYKTLKQQEEVFRNLDAQYEMARS
Sbjct: 294 IWEKLNFGNKDQNVKFRKLMGIKSEDEAGCSSVDEESYKTLKQQEEVFRNLDAQYEMARS 353

Query: 181 QTHTQRGMGLGFTSSMRGMDAV 202
           QTHTQRGMGLGFTSSMRGMDAV
Sbjct: 354 QTHTQRGMGLGFTSSMRGMDAV 375


>gi|38146109 arginine/serine-rich coiled-coil 2 isoform c [Homo
           sapiens]
          Length = 202

 Score =  392 bits (1007), Expect = e-109
 Identities = 202/202 (100%), Positives = 202/202 (100%)

Query: 1   MDAQEALARRLERAKKLQEQREKEMVEKQKQQEIAAAAATGGSVLNVAALLASGTQVTPQ 60
           MDAQEALARRLERAKKLQEQREKEMVEKQKQQEIAAAAATGGSVLNVAALLASGTQVTPQ
Sbjct: 1   MDAQEALARRLERAKKLQEQREKEMVEKQKQQEIAAAAATGGSVLNVAALLASGTQVTPQ 60

Query: 61  IAMAAQMAALQAKALAETGIAVPSYYNPAAVNPMKFAEQEKKRKMLWQGKKEGDKSQSAE 120
           IAMAAQMAALQAKALAETGIAVPSYYNPAAVNPMKFAEQEKKRKMLWQGKKEGDKSQSAE
Sbjct: 61  IAMAAQMAALQAKALAETGIAVPSYYNPAAVNPMKFAEQEKKRKMLWQGKKEGDKSQSAE 120

Query: 121 IWEKLNFGNKDQNVKFRKLMGIKSEDEAGCSSVDEESYKTLKQQEEVFRNLDAQYEMARS 180
           IWEKLNFGNKDQNVKFRKLMGIKSEDEAGCSSVDEESYKTLKQQEEVFRNLDAQYEMARS
Sbjct: 121 IWEKLNFGNKDQNVKFRKLMGIKSEDEAGCSSVDEESYKTLKQQEEVFRNLDAQYEMARS 180

Query: 181 QTHTQRGMGLGFTSSMRGMDAV 202
           QTHTQRGMGLGFTSSMRGMDAV
Sbjct: 181 QTHTQRGMGLGFTSSMRGMDAV 202


>gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo
           sapiens]
          Length = 434

 Score =  392 bits (1007), Expect = e-109
 Identities = 202/202 (100%), Positives = 202/202 (100%)

Query: 1   MDAQEALARRLERAKKLQEQREKEMVEKQKQQEIAAAAATGGSVLNVAALLASGTQVTPQ 60
           MDAQEALARRLERAKKLQEQREKEMVEKQKQQEIAAAAATGGSVLNVAALLASGTQVTPQ
Sbjct: 233 MDAQEALARRLERAKKLQEQREKEMVEKQKQQEIAAAAATGGSVLNVAALLASGTQVTPQ 292

Query: 61  IAMAAQMAALQAKALAETGIAVPSYYNPAAVNPMKFAEQEKKRKMLWQGKKEGDKSQSAE 120
           IAMAAQMAALQAKALAETGIAVPSYYNPAAVNPMKFAEQEKKRKMLWQGKKEGDKSQSAE
Sbjct: 293 IAMAAQMAALQAKALAETGIAVPSYYNPAAVNPMKFAEQEKKRKMLWQGKKEGDKSQSAE 352

Query: 121 IWEKLNFGNKDQNVKFRKLMGIKSEDEAGCSSVDEESYKTLKQQEEVFRNLDAQYEMARS 180
           IWEKLNFGNKDQNVKFRKLMGIKSEDEAGCSSVDEESYKTLKQQEEVFRNLDAQYEMARS
Sbjct: 353 IWEKLNFGNKDQNVKFRKLMGIKSEDEAGCSSVDEESYKTLKQQEEVFRNLDAQYEMARS 412

Query: 181 QTHTQRGMGLGFTSSMRGMDAV 202
           QTHTQRGMGLGFTSSMRGMDAV
Sbjct: 413 QTHTQRGMGLGFTSSMRGMDAV 434


>gi|7657234 small acidic protein isoform a [Homo sapiens]
          Length = 183

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 20/87 (22%), Positives = 44/87 (50%), Gaps = 7/87 (8%)

Query: 114 DKSQSAEIWEKLNFGNKDQNVKFRKLMGIKSEDEAGCSSVDEES----YKTLKQQEEVFR 169
           D    +  WE  + GN+++  KF +LMG   ++  G   + +      ++T ++ +++  
Sbjct: 19  DDDLGSSNWEAADLGNEERKQKFLRLMGAGKKEHTGRLVIGDHKSTSHFRTGEEDKKINE 78

Query: 170 NLDAQYEM---ARSQTHTQRGMGLGFT 193
            L++QY+    ++     +R  GLGF+
Sbjct: 79  ELESQYQQSMDSKLSGRYRRHCGLGFS 105


>gi|111607441 hypothetical protein LOC400506 [Homo sapiens]
          Length = 458

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 16/113 (14%)

Query: 98  EQEKKRKMLWQGKKEGDKSQSAEI----------WEKLNFGNKDQNVKFRKLMG----IK 143
           +Q +++ +  +  +E  K++++E           W+   F N+DQ +KF +LMG    + 
Sbjct: 328 DQVRRKALQEEIDRESGKTEASETRKWTGTQFGQWDTAGFENEDQKLKFLRLMGGFKNLS 387

Query: 144 SEDEAGCSSVDEESYKT-LKQQEEVFRNLDAQYEMARSQTHTQRGMGLGFTSS 195
                  S++   +     K  + + +NL   Y+ A S  ++ RG GLGF+++
Sbjct: 388 PSFSRPASTIARPNMALGKKAADSLQQNLQRDYDRAMSWKYS-RGAGLGFSTA 439


>gi|226442791 runt-related transcription factor 2 isoform b [Homo
          sapiens]
          Length = 499

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 15/48 (31%), Positives = 30/48 (62%)

Query: 2  DAQEALARRLERAKKLQEQREKEMVEKQKQQEIAAAAATGGSVLNVAA 49
          D    +A + ++ ++ Q+Q++++  ++Q+QQE AAAAA   +    AA
Sbjct: 41 DVSPVVAAQQQQQQQQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAA 88



 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/41 (29%), Positives = 26/41 (63%)

Query: 12 ERAKKLQEQREKEMVEKQKQQEIAAAAATGGSVLNVAALLA 52
          ++ ++ Q+Q++++  ++Q+QQ+  AAAA   +    AA  A
Sbjct: 49 QQQQQQQQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAA 89


>gi|226442783 runt-related transcription factor 2 isoform a [Homo
          sapiens]
          Length = 521

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 15/48 (31%), Positives = 30/48 (62%)

Query: 2  DAQEALARRLERAKKLQEQREKEMVEKQKQQEIAAAAATGGSVLNVAA 49
          D    +A + ++ ++ Q+Q++++  ++Q+QQE AAAAA   +    AA
Sbjct: 41 DVSPVVAAQQQQQQQQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAA 88



 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/41 (29%), Positives = 26/41 (63%)

Query: 12 ERAKKLQEQREKEMVEKQKQQEIAAAAATGGSVLNVAALLA 52
          ++ ++ Q+Q++++  ++Q+QQ+  AAAA   +    AA  A
Sbjct: 49 QQQQQQQQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAA 89


>gi|66934969 runt-related transcription factor 2 isoform c [Homo
          sapiens]
          Length = 507

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 15/48 (31%), Positives = 30/48 (62%)

Query: 2  DAQEALARRLERAKKLQEQREKEMVEKQKQQEIAAAAATGGSVLNVAA 49
          D    +A + ++ ++ Q+Q++++  ++Q+QQE AAAAA   +    AA
Sbjct: 27 DVSPVVAAQQQQQQQQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAA 74



 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/41 (29%), Positives = 26/41 (63%)

Query: 12 ERAKKLQEQREKEMVEKQKQQEIAAAAATGGSVLNVAALLA 52
          ++ ++ Q+Q++++  ++Q+QQ+  AAAA   +    AA  A
Sbjct: 35 QQQQQQQQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAA 75


>gi|21735548 centrosomal protein 2 [Homo sapiens]
          Length = 2442

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 45/190 (23%), Positives = 87/190 (45%), Gaps = 30/190 (15%)

Query: 5   EALARRLERAKKLQEQREKEMVEKQKQQEIAAAAATGGSVLNVAALLASG----TQVTPQ 60
           E+L+  +   + L+    +  + +Q+Q E+ AA A      ++A L +S     T+V   
Sbjct: 537 ESLSELITLREALESSHLEGELLRQEQTEVTAALARAEQ--SIAELSSSENTLKTEVADL 594

Query: 61  IAMAAQMAAL-QAKALAETGIAVPSYY----NPAAVNPMKFAEQ------------EKKR 103
            A A +++AL +A AL + G+          N +  + M+ AEQ            EK+R
Sbjct: 595 RAAAVKLSALNEALALDKVGLNQQLLQLEEENQSVCSRMEAAEQARNALQVDLAEAEKRR 654

Query: 104 KMLW------QGKKEGDKSQSAEIWEKLNFGNKDQNVKFRKLMGIKSEDEAGCSSVDEES 157
           + LW      + + +  +   AE+   L    +++    +KL   + + EA  + + E+ 
Sbjct: 655 EALWEKNTHLEAQLQKAEEAGAELQADLRDIQEEKEEIQKKLSESRHQQEAATTQL-EQL 713

Query: 158 YKTLKQQEEV 167
           ++  K+QEEV
Sbjct: 714 HQEAKRQEEV 723


>gi|5454104 transcriptional adaptor 3-like isoform a [Homo sapiens]
          Length = 432

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 89  AAVNPMKFAEQEKKRKMLWQGKKEGDKSQSAEIWEKLNFGNKDQNVKFRKLMGIKSEDEA 148
           A +  +    + KK  +L   K+E  +    E+ +++   + +    FRK+M  + +   
Sbjct: 351 AELKALSAHNRTKKHDLLRLAKEEVSRQ---ELRQRVRMADNEVMDAFRKIMAARQKKRT 407

Query: 149 GCSSVDEESYKTLKQQEEVFRNLD 172
                 ++++KTLK++E + + LD
Sbjct: 408 PTKKEKDQAWKTLKERESILKLLD 431


>gi|22027541 programmed cell death 7 [Homo sapiens]
          Length = 485

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 34/156 (21%)

Query: 8   ARRLERAKKLQEQREK---EMVEKQKQQEIAAAAATGGSVLNVAALLASGTQVTPQIAMA 64
           AR +ER +++   R K   E+ EK+++QE+ AAA   G +  V    A   ++   +   
Sbjct: 265 ARAVEREQEIDRWRVKCVQEVEEKKREQELKAAA--DGVLSEVRKKQADTKRMVDILRAL 322

Query: 65  AQMAALQAKALAETGIAVPSYYNPA------------------------AVNPMKFAEQE 100
            ++  L+ +A A  G+  P+  +                          A+  M   EQE
Sbjct: 323 EKLRKLRKEAAARKGVCPPASADETFTHHLQRLRKLIKKRSELYEAEERALRVMLEGEQE 382

Query: 101 KKRKMLWQGKKEGDKS----QSAEIWEKLNFGNKDQ 132
           ++RK   + K+  +K     Q  EI  KL FG+ D+
Sbjct: 383 EERKRELEKKQRKEKEKILLQKREIESKL-FGDPDE 417


>gi|84043963 eukaryotic translation initiation factor 5B [Homo
           sapiens]
          Length = 1220

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 13/156 (8%)

Query: 11  LERAKKLQEQREKEMVEKQKQQEIAAAAATGGSVLNVAALLASGTQVTPQIAMAAQMAAL 70
           LE  +K +E+ E+E  E++KQ+E                L   G  +T     A   A  
Sbjct: 372 LEAKRKEEERLEQEKRERKKQKEKE----------RKERLKKEGKLLTKSQREARARAEA 421

Query: 71  QAKALAETGIAVPSYYNPAAVNPMKFAEQEKKRKMLWQGKKEGDKSQSAEIWEKLNFGNK 130
             K L   G+ VPS  +     P+    ++KKRK + Q  +  + S+S E+   +    +
Sbjct: 422 TLKLLQAQGVEVPSKDSLPKKRPI---YEDKKRKKIPQQLESKEVSESMELCAAVEVMEQ 478

Query: 131 DQNVKFRKLMGIKSEDEAGCSSVDEESYKTLKQQEE 166
               K      ++ E+E        + ++ +   EE
Sbjct: 479 GVPEKEETPPPVEPEEEEDTEDAGLDDWEAMASDEE 514


>gi|239751150 PREDICTED: hypothetical protein XP_002347731 [Homo
           sapiens]
          Length = 248

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)

Query: 95  KFAEQEKKRKMLWQGKK-----EGDKSQSAEIWEKLNFGNKDQNVKFRKLMGIKSEDE-A 148
           KF     K ++++ G+K      G  S S+ +W+ L   ++D   + R + G+   DE A
Sbjct: 58  KFRAMLGKNRLIFPGEKVLLAWSGGPSSSSMVWQVLEGLSQDSAKRLRFVAGVIFVDEGA 117

Query: 149 GCSSVDEESYKTLKQQEEVFR 169
            C    EE  KTL + + + +
Sbjct: 118 ACGQSLEERSKTLAEVKPILQ 138


>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
            sapiens]
          Length = 1362

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 16/42 (38%), Positives = 26/42 (61%)

Query: 2    DAQEALARRLERAKKLQEQREKEMVEKQKQQEIAAAAATGGS 43
            DA E   R  E A++ QEQ++++  E+Q+QQ+  AAA    +
Sbjct: 1267 DALEQARRAHEEARRRQEQQQQQRQEQQQQQQQQAAAVAAAA 1308


>gi|61676108 cytoplasmic tRNA 2-thiolation protein 2 isoform 2 [Homo
           sapiens]
          Length = 485

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)

Query: 95  KFAEQEKKRKMLWQGKK-----EGDKSQSAEIWEKLNFGNKDQNVKFRKLMGIKSEDE-A 148
           KF     K ++++ G+K      G  S S+ +W+ L   ++D   + R + G+   DE A
Sbjct: 58  KFRAMLGKNRLIFPGEKVLLAWSGGPSSSSMVWQVLEGLSQDSAKRLRFVAGVIFVDEGA 117

Query: 149 GCSSVDEESYKTLKQQEEVFR 169
            C    EE  KTL + + + +
Sbjct: 118 ACGQSLEERSKTLAEVKPILQ 138


>gi|61676106 cytoplasmic tRNA 2-thiolation protein 2 isoform 1 [Homo
           sapiens]
          Length = 515

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)

Query: 95  KFAEQEKKRKMLWQGKK-----EGDKSQSAEIWEKLNFGNKDQNVKFRKLMGIKSEDE-A 148
           KF     K ++++ G+K      G  S S+ +W+ L   ++D   + R + G+   DE A
Sbjct: 58  KFRAMLGKNRLIFPGEKVLLAWSGGPSSSSMVWQVLEGLSQDSAKRLRFVAGVIFVDEGA 117

Query: 149 GCSSVDEESYKTLKQQEEVFR 169
            C    EE  KTL + + + +
Sbjct: 118 ACGQSLEERSKTLAEVKPILQ 138


>gi|78000158 eukaryotic translation initiation factor 2B, subunit 4
           delta isoform 2 [Homo sapiens]
          Length = 523

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 25/114 (21%)

Query: 6   ALARRLERAKKLQEQREKEMVEKQKQQEIAAAAATGGSVLNVAALLASGTQVTPQIAMAA 65
           A+ R + + +KLQ ++EK+  +K++++E  A   TG +V                   AA
Sbjct: 26  AVGREMTKEEKLQLRKEKKQQKKKRKEEKGAEPETGSAV------------------SAA 67

Query: 66  QMAALQAKALAETGI-------AVPSYYNPAAVNPMKFAEQEKKRKMLWQGKKE 112
           Q      + L E+GI        VP+  + A +   + A+QE +R +    K E
Sbjct: 68  QCQVGPTRELPESGIQLGTPREKVPAGRSKAELRAERRAKQEAERALKQARKGE 121


>gi|195976782 Paf1/RNA polymerase II complex component [Homo
           sapiens]
          Length = 710

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 1   MDAQEALARRLERAKKLQEQREKEMVEKQKQQE 33
           ++ +E L RR E  KKL+  ++KE  EK+K+QE
Sbjct: 212 IEKREVLKRRFEIKKKLKTAKKKEKKEKKKKQE 244


>gi|134152708 arginine and glutamate rich 1 [Homo sapiens]
          Length = 273

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 2   DAQEALARRLERAKKLQEQREKEMVEKQKQQEIAAAAA 39
           + +  + RR+E AK++ E++  E +E+Q+Q E+AA  A
Sbjct: 152 EIEREVLRRVEEAKRIMEKQLLEELERQRQAELAAQKA 189


>gi|102467235 inner centromere protein antigens 135/155kDa isoform 1
           [Homo sapiens]
          Length = 918

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 4   QEALARRLERAKKLQEQREKEMVEKQKQQEIAAAAATGGS-----VLNVAALLASGTQVT 58
           +E L R LE  KK +EQ+     + Q++QE  A  A G S      ++V +   +  Q+T
Sbjct: 748 KEQLQRELEEKKKKEEQQRLAERQLQEEQEKKAKEAAGASKALNVTVDVQSPACTSYQMT 807

Query: 59  PQ 60
           PQ
Sbjct: 808 PQ 809


>gi|102467242 inner centromere protein antigens 135/155kDa isoform 2
           [Homo sapiens]
          Length = 914

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 4   QEALARRLERAKKLQEQREKEMVEKQKQQEIAAAAATGGS-----VLNVAALLASGTQVT 58
           +E L R LE  KK +EQ+     + Q++QE  A  A G S      ++V +   +  Q+T
Sbjct: 744 KEQLQRELEEKKKKEEQQRLAERQLQEEQEKKAKEAAGASKALNVTVDVQSPACTSYQMT 803

Query: 59  PQ 60
           PQ
Sbjct: 804 PQ 805


>gi|40354197 THAP domain containing 11 [Homo sapiens]
          Length = 314

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 3   AQEALARRLERAKKLQEQREKEMVEKQKQQEIAAAAATGGSVLNVAALLASGTQVTPQIA 62
           A  A ARR ++ ++ Q+Q++++  ++Q+QQ+            + +A  A   Q+ P + 
Sbjct: 95  AGAAAARRRQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS----SPSASTAQTAQLQPNLV 150

Query: 63  MAAQMAALQAKALAETGIAVPSYYNPAAVNP 93
            A+    L  +A  ++  A P    PA + P
Sbjct: 151 SASAAVLLTLQATVDSSQA-PGSVQPAPITP 180


>gi|78000156 eukaryotic translation initiation factor 2B, subunit 4
           delta isoform 3 [Homo sapiens]
          Length = 522

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 12/107 (11%)

Query: 6   ALARRLERAKKLQEQREKEMVEKQKQQEIAAAAATGGSVLNVAALLASGTQVTPQIAMAA 65
           A+ R + + +KLQ ++EK+  +K++++E  A   TG +V   AA     T+  P+  +  
Sbjct: 26  AVGREMTKEEKLQLRKEKKQQKKKRKEEKGAEPETGSAV--SAAQCQGPTRELPESGI-- 81

Query: 66  QMAALQAKALAETGIAVPSYYNPAAVNPMKFAEQEKKRKMLWQGKKE 112
           Q+   + K        VP+  + A +   + A+QE +R +    K E
Sbjct: 82  QLGTPREK--------VPAGRSKAELRAERRAKQEAERALKQARKGE 120


>gi|187607323 eukaryotic translation initiation factor 2B, subunit 4
           delta isoform 1 [Homo sapiens]
          Length = 543

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 12/107 (11%)

Query: 6   ALARRLERAKKLQEQREKEMVEKQKQQEIAAAAATGGSVLNVAALLASGTQVTPQIAMAA 65
           A+ R + + +KLQ ++EK+  +K++++E  A   TG +V   AA     T+  P+  +  
Sbjct: 47  AVGREMTKEEKLQLRKEKKQQKKKRKEEKGAEPETGSAV--SAAQCQGPTRELPESGI-- 102

Query: 66  QMAALQAKALAETGIAVPSYYNPAAVNPMKFAEQEKKRKMLWQGKKE 112
           Q+   + K        VP+  + A +   + A+QE +R +    K E
Sbjct: 103 QLGTPREK--------VPAGRSKAELRAERRAKQEAERALKQARKGE 141


>gi|94721334 hypothetical protein LOC54629 isoform a [Homo sapiens]
          Length = 621

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 11  LERAKKLQEQREKEMVEKQKQQEIAAAAATGGS 43
           LE AKKLQE+ ++   +  ++QE AAAAA   S
Sbjct: 543 LELAKKLQEEEDRRASQYYQEQEQAAAAAAAAS 575


>gi|94721338 hypothetical protein LOC54629 isoform b [Homo sapiens]
          Length = 620

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 11  LERAKKLQEQREKEMVEKQKQQEIAAAAATGGS 43
           LE AKKLQE+ ++   +  ++QE AAAAA   S
Sbjct: 543 LELAKKLQEEEDRRASQYYQEQEQAAAAAAAAS 575


>gi|7662302 TBK1 binding protein 1 [Homo sapiens]
          Length = 615

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 5   EALARRLE-RAKKLQEQREKEMVEKQKQQEIAAAAATGGSVLNVAALLASGTQVTPQIAM 63
           +A   RL+   K+LQE R +++   Q ++++A     G   +N+A    + T++T ++  
Sbjct: 251 QAECERLQGELKQLQETRAQDLASNQSERDMAWVKRVGDDQVNLA---LAYTELTEELGR 307

Query: 64  AAQMAALQAKAL 75
             ++++LQ + L
Sbjct: 308 LRELSSLQGRIL 319


>gi|56549694 enabled homolog isoform a [Homo sapiens]
          Length = 591

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 10  RLERAKK---LQEQREKEMVEKQKQQEIAAAAATGGSVLNVAALLASGTQVTPQIAMAAQ 66
           RLER ++    QEQ E+E +E ++++ I++AAA       + ++L   +   P +  A+Q
Sbjct: 237 RLERERQERERQEQLEREQLEWERERRISSAAAPASVETPLNSVLGDSSASEPGLQAASQ 296

Query: 67  MA 68
            A
Sbjct: 297 PA 298


>gi|39930375 enabled homolog isoform b [Homo sapiens]
          Length = 570

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 10  RLERAKK---LQEQREKEMVEKQKQQEIAAAAATGGSVLNVAALLASGTQVTPQIAMAAQ 66
           RLER ++    QEQ E+E +E ++++ I++AAA       + ++L   +   P +  A+Q
Sbjct: 237 RLERERQERERQEQLEREQLEWERERRISSAAAPASVETPLNSVLGDSSASEPGLQAASQ 296

Query: 67  MA 68
            A
Sbjct: 297 PA 298


>gi|27262628 nuclear autoantigenic sperm protein isoform 2 [Homo
           sapiens]
          Length = 788

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 122 WEKLNFGN---KDQNVKFRKLMGIKSEDEAGCSSVDEESYKTLKQQEEVFRNLDAQYEMA 178
           W+ L+      K Q  K  +L   ++  + G  SV+ E+Y    ++ +   NL  QY  A
Sbjct: 519 WDMLDLAKIIFKRQETKEAQLYAAQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYLEA 578

Query: 179 R----SQTHTQRGMGLGFTS 194
                ++TH Q G+  G+ S
Sbjct: 579 HDRLLAETHYQLGLAYGYNS 598


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.310    0.122    0.326 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,620,609
Number of Sequences: 37866
Number of extensions: 267872
Number of successful extensions: 2705
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 2343
Number of HSP's gapped (non-prelim): 419
length of query: 202
length of database: 18,247,518
effective HSP length: 97
effective length of query: 105
effective length of database: 14,574,516
effective search space: 1530324180
effective search space used: 1530324180
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.