Guide to the Human Genome
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Name: CD247 Sequence: fasta or formatted (164aa) NCBI GI: 37595565
Description:

T-cell receptor zeta chain isoform 1 precursor

Referenced in:

Fc Receptors
Protein Tyrosine Phosphatases
T cells

Other entries for this name:
alt prot [163aa] T-cell receptor zeta chain isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         14           2
 C cysteine            0.6          1           1
 D aspartate           6.1         10           1
 E glutamate           6.1         10           2
 F phenylalanine       3.0          5           1
 G glycine             9.1         15           2
 H histidine           1.2          2           1
 I isoleucine          3.7          6           1
 K lysine              7.3         12           1
 L leucine            13.4         22           2
 M methionine          3.0          5           1
 N asparagine          3.0          5           1
 P proline             4.9          8           2
 Q glutamine           7.3         12           2
 R arginine            7.9         13           3
 S serine              3.0          5           1
 T threonine           3.7          6           1
 V valine              1.8          3           1
 W tryptophan          0.6          1           1
 Y tyrosine            5.5          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   T-cell receptor zeta chain isoform 1 precursor [Homo... 
CD247                 0.981   T-cell receptor zeta chain isoform 2 precursor 
FCER1G                0.094   Fc fragment of IgE, high affinity I, receptor for, ga...
DEF6                  0.019   differentially expressed in FDCP 6 homolog 
SAMD11                0.019   sterile alpha motif domain containing 11 
RGAG1                 0.016   retrotransposon gag domain containing 1 
PARD3B                0.016   par-3 partitioning defective 3 homolog B isoform c ...
PARD3B                0.016   par-3 partitioning defective 3 homolog B isoform b ...
CD86                  0.010   CD86 antigen isoform 1 
TPTE2                 0.010   TPTE and PTEN homologous inositol lipid phosphatase...
TPTE2                 0.010   TPTE and PTEN homologous inositol lipid phosphatase...
TPTE2                 0.010   TPTE and PTEN homologous inositol lipid phosphatase...
TTLL6                 0.010   tubulin tyrosine ligase-like family, member 6 isofo...
TTLL6                 0.010   tubulin tyrosine ligase-like family, member 6 isofo...
NSBP1                 0.010   nucleosomal binding protein 1 
RNF20                 0.010   ring finger protein 20 
TPTE                  0.010   transmembrane phosphatase with tensin homology isofo...
TPTE                  0.010   transmembrane phosphatase with tensin homology isofo...
TPTE                  0.010   transmembrane phosphatase with tensin homology isof...
ASB6                  0.010   ankyrin repeat and SOCS box-containing 6 isoform 1 [H...
ASB6                  0.010   ankyrin repeat and SOCS box-containing 6 isoform 2 [...
KIAA0284              0.010   hypothetical protein LOC283638 isoform 2 
KIAA0284              0.010   hypothetical protein LOC283638 isoform 1 
TMEM114               0.006   PREDICTED: transmembrane protein 114 
TMEM114               0.006   PREDICTED: transmembrane protein 114, partial [Homo...
TMEM114               0.006   PREDICTED: transmembrane protein 114 
TMEM114               0.006   transmembrane protein 114 
RTF1                  0.006   Paf1/RNA polymerase II complex component 
TSKS                  0.006   testis-specific kinase substrate 
CACNA1B               0.006   calcium channel, voltage-dependent, N type, alpha 1B ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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