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Search of human proteins with 37595565
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|37595565 T-cell receptor zeta chain isoform 1 precursor
[Homo sapiens]
(164 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|37595565 T-cell receptor zeta chain isoform 1 precursor [Homo... 333 3e-92
gi|4557431 T-cell receptor zeta chain isoform 2 precursor [Homo ... 327 3e-90
gi|4758344 Fc fragment of IgE, high affinity I, receptor for, ga... 54 5e-08
gi|145312241 differentially expressed in FDCP 6 homolog [Homo sa... 31 0.55
gi|76881819 sterile alpha motif domain containing 11 [Homo sapiens] 31 0.55
gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens] 30 0.72
gi|119120903 par-3 partitioning defective 3 homolog B isoform c ... 30 0.94
gi|119120897 par-3 partitioning defective 3 homolog B isoform b ... 30 0.94
gi|91208430 CD86 antigen isoform 1 [Homo sapiens] 28 2.7
gi|213972593 TPTE and PTEN homologous inositol lipid phosphatase... 28 3.6
gi|213972591 TPTE and PTEN homologous inositol lipid phosphatase... 28 3.6
gi|213972589 TPTE and PTEN homologous inositol lipid phosphatase... 28 3.6
gi|195963418 tubulin tyrosine ligase-like family, member 6 isofo... 28 3.6
gi|195963416 tubulin tyrosine ligase-like family, member 6 isofo... 28 3.6
gi|13540523 nucleosomal binding protein 1 [Homo sapiens] 28 4.6
gi|34878777 ring finger protein 20 [Homo sapiens] 28 4.6
gi|40549435 transmembrane phosphatase with tensin homology isofo... 28 4.6
gi|40549433 transmembrane phosphatase with tensin homology isofo... 28 4.6
gi|109689707 transmembrane phosphatase with tensin homology isof... 28 4.6
gi|8923516 ankyrin repeat and SOCS box-containing 6 isoform 1 [H... 28 4.6
gi|30089932 ankyrin repeat and SOCS box-containing 6 isoform 2 [... 28 4.6
gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens] 28 4.6
gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo sapi... 28 4.6
gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens] 27 6.1
gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo... 27 6.1
gi|239745400 PREDICTED: transmembrane protein 114 [Homo sapiens] 27 6.1
gi|226437592 transmembrane protein 114 [Homo sapiens] 27 6.1
gi|195976782 Paf1/RNA polymerase II complex component [Homo sapi... 27 6.1
gi|11119430 testis-specific kinase substrate [Homo sapiens] 27 7.9
gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B ... 27 7.9
>gi|37595565 T-cell receptor zeta chain isoform 1 precursor [Homo
sapiens]
Length = 164
Score = 333 bits (855), Expect = 3e-92
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 1 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRSAD 60
MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRSAD
Sbjct: 1 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRSAD 60
Query: 61 APAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNELQKDKMA 120
APAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNELQKDKMA
Sbjct: 61 APAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNELQKDKMA 120
Query: 121 EAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR 164
EAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR
Sbjct: 121 EAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR 164
>gi|4557431 T-cell receptor zeta chain isoform 2 precursor [Homo
sapiens]
Length = 163
Score = 327 bits (838), Expect = 3e-90
Identities = 163/164 (99%), Positives = 163/164 (99%), Gaps = 1/164 (0%)
Query: 1 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRSAD 60
MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRSAD
Sbjct: 1 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRSAD 60
Query: 61 APAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNELQKDKMA 120
APAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKP RRKNPQEGLYNELQKDKMA
Sbjct: 61 APAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKP-RRKNPQEGLYNELQKDKMA 119
Query: 121 EAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR 164
EAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR
Sbjct: 120 EAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR 163
>gi|4758344 Fc fragment of IgE, high affinity I, receptor for,
gamma polypeptide precursor [Homo sapiens]
Length = 86
Score = 54.3 bits (129), Expect = 5e-08
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 6 LFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFS-RSADAPAY 64
+ A +L L + +A + G +P+LCY+LD ILF+YG++LT L+ R+K R A +Y
Sbjct: 1 MIPAVVLLLLLLVEQAAALG--EPQLCYILDAILFLYGIVLTLLYCRLKIQVRKAAITSY 58
Query: 65 QQGQNQLYNELNLGRREEYDVL 86
++ +Y L+ +E Y+ L
Sbjct: 59 EKSDG-VYTGLSTRNQETYETL 79
Score = 27.7 bits (60), Expect = 4.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 139 DGLYQGLSTATKDTYDALHMQALP 162
DG+Y GLST ++TY+ L + P
Sbjct: 62 DGVYTGLSTRNQETYETLKHEKPP 85
>gi|145312241 differentially expressed in FDCP 6 homolog [Homo
sapiens]
Length = 631
Score = 30.8 bits (68), Expect = 0.55
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 66 QGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNELQKDKMAEAYSE 125
+G+ L+ +L RRE+ + ++RR E + Q+ + +E EL+ + A+ +E
Sbjct: 316 EGKTSLHKDLKQKRREQREQRERRRAAKEEELLRLQQLQEEKERKLQELELLQEAQRQAE 375
Query: 126 -IGMKGERRRGKGHDGLYQGLSTATKDTYDA 155
+ + E RR H L Q L ++ A
Sbjct: 376 RLLQEEEERRRSQHRELQQALEGQLREAEQA 406
>gi|76881819 sterile alpha motif domain containing 11 [Homo sapiens]
Length = 681
Score = 30.8 bits (68), Expect = 0.55
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 46 LTALFLRVKFSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGG-----KP 100
L L V SR P +Q L +G R D+L KR GR P + K
Sbjct: 107 LPTLISSVHRSRHLVMPEHQSRCEFQRGSLEIGLRPAGDLLGKRLGRSPRISSDCFSEKR 166
Query: 101 QRRKNPQEGL 110
R ++PQE L
Sbjct: 167 ARSESPQEAL 176
>gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens]
Length = 1388
Score = 30.4 bits (67), Expect = 0.72
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 2/103 (1%)
Query: 14 AQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRSADAPAYQQGQNQLYN 73
A+ P E SFG+L P LCYLL+ G + + + +
Sbjct: 1131 AKPPPKEVPSFGMLTPALCYLLEEQEAARGSCSVEEEMEIDEEKQMKGFLDDSERMAFLV 1190
Query: 74 ELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNELQK 116
L+LG E + +L G K R++ +G+Y+ L +
Sbjct: 1191 SLHLGAAERWFILQMEVGEPLSHENKSFLRRS--QGIYDSLSE 1231
>gi|119120903 par-3 partitioning defective 3 homolog B isoform c
[Homo sapiens]
Length = 1136
Score = 30.0 bits (66), Expect = 0.94
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 95 EMGGKPQRRKNPQEGLYNELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYD 154
+ GGK +++ + G E + +KM E IG K + R K GL + A YD
Sbjct: 815 DKGGKAEQKGTLKHGGLREEELEKMKEERERIGAKHQELREKQARGLLDYATGAIGSVYD 874
>gi|119120897 par-3 partitioning defective 3 homolog B isoform b
[Homo sapiens]
Length = 1143
Score = 30.0 bits (66), Expect = 0.94
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 95 EMGGKPQRRKNPQEGLYNELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYD 154
+ GGK +++ + G E + +KM E IG K + R K GL + A YD
Sbjct: 822 DKGGKAEQKGTLKHGGLREEELEKMKEERERIGAKHQELREKQARGLLDYATGAIGSVYD 881
>gi|91208430 CD86 antigen isoform 1 [Homo sapiens]
Length = 329
Score = 28.5 bits (62), Expect = 2.7
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 19/85 (22%)
Query: 27 LDPKLCYLLDGILFIYGVILTA---LFLRVKFSRSADAPA----------------YQQG 67
+DP+ L ILF+ +L+ L ++ F+ +AD P +Q
Sbjct: 1 MDPQCTMGLSNILFVMAFLLSGAAPLKIQAYFNETADLPCQFANSQNQSLSELVVFWQDQ 60
Query: 68 QNQLYNELNLGRREEYDVLDKRRGR 92
+N + NE+ LG+ + V K GR
Sbjct: 61 ENLVLNEVYLGKEKFDSVHSKYMGR 85
>gi|213972593 TPTE and PTEN homologous inositol lipid phosphatase
isoform delta [Homo sapiens]
Length = 411
Score = 28.1 bits (61), Expect = 3.6
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 130 GERRRGKGHDGLYQGLSTATKDTYDALHMQA-------LPPR 164
GERR K H +QG+ T +++ Y Q LPPR
Sbjct: 241 GERRTNKTHSNKFQGVETPSQNRYVGYFAQVKHLYNWNLPPR 282
>gi|213972591 TPTE and PTEN homologous inositol lipid phosphatase
isoform gamma [Homo sapiens]
Length = 522
Score = 28.1 bits (61), Expect = 3.6
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 130 GERRRGKGHDGLYQGLSTATKDTYDALHMQA-------LPPR 164
GERR K H +QG+ T +++ Y Q LPPR
Sbjct: 352 GERRTNKTHSNKFQGVETPSQNRYVGYFAQVKHLYNWNLPPR 393
>gi|213972589 TPTE and PTEN homologous inositol lipid phosphatase
isoform alpha [Homo sapiens]
Length = 445
Score = 28.1 bits (61), Expect = 3.6
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 130 GERRRGKGHDGLYQGLSTATKDTYDALHMQA-------LPPR 164
GERR K H +QG+ T +++ Y Q LPPR
Sbjct: 275 GERRTNKTHSNKFQGVETPSQNRYVGYFAQVKHLYNWNLPPR 316
>gi|195963418 tubulin tyrosine ligase-like family, member 6 isoform
1 [Homo sapiens]
Length = 891
Score = 28.1 bits (61), Expect = 3.6
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 55 FSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNEL 114
F + + A ++ QL EL L R ++ + K+ E G+ R+K + +
Sbjct: 516 FQNTVASRAREEYARQLIQELRLKREKKPFQMKKKVEMQGESAGEQVRKKGMRGWQQKQQ 575
Query: 115 QKDKMAEAYSE 125
QKDK A S+
Sbjct: 576 QKDKAATQASK 586
>gi|195963416 tubulin tyrosine ligase-like family, member 6 isoform
2 [Homo sapiens]
Length = 584
Score = 28.1 bits (61), Expect = 3.6
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 55 FSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNEL 114
F + + A ++ QL EL L R ++ + K+ E G+ R+K + +
Sbjct: 209 FQNTVASRAREEYARQLIQELRLKREKKPFQMKKKVEMQGESAGEQVRKKGMRGWQQKQQ 268
Query: 115 QKDKMAEAYSE 125
QKDK A S+
Sbjct: 269 QKDKAATQASK 279
>gi|13540523 nucleosomal binding protein 1 [Homo sapiens]
Length = 282
Score = 27.7 bits (60), Expect = 4.6
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 79 RREEYDVLDKRRGRDPEMG--GKPQR-RKNPQEGLYNELQKDKMAEAYS-EIGMKGERRR 134
+ EE D + ++ E G GK + K ++G ++ +K +A E G KGE +
Sbjct: 124 KNEEEDQKEDEEDQNEEKGEAGKEDKDEKGEEDGKEDKNGNEKGEDAKEKEDGKKGEDGK 183
Query: 135 GKGHDGLYQG 144
G G DG +G
Sbjct: 184 GNGEDGKEKG 193
>gi|34878777 ring finger protein 20 [Homo sapiens]
Length = 975
Score = 27.7 bits (60), Expect = 4.6
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 56 SRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNELQ 115
S+S+ + A Q+ N++ ++ + RE R R+ E + +R K + E +
Sbjct: 545 SQSSASKASQEDANEIKSKRDEEERE-------RERREKEREREREREKEKER----ERE 593
Query: 116 KDKMAEAYSEIGMKGERRRGKGHDG 140
K K+ E+ E ++ +GK DG
Sbjct: 594 KQKLKESEKERDSAKDKEKGKHDDG 618
>gi|40549435 transmembrane phosphatase with tensin homology isoform
gamma [Homo sapiens]
Length = 513
Score = 27.7 bits (60), Expect = 4.6
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 130 GERRRGKGHDGLYQGLSTATKDTYDALHMQA-------LPPR 164
GERR K H +QG+ T ++ Y A Q LPPR
Sbjct: 332 GERRTDKTHSEKFQGVETPSQKRYVAYFAQVKHLYNWNLPPR 373
>gi|40549433 transmembrane phosphatase with tensin homology isoform
beta [Homo sapiens]
Length = 533
Score = 27.7 bits (60), Expect = 4.6
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 130 GERRRGKGHDGLYQGLSTATKDTYDALHMQA-------LPPR 164
GERR K H +QG+ T ++ Y A Q LPPR
Sbjct: 352 GERRTDKTHSEKFQGVETPSQKRYVAYFAQVKHLYNWNLPPR 393
>gi|109689707 transmembrane phosphatase with tensin homology isoform
alpha [Homo sapiens]
Length = 551
Score = 27.7 bits (60), Expect = 4.6
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 130 GERRRGKGHDGLYQGLSTATKDTYDALHMQA-------LPPR 164
GERR K H +QG+ T ++ Y A Q LPPR
Sbjct: 370 GERRTDKTHSEKFQGVETPSQKRYVAYFAQVKHLYNWNLPPR 411
>gi|8923516 ankyrin repeat and SOCS box-containing 6 isoform 1
[Homo sapiens]
Length = 421
Score = 27.7 bits (60), Expect = 4.6
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 23 SFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRSADAPAYQQG-QNQLYNELNLGRRE 81
S G+ DP+ LD ++ L L R A +P YQ+G N L LG
Sbjct: 24 SLGIQDPERQESLDRPSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTR 83
Query: 82 EYDVL 86
DVL
Sbjct: 84 AADVL 88
>gi|30089932 ankyrin repeat and SOCS box-containing 6 isoform 2
[Homo sapiens]
Length = 197
Score = 27.7 bits (60), Expect = 4.6
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 23 SFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRSADAPAYQQG-QNQLYNELNLGRRE 81
S G+ DP+ LD ++ L L R A +P YQ+G N L LG
Sbjct: 24 SLGIQDPERQESLDRPSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTR 83
Query: 82 EYDVL 86
DVL
Sbjct: 84 AADVL 88
>gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens]
Length = 1484
Score = 27.7 bits (60), Expect = 4.6
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 69 NQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQ--RRKNPQEG 109
++L+ + L D GR PE G +PQ RR++PQEG
Sbjct: 664 SRLFGQEELDPDSLSDASGSDGGRGPEPGVEPQDSRRRSPQEG 706
>gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo
sapiens]
Length = 1554
Score = 27.7 bits (60), Expect = 4.6
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 69 NQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQ--RRKNPQEG 109
++L+ + L D GR PE G +PQ RR++PQEG
Sbjct: 734 SRLFGQEELDPDSLSDASGSDGGRGPEPGVEPQDSRRRSPQEG 776
>gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens]
Length = 223
Score = 27.3 bits (59), Expect = 6.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 26 LLDPKLCYLLDGILFIYGVILTALFLRVKFSRSADA 61
LL L LL GILF++G ++T + V + SA A
Sbjct: 129 LLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAA 164
>gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo
sapiens]
Length = 217
Score = 27.3 bits (59), Expect = 6.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 26 LLDPKLCYLLDGILFIYGVILTALFLRVKFSRSADA 61
LL L LL GILF++G ++T + V + SA A
Sbjct: 123 LLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAA 158
>gi|239745400 PREDICTED: transmembrane protein 114 [Homo sapiens]
Length = 122
Score = 27.3 bits (59), Expect = 6.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 26 LLDPKLCYLLDGILFIYGVILTALFLRVKFSRSADA 61
LL L LL GILF++G ++T + V + SA A
Sbjct: 28 LLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAA 63
>gi|226437592 transmembrane protein 114 [Homo sapiens]
Length = 223
Score = 27.3 bits (59), Expect = 6.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 26 LLDPKLCYLLDGILFIYGVILTALFLRVKFSRSADA 61
LL L LL GILF++G ++T + V + SA A
Sbjct: 129 LLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAA 164
>gi|195976782 Paf1/RNA polymerase II complex component [Homo
sapiens]
Length = 710
Score = 27.3 bits (59), Expect = 6.1
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 65 QQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNELQKDKMAEAYS 124
Q+ Q +N+ +R+E LDK+ E+ + ++RKN L + Q K +E YS
Sbjct: 256 QESQVTSHNKERRSKRDEK--LDKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSEVYS 313
Query: 125 E 125
+
Sbjct: 314 D 314
>gi|11119430 testis-specific kinase substrate [Homo sapiens]
Length = 592
Score = 26.9 bits (58), Expect = 7.9
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 68 QNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGL 110
Q QL +E RR+E ++ + ++PE +P+ ++ P+ GL
Sbjct: 228 QQQLQDETP--RRQEAELQEPEEKQEPEEKQEPEEKQKPEAGL 268
>gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B
subunit [Homo sapiens]
Length = 2339
Score = 26.9 bits (58), Expect = 7.9
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 87 DKRRGRDPEMGGKPQRRKNPQEGLYNELQKDKMAEAYSE-----IGMKGERR 133
++ RG PE G + RR +P+E E ++ + A + + G KGERR
Sbjct: 905 ERGRGPGPEGGRRHHRRGSPEEAAEREPRRHR-AHRHQDPSKECAGAKGERR 955
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.138 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,148,848
Number of Sequences: 37866
Number of extensions: 258175
Number of successful extensions: 765
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 748
Number of HSP's gapped (non-prelim): 33
length of query: 164
length of database: 18,247,518
effective HSP length: 94
effective length of query: 70
effective length of database: 14,688,114
effective search space: 1028167980
effective search space used: 1028167980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.