BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|37594469 3-hydroxyisobutyryl-Coenzyme A hydrolase isoform 2 [Homo sapiens] (338 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|37594469 3-hydroxyisobutyryl-Coenzyme A hydrolase isoform 2 [... 672 0.0 gi|37594471 3-hydroxyisobutyryl-Coenzyme A hydrolase isoform 1 [... 670 0.0 gi|194097323 mitochondrial short-chain enoyl-coenzyme A hydratas... 96 5e-20 gi|4502327 AU RNA binding protein/enoyl-Coenzyme A hydratase pre... 71 2e-12 gi|68989263 enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A... 70 3e-12 gi|70995211 peroxisomal enoyl-coenzyme A hydratase-like protein ... 67 2e-11 gi|20127408 mitochondrial trifunctional protein, alpha subunit p... 64 2e-10 gi|31542718 enoyl Coenzyme A hydratase domain containing 3 [Homo... 55 9e-08 gi|157694516 enoyl Coenzyme A hydratase domain containing 1 isof... 53 4e-07 gi|213417737 enoyl Coenzyme A hydratase domain containing 1 isof... 53 4e-07 gi|4757966 Y chromosome chromodomain protein 1, telomeric isofor... 49 8e-06 gi|25453481 Y chromosome chromodomain protein 1, telomeric isofo... 49 8e-06 gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo s... 49 8e-06 gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo s... 49 8e-06 gi|150378541 enoyl Coenzyme A hydratase domain containing 2 [Hom... 47 2e-05 gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens] 45 7e-05 gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens] 45 7e-05 gi|45643119 peroxisomal D3,D2-enoyl-CoA isomerase isoform 1 [Hom... 41 0.001 gi|221307494 chromodomain protein, Y chromosome-like isoform a [... 40 0.003 gi|221136756 chromodomain protein, Y chromosome-like isoform d [... 40 0.003 gi|221136753 chromodomain protein, Y chromosome-like isoform d [... 40 0.003 gi|157694520 enoyl Coenzyme A hydratase domain containing 1 isof... 39 0.007 gi|117414154 sodium channel associated protein 2 isoform b [Homo... 36 0.043 gi|117414162 sodium channel associated protein 2 isoform a [Homo... 36 0.043 gi|29294627 PTPRF interacting protein binding protein 1 isoform ... 36 0.056 gi|111955063 GTP-binding protein 10 isoform 1 [Homo sapiens] 32 0.81 gi|50593027 enoyl Coenzyme A hydratase domain containing 1 isofo... 31 1.4 gi|34878904 synaptonemal complex protein 1 [Homo sapiens] 31 1.8 gi|19923599 calmin [Homo sapiens] 30 3.1 gi|66363686 NEDD8 activating enzyme E1 subunit 1 isoform b [Homo... 30 4.0 >gi|37594469 3-hydroxyisobutyryl-Coenzyme A hydrolase isoform 2 [Homo sapiens] Length = 338 Score = 672 bits (1734), Expect = 0.0 Identities = 338/338 (100%), Positives = 338/338 (100%) Query: 1 MGQREMWRLMSRFNAFKRTNTILHHLRMSKHTDAAEEVLLEKKGCTGVITLNRPKFLNAL 60 MGQREMWRLMSRFNAFKRTNTILHHLRMSKHTDAAEEVLLEKKGCTGVITLNRPKFLNAL Sbjct: 1 MGQREMWRLMSRFNAFKRTNTILHHLRMSKHTDAAEEVLLEKKGCTGVITLNRPKFLNAL 60 Query: 61 TLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFRE 120 TLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFRE Sbjct: 61 TLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFRE 120 Query: 121 EYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGG 180 EYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGG Sbjct: 121 EYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGG 180 Query: 181 GYFLPRLQGKLGYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENI 240 GYFLPRLQGKLGYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENI Sbjct: 181 GYFLPRLQGKLGYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENI 240 Query: 241 ASVLENYHTESKIDRDKSFILEEHMDKINSCFSANTVEEIIENLQQDGSSFALEQLKVIN 300 ASVLENYHTESKIDRDKSFILEEHMDKINSCFSANTVEEIIENLQQDGSSFALEQLKVIN Sbjct: 241 ASVLENYHTESKIDRDKSFILEEHMDKINSCFSANTVEEIIENLQQDGSSFALEQLKVIN 300 Query: 301 KMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMF 338 KMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMF Sbjct: 301 KMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMF 338 >gi|37594471 3-hydroxyisobutyryl-Coenzyme A hydrolase isoform 1 [Homo sapiens] Length = 386 Score = 670 bits (1728), Expect = 0.0 Identities = 337/337 (100%), Positives = 337/337 (100%) Query: 1 MGQREMWRLMSRFNAFKRTNTILHHLRMSKHTDAAEEVLLEKKGCTGVITLNRPKFLNAL 60 MGQREMWRLMSRFNAFKRTNTILHHLRMSKHTDAAEEVLLEKKGCTGVITLNRPKFLNAL Sbjct: 1 MGQREMWRLMSRFNAFKRTNTILHHLRMSKHTDAAEEVLLEKKGCTGVITLNRPKFLNAL 60 Query: 61 TLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFRE 120 TLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFRE Sbjct: 61 TLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFRE 120 Query: 121 EYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGG 180 EYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGG Sbjct: 121 EYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGG 180 Query: 181 GYFLPRLQGKLGYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENI 240 GYFLPRLQGKLGYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENI Sbjct: 181 GYFLPRLQGKLGYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENI 240 Query: 241 ASVLENYHTESKIDRDKSFILEEHMDKINSCFSANTVEEIIENLQQDGSSFALEQLKVIN 300 ASVLENYHTESKIDRDKSFILEEHMDKINSCFSANTVEEIIENLQQDGSSFALEQLKVIN Sbjct: 241 ASVLENYHTESKIDRDKSFILEEHMDKINSCFSANTVEEIIENLQQDGSSFALEQLKVIN 300 Query: 301 KMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACM 337 KMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACM Sbjct: 301 KMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACM 337 >gi|194097323 mitochondrial short-chain enoyl-coenzyme A hydratase 1 precursor [Homo sapiens] Length = 290 Score = 95.9 bits (237), Expect = 5e-20 Identities = 76/236 (32%), Positives = 117/236 (49%), Gaps = 25/236 (10%) Query: 36 EEVLLEKKG---CTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGK 92 E ++ EK+G G+I LNRPK LNAL +I ++ LK +E+DP I++ G G K Sbjct: 34 EYIIAEKRGKNNTVGLIQLNRPKALNALCDGLIDELNQALKTFEEDPAVGAIVLTG-GDK 92 Query: 93 AFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSV 152 AF AG DI+ + + + F + L +KP +A ++G GGG L++ Sbjct: 93 AFAAGADIKEMQNLS-FQDCYSSKFLKHWDHLTQV----KKPVIAAVNGYAFGGGCELAM 147 Query: 153 HGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGK-LGYFLALTGFRLKGRDVYRAG 211 A EK FA PE IG P GG L R GK L + LTG R+ +D +AG Sbjct: 148 MCDIIYAGEKAQFAQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAG 207 Query: 212 IATHFVD-----------SEKLAMLEEDLLALKSPSKENIASVLENYHTE-SKIDR 255 + + +EK+A + ++A+ +KE++ + E TE SK+++ Sbjct: 208 LVSKICPVETLVEEAIQCAEKIASNSKIVVAM---AKESVNAAFEMTLTEGSKLEK 260 >gi|4502327 AU RNA binding protein/enoyl-Coenzyme A hydratase precursor [Homo sapiens] Length = 339 Score = 70.9 bits (172), Expect = 2e-12 Identities = 45/175 (25%), Positives = 85/175 (48%), Gaps = 4/175 (2%) Query: 48 VITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAE 107 V+ +NR N+L+ N+I+ + + + D + III+ FCAG D++ A+ Sbjct: 91 VLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLK--ERAK 148 Query: 108 KAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAM 167 + ++ P + ++N+ + + P +A I G+ +GGG+ L++ RVA + Sbjct: 149 MSSSEVGPFVSKIRAVIND-IANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGL 207 Query: 168 PETAIGLFPDVGGGYFLPRLQG-KLGYFLALTGFRLKGRDVYRAGIATHFVDSEK 221 ET + + P GG LPR G L L + L G++ G+ +H ++ + Sbjct: 208 VETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQ 262 >gi|68989263 enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase [Homo sapiens] Length = 723 Score = 69.7 bits (169), Expect = 3e-12 Identities = 56/174 (32%), Positives = 82/174 (47%), Gaps = 11/174 (6%) Query: 48 VITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAE 107 +I L P +NA++ ++R I L+K D I+I GA GK F AG DIR S Sbjct: 13 LIRLRNPP-VNAISTTLLRDIKEGLQKAVIDHTIKAIVICGAEGK-FSAGADIRGFSAPR 70 Query: 108 KAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAM 167 + V +E N +KP VA I G+ GGG+ L++ +R+A + + Sbjct: 71 TFGLTLGHVV--DEIQRN------EKPVVAAIQGMAFGGGLELALGCHYRIAHAEAQVGL 122 Query: 168 PETAIGLFPDVGGGYFLPRLQG-KLGYFLALTGFRLKGRDVYRAGIATHFVDSE 220 PE +GL P G LPRL G L +G R+ + + GI V+S+ Sbjct: 123 PEVTLGLLPGARGTQLLPRLTGVPAALDLITSGRRILADEALKLGILDKVVNSD 176 >gi|70995211 peroxisomal enoyl-coenzyme A hydratase-like protein [Homo sapiens] Length = 328 Score = 67.4 bits (163), Expect = 2e-11 Identities = 62/260 (23%), Positives = 110/260 (42%), Gaps = 19/260 (7%) Query: 49 ITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVIS---- 104 + LNRP NA+ R++ K +D + ++I GAG K F AG D+ ++ Sbjct: 70 VQLNRPNKRNAMNKVFWREMVECFNKISRDADCRAVVISGAG-KMFTAGIDLMDMASDIL 128 Query: 105 -----EAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVA 159 + + + + R + N + C KP +A +HG +GGGV L R Sbjct: 129 QPKGDDVARISWYLRDIITRYQETFN-VIERCPKPVIAAVHGGCIGGGVDLVTACDIRYC 187 Query: 160 TEKCLFAMPETAIGLFPDVGGGYFLPRLQG--KLGYFLALTGFRLKGRDVYRAGIATHFV 217 + F + E +GL DVG LP++ G L LA T ++ + +G+ + V Sbjct: 188 AQDAFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAFTARKMMADEALGSGLVSR-V 246 Query: 218 DSEKLAMLEEDL-----LALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCF 272 +K ML+ L ++ KSP V Y + + +++ +M + + Sbjct: 247 FPDKEVMLDAALALAAEISSKSPVAVQSTKVNLLYSRDHSVAESLNYVASWNMSMLQTQD 306 Query: 273 SANTVEEIIENLQQDGSSFA 292 +V+ EN + +F+ Sbjct: 307 LVKSVQATTENKELKTVTFS 326 >gi|20127408 mitochondrial trifunctional protein, alpha subunit precursor [Homo sapiens] Length = 763 Score = 63.9 bits (154), Expect = 2e-10 Identities = 55/218 (25%), Positives = 100/218 (45%), Gaps = 11/218 (5%) Query: 9 LMSRFNAFKRTNT---ILHHLRMSKHTDAAEEVLLEKKGCTGVITLNRPKF-LNALTLNM 64 ++SRF+AF+ + I + S + KG V+ +N P +N L+ + Sbjct: 9 ILSRFSAFRILRSRGYICRNFTGSSALLTRTHINYGVKGDVAVVRINSPNSKVNTLSKEL 68 Query: 65 IRQIYPQLKK-WEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYM 123 + + + W D ++I G F AG DI +++ A K Q++ + +E Sbjct: 69 HSEFSEVMNEIWASDQIRSAVLISSKPG-CFIAGADINMLA-ACKTLQEVTQLS-QEAQR 125 Query: 124 LNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATE--KCLFAMPETAIGLFPDVGGG 181 + + KP VA I+G +GGG+ +++ Q+R+AT+ K + PE +G P GG Sbjct: 126 IVEKLEKSTKPIVAAINGSCLGGGLEVAISCQYRIATKDRKTVLGTPEVLLGALPGAGGT 185 Query: 182 YFLPRLQG-KLGYFLALTGFRLKGRDVYRAGIATHFVD 218 LP++ G + LTG ++ + G+ V+ Sbjct: 186 QRLPKMVGVPAALDMMLTGRSIRADRAKKMGLVDQLVE 223 >gi|31542718 enoyl Coenzyme A hydratase domain containing 3 [Homo sapiens] Length = 303 Score = 55.1 bits (131), Expect = 9e-08 Identities = 42/174 (24%), Positives = 79/174 (45%), Gaps = 3/174 (1%) Query: 49 ITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEK 108 I L+ PK N L+L M++ + + + D +II A G F +G D++ ++E E+ Sbjct: 59 IVLSNPKKRNTLSLAMLKSLQSDILH-DADSNDLKVIIISAEGPVFSSGHDLKELTE-EQ 116 Query: 109 AKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMP 168 + A VF ++ + + + P +A+++G+ G L VA++K FA P Sbjct: 117 GRDYHAEVFQTCSKVMMH-IRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATP 175 Query: 169 ETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYRAGIATHFVDSEKL 222 +GLF G + K+ + TG + ++ G+ + V +L Sbjct: 176 GVNVGLFCSTPGVALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAEL 229 >gi|157694516 enoyl Coenzyme A hydratase domain containing 1 isoform 1 [Homo sapiens] Length = 301 Score = 52.8 bits (125), Expect = 4e-07 Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 9/185 (4%) Query: 47 GVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEA 106 G++TLN P +NA + M+ Q+ ++ + E E +I++GA F +G D+ + Sbjct: 59 GILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKN-TFSSGSDLNAVKSL 117 Query: 107 EKAKQKIAPVFFREEYMLNNAVGSCQKPY--VALIHGITMGGGVGLSVHGQFRVATEKCL 164 + +A F M N + P VAL+ G +GGG + FR+ T + Sbjct: 118 GTPEDGMAVCMF----MQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESK 173 Query: 165 FAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTG-FRLKGRDVYRAGIATHFV-DSEKL 222 +G+ P GG L + G L+G +L ++ G+ + S++ Sbjct: 174 IRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVLQSSDET 233 Query: 223 AMLEE 227 LEE Sbjct: 234 KSLEE 238 >gi|213417737 enoyl Coenzyme A hydratase domain containing 1 isoform 5 [Homo sapiens] Length = 307 Score = 52.8 bits (125), Expect = 4e-07 Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 9/185 (4%) Query: 47 GVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEA 106 G++TLN P +NA + M+ Q+ ++ + E E +I++GA F +G D+ + Sbjct: 65 GILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKN-TFSSGSDLNAVKSL 123 Query: 107 EKAKQKIAPVFFREEYMLNNAVGSCQKPY--VALIHGITMGGGVGLSVHGQFRVATEKCL 164 + +A F M N + P VAL+ G +GGG + FR+ T + Sbjct: 124 GTPEDGMAVCMF----MQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESK 179 Query: 165 FAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTG-FRLKGRDVYRAGIATHFV-DSEKL 222 +G+ P GG L + G L+G +L ++ G+ + S++ Sbjct: 180 IRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVLQSSDET 239 Query: 223 AMLEE 227 LEE Sbjct: 240 KSLEE 244 >gi|4757966 Y chromosome chromodomain protein 1, telomeric isoform b [Homo sapiens] Length = 554 Score = 48.5 bits (114), Expect = 8e-06 Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 5/192 (2%) Query: 26 LRMSKHTDAAEEVLLEKK-GCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLI 84 +R+++ +++++K+ G T ++ R NAL +I++I L D + Sbjct: 274 IRLTESASTYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDSK--L 331 Query: 85 IIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYM-LNNAVGSCQKPYVALIHGIT 143 ++ A G FC G D + + + A + + N +KP V ++G Sbjct: 332 VLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPA 391 Query: 144 MGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKL-GYFLALTGFRL 202 +G G + A EK F P T G PD P++ GK + + G +L Sbjct: 392 IGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKL 451 Query: 203 KGRDVYRAGIAT 214 R+ G+ + Sbjct: 452 TAREACAKGLVS 463 >gi|25453481 Y chromosome chromodomain protein 1, telomeric isoform a [Homo sapiens] Length = 540 Score = 48.5 bits (114), Expect = 8e-06 Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 5/192 (2%) Query: 26 LRMSKHTDAAEEVLLEKK-GCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLI 84 +R+++ +++++K+ G T ++ R NAL +I++I L D + Sbjct: 274 IRLTESASTYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDSK--L 331 Query: 85 IIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYM-LNNAVGSCQKPYVALIHGIT 143 ++ A G FC G D + + + A + + N +KP V ++G Sbjct: 332 VLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPA 391 Query: 144 MGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKL-GYFLALTGFRL 202 +G G + A EK F P T G PD P++ GK + + G +L Sbjct: 392 IGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKL 451 Query: 203 KGRDVYRAGIAT 214 R+ G+ + Sbjct: 452 TAREACAKGLVS 463 >gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo sapiens] Length = 554 Score = 48.5 bits (114), Expect = 8e-06 Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 5/192 (2%) Query: 26 LRMSKHTDAAEEVLLEKK-GCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLI 84 +R+++ +++++K+ G T ++ R NAL +I++I L D + Sbjct: 274 IRLTESASTYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDSK--L 331 Query: 85 IIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYM-LNNAVGSCQKPYVALIHGIT 143 ++ A G FC G D + + + A + + N +KP V ++G Sbjct: 332 VLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPA 391 Query: 144 MGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKL-GYFLALTGFRL 202 +G G + A EK F P T G PD P++ GK + + G +L Sbjct: 392 IGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKL 451 Query: 203 KGRDVYRAGIAT 214 R+ G+ + Sbjct: 452 TAREACAKGLVS 463 >gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo sapiens] Length = 540 Score = 48.5 bits (114), Expect = 8e-06 Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 5/192 (2%) Query: 26 LRMSKHTDAAEEVLLEKK-GCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLI 84 +R+++ +++++K+ G T ++ R NAL +I++I L D + Sbjct: 274 IRLTESASTYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDSK--L 331 Query: 85 IIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYM-LNNAVGSCQKPYVALIHGIT 143 ++ A G FC G D + + + A + + N +KP V ++G Sbjct: 332 VLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPA 391 Query: 144 MGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKL-GYFLALTGFRL 202 +G G + A EK F P T G PD P++ GK + + G +L Sbjct: 392 IGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKL 451 Query: 203 KGRDVYRAGIAT 214 R+ G+ + Sbjct: 452 TAREACAKGLVS 463 >gi|150378541 enoyl Coenzyme A hydratase domain containing 2 [Homo sapiens] Length = 261 Score = 47.4 bits (111), Expect = 2e-05 Identities = 42/170 (24%), Positives = 64/170 (37%), Gaps = 35/170 (20%) Query: 49 ITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEK 108 I +NRP NAL + ++ L + +D + +++ + FCAG D++ E E+ Sbjct: 45 ILMNRPSARNALGNVFVSELLETLAQLREDRQVRVLLFRSGVKGVFCAGADLK---EREQ 101 Query: 109 AKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMP 168 + VF + L N + S + + Sbjct: 102 MSEAEVGVFVQRLRGLMNDIAS-------------------------------SAVMGLI 130 Query: 169 ETAIGLFPDVGGGYFLPRLQG-KLGYFLALTGFRLKGRDVYRAGIATHFV 217 ET GL P GG LPR G L L TG RL G + + G+ H V Sbjct: 131 ETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGTEAHVLGLVNHAV 180 >gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens] Length = 541 Score = 45.4 bits (106), Expect = 7e-05 Identities = 41/192 (21%), Positives = 77/192 (40%), Gaps = 5/192 (2%) Query: 26 LRMSKHTDAAEEVLLEKK-GCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLI 84 +R+++ +++++K+ G T ++ R NAL +I+++ L D + Sbjct: 275 IRLTESAITYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADDSK--L 332 Query: 85 IIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYM-LNNAVGSCQKPYVALIHGIT 143 ++ A G FC G D + + A + + N +KP V ++G Sbjct: 333 VLFSAAGSVFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPA 392 Query: 144 MGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKL-GYFLALTGFRL 202 +G G + A EK F P T G PD P++ GK + + G +L Sbjct: 393 IGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKL 452 Query: 203 KGRDVYRAGIAT 214 R+ G+ + Sbjct: 453 TAREACAKGLVS 464 >gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens] Length = 541 Score = 45.4 bits (106), Expect = 7e-05 Identities = 41/192 (21%), Positives = 77/192 (40%), Gaps = 5/192 (2%) Query: 26 LRMSKHTDAAEEVLLEKK-GCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLI 84 +R+++ +++++K+ G T ++ R NAL +I+++ L D + Sbjct: 275 IRLTESAITYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADDSK--L 332 Query: 85 IIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYM-LNNAVGSCQKPYVALIHGIT 143 ++ A G FC G D + + A + + N +KP V ++G Sbjct: 333 VLFSAAGSVFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPA 392 Query: 144 MGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKL-GYFLALTGFRL 202 +G G + A EK F P T G PD P++ GK + + G +L Sbjct: 393 IGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKL 452 Query: 203 KGRDVYRAGIAT 214 R+ G+ + Sbjct: 453 TAREACAKGLVS 464 >gi|45643119 peroxisomal D3,D2-enoyl-CoA isomerase isoform 1 [Homo sapiens] Length = 364 Score = 41.2 bits (95), Expect = 0.001 Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 22/201 (10%) Query: 30 KHTDAAEEVLLEKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGA 89 K T V+ + G T ++ NRPK NA+ M +I LK +D +I + Sbjct: 105 KSTGFETLVVTSEDGITKIM-FNRPKKKNAINTEMYHEIMRALKAASKDDS--IITVLTG 161 Query: 90 GGKAFCAGGDIRVISE------AEKAKQKIAPVFFREEYMLNNAVG---SCQKPYVALIH 140 G + +G D+ ++ EKAK +L VG KP +A+++ Sbjct: 162 NGDYYSSGNDLTNFTDIPPGGVEEKAKNNAV--------LLREFVGCFIDFPKPLIAVVN 213 Query: 141 GITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKL-GYFLALTG 199 G +G V L A+++ F P + +G P+ Y P++ + + G Sbjct: 214 GPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFG 273 Query: 200 FRLKGRDVYRAGIATH-FVDS 219 +L + G+ T F DS Sbjct: 274 KKLTAGEACAQGLVTEVFPDS 294 >gi|221307494 chromodomain protein, Y chromosome-like isoform a [Homo sapiens] Length = 544 Score = 40.0 bits (92), Expect = 0.003 Identities = 38/183 (20%), Positives = 72/183 (39%), Gaps = 12/183 (6%) Query: 38 VLLEKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAG 97 V+ ++ G T ++ + N+L ++R++ L D +++ A G FC G Sbjct: 291 VVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDSKLVLL--SAVGSVFCCG 348 Query: 98 GDI-----RVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSV 152 D R+ + ++ K+A N +KP + ++G +G G + Sbjct: 349 LDFIYFIRRLTDDRKRESTKMAEAIRN----FVNTFIQFKKPIIVAVNGPAIGLGASILP 404 Query: 153 HGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQ-GKLGYFLALTGFRLKGRDVYRAG 211 A EK F P T G PD P++ G + L+G +L ++ G Sbjct: 405 LCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKG 464 Query: 212 IAT 214 + + Sbjct: 465 LVS 467 >gi|221136756 chromodomain protein, Y chromosome-like isoform d [Homo sapiens] Length = 412 Score = 40.0 bits (92), Expect = 0.003 Identities = 38/183 (20%), Positives = 72/183 (39%), Gaps = 12/183 (6%) Query: 38 VLLEKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAG 97 V+ ++ G T ++ + N+L ++R++ L D +++ A G FC G Sbjct: 159 VVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDSKLVLL--SAVGSVFCCG 216 Query: 98 GDI-----RVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSV 152 D R+ + ++ K+A N +KP + ++G +G G + Sbjct: 217 LDFIYFIRRLTDDRKRESTKMAEAIRN----FVNTFIQFKKPIIVAVNGPAIGLGASILP 272 Query: 153 HGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQ-GKLGYFLALTGFRLKGRDVYRAG 211 A EK F P T G PD P++ G + L+G +L ++ G Sbjct: 273 LCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKG 332 Query: 212 IAT 214 + + Sbjct: 333 LVS 335 >gi|221136753 chromodomain protein, Y chromosome-like isoform d [Homo sapiens] Length = 412 Score = 40.0 bits (92), Expect = 0.003 Identities = 38/183 (20%), Positives = 72/183 (39%), Gaps = 12/183 (6%) Query: 38 VLLEKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAG 97 V+ ++ G T ++ + N+L ++R++ L D +++ A G FC G Sbjct: 159 VVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDSKLVLL--SAVGSVFCCG 216 Query: 98 GDI-----RVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSV 152 D R+ + ++ K+A N +KP + ++G +G G + Sbjct: 217 LDFIYFIRRLTDDRKRESTKMAEAIRN----FVNTFIQFKKPIIVAVNGPAIGLGASILP 272 Query: 153 HGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQ-GKLGYFLALTGFRLKGRDVYRAG 211 A EK F P T G PD P++ G + L+G +L ++ G Sbjct: 273 LCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKG 332 Query: 212 IAT 214 + + Sbjct: 333 LVS 335 >gi|157694520 enoyl Coenzyme A hydratase domain containing 1 isoform 3 [Homo sapiens] Length = 226 Score = 38.9 bits (89), Expect = 0.007 Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 9/168 (5%) Query: 64 MIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYM 123 M+ Q+ ++ + E E +I++GA F +G D+ + + +A F M Sbjct: 1 MMLQLLEKVIELENWTEGKGLIVRGAKN-TFSSGSDLNAVKSLGTPEDGMAVCMF----M 55 Query: 124 LNNAVGSCQKPY--VALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGG 181 N + P VAL+ G +GGG + FR+ T + +G+ P GG Sbjct: 56 QNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKIRFVHKEMGIIPSWGGT 115 Query: 182 YFLPRLQGKLGYFLALTG-FRLKGRDVYRAGIATHFV-DSEKLAMLEE 227 L + G L+G +L ++ G+ + S++ LEE Sbjct: 116 TRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVLQSSDETKSLEE 163 >gi|117414154 sodium channel associated protein 2 isoform b [Homo sapiens] Length = 939 Score = 36.2 bits (82), Expect = 0.043 Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 8/139 (5%) Query: 201 RLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFI 260 +LKG++V I + + + +LL + + EN + K +RDKS Sbjct: 792 QLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFENKEKKLKAERDKSIE 851 Query: 261 LEEH-MDKINSCFSA--NTVEEIIENLQQDGSSFALEQLKVIN--KMSPTSLKITLRQLM 315 L+++ M+K++S A V+ I+E Q + + A E+ K I+ + ++ +R+L+ Sbjct: 852 LQKNAMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANEKQKCIDSANLKVHQIEKEMRELL 911 Query: 316 EGSSKTLQEVLTMEYRLSQ 334 E +T + TME ++ Q Sbjct: 912 E---ETCKNKKTMEAKIKQ 927 >gi|117414162 sodium channel associated protein 2 isoform a [Homo sapiens] Length = 1032 Score = 36.2 bits (82), Expect = 0.043 Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 8/139 (5%) Query: 201 RLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFI 260 +LKG++V I + + + +LL + + EN + K +RDKS Sbjct: 885 QLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFENKEKKLKAERDKSIE 944 Query: 261 LEEH-MDKINSCFSA--NTVEEIIENLQQDGSSFALEQLKVIN--KMSPTSLKITLRQLM 315 L+++ M+K++S A V+ I+E Q + + A E+ K I+ + ++ +R+L+ Sbjct: 945 LQKNAMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANEKQKCIDSANLKVHQIEKEMRELL 1004 Query: 316 EGSSKTLQEVLTMEYRLSQ 334 E +T + TME ++ Q Sbjct: 1005 E---ETCKNKKTMEAKIKQ 1020 >gi|29294627 PTPRF interacting protein binding protein 1 isoform 1 [Homo sapiens] Length = 1005 Score = 35.8 bits (81), Expect = 0.056 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 10/94 (10%) Query: 217 VDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCFSANT 276 V E+LA LE D K ++ + + + + RD F LEEH +K+N+ Sbjct: 101 VYQERLARLEND----KESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKVNA------ 150 Query: 277 VEEIIENLQQDGSSFALEQLKVINKMSPTSLKIT 310 EE+++ +S ++L ++ ++S LK+T Sbjct: 151 TEEMLQQELLSRTSLETQKLDLMAEISNLKLKLT 184 >gi|111955063 GTP-binding protein 10 isoform 1 [Homo sapiens] Length = 308 Score = 32.0 bits (71), Expect = 0.81 Identities = 40/195 (20%), Positives = 89/195 (45%), Gaps = 29/195 (14%) Query: 88 GAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYMLN------------NAVGSC---Q 132 G GGK GGD+ V+++ +++ + R+ ++ +++ SC Sbjct: 37 GEGGK----GGDVWVVAQNRMTLKQLKDRYPRKRFVAGVGANSKFPNAGKSSLLSCVSHA 92 Query: 133 KPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGY-FLPRLQG-- 189 KP +A T+ +G ++ F+ + + +P G + G G+ FL ++ Sbjct: 93 KPAIADYAFTTLKPELGKIMYSDFKQIS---VADLPGLIEGAHMNKGMGHKFLKHIERTR 149 Query: 190 KLGYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLL---ALKSPSKENIASVLEN 246 +L + + ++GF+L YR T + +++L + +E+L AL + +K ++ + Sbjct: 150 QLLFVVDISGFQLSSHTQYRTAFETIILLTKELELYKEELQTKPALLAVNKMDLPDAQDK 209 Query: 247 YH-TESKIDRDKSFI 260 +H S++ K F+ Sbjct: 210 FHELMSQLQNPKDFL 224 >gi|50593027 enoyl Coenzyme A hydratase domain containing 1 isoform 2 [Homo sapiens] Length = 145 Score = 31.2 bits (69), Expect = 1.4 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 47 GVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVI 103 G++TLN P +NA + M+ Q+ ++ + E E +I++GA F +G D+ + Sbjct: 59 GILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGA-KNTFSSGSDLNAV 114 >gi|34878904 synaptonemal complex protein 1 [Homo sapiens] Length = 976 Score = 30.8 bits (68), Expect = 1.8 Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 8/110 (7%) Query: 218 DSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCFSANTV 277 D EK+ LE++ + ++ ++ +L + +D +F+LEE DK+N + Sbjct: 246 DYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKL 305 Query: 278 EEIIENLQQD-----GSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTL 322 + ENL+Q + LE +KV + S ++ K L + ++ ++KT+ Sbjct: 306 QS--ENLKQSIEKQHHLTKELEDIKVSLQRSVSTQK-ALEEDLQIATKTI 352 >gi|19923599 calmin [Homo sapiens] Length = 1002 Score = 30.0 bits (66), Expect = 3.1 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 7/90 (7%) Query: 233 KSPSKENIASVLENYHTESKIDRDKSFILEEHMDKI-NSCFSANTVEEIIENLQQDGSSF 291 +SP+ ENIA+ LE T+ I K +H+D + +S F A + ++L++D S + Sbjct: 840 ESPNLENIANPLEENVTKESISSKKK-EKRKHVDHVESSLFVAPGSVQSSDDLEEDSSDY 898 Query: 292 ALEQLKVINKMSPTSLKITLRQLMEGSSKT 321 ++ ++ S + I LR+ SS++ Sbjct: 899 SIP-----SRTSHSDSSIYLRRHTHRSSES 923 >gi|66363686 NEDD8 activating enzyme E1 subunit 1 isoform b [Homo sapiens] Length = 528 Score = 29.6 bits (65), Expect = 4.0 Identities = 19/68 (27%), Positives = 32/68 (47%) Query: 251 SKIDRDKSFILEEHMDKINSCFSANTVEEIIENLQQDGSSFALEQLKVINKMSPTSLKIT 310 S I ++++ E + ++NS S + VEE ENL + SF V+ P S + Sbjct: 73 SSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLR 132 Query: 311 LRQLMEGS 318 L ++ S Sbjct: 133 LADVLWNS 140 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.321 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,645,359 Number of Sequences: 37866 Number of extensions: 480717 Number of successful extensions: 1186 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 26 Number of HSP's that attempted gapping in prelim test: 1159 Number of HSP's gapped (non-prelim): 43 length of query: 338 length of database: 18,247,518 effective HSP length: 103 effective length of query: 235 effective length of database: 14,347,320 effective search space: 3371620200 effective search space used: 3371620200 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.