Search of human proteins with 34740339

Search of human proteins with 34740339

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|34740339 dead end homolog 1 [Homo sapiens]
         (353 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|34740339 dead end homolog 1 [Homo sapiens]                         721   0.0  
gi|21450675 RNA binding motif protein 46 [Homo sapiens]               189   2e-48
gi|148833513 RNA binding motif protein 47 isoform a [Homo sapiens]    184   1e-46
gi|148833511 RNA binding motif protein 47 isoform b [Homo sapiens]    184   1e-46
gi|20357575 apobec-1 complementation factor isoform 2 [Homo sapi...   183   2e-46
gi|20357572 apobec-1 complementation factor isoform 1 [Homo sapi...   183   2e-46
gi|20357578 apobec-1 complementation factor isoform 3 [Homo sapi...   167   1e-41
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4...   136   2e-32
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [...   136   2e-32
gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting ...   134   9e-32
gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting ...   134   9e-32
gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting ...   134   9e-32
gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ...   134   9e-32
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3...   132   5e-31
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1...   132   5e-31
gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting ...   123   2e-28
gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ...   123   2e-28
gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa...    68   1e-11
gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens]           58   1e-08
gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo s...    57   2e-08
gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo s...    55   7e-08
gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo s...    55   9e-08
gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo sa...    55   9e-08
gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]           54   2e-07
gi|109240550 paraspeckle protein 1 [Homo sapiens]                      50   2e-06
gi|224028246 non-POU domain containing, octamer-binding isoform ...    50   3e-06
gi|224028244 non-POU domain containing, octamer-binding isoform ...    50   3e-06
gi|34932414 non-POU domain containing, octamer-binding isoform 1...    50   3e-06
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    50   3e-06
gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4...    50   4e-06

>gi|34740339 dead end homolog 1 [Homo sapiens]
          Length = 353

 Score =  721 bits (1862), Expect = 0.0
 Identities = 353/353 (100%), Positives = 353/353 (100%)

Query: 1   MQSKRDCELWCERVNPENKAALEAWVRETGIRLVQVNGQRKYGGPPPGWVGSPPPAGSEV 60
           MQSKRDCELWCERVNPENKAALEAWVRETGIRLVQVNGQRKYGGPPPGWVGSPPPAGSEV
Sbjct: 1   MQSKRDCELWCERVNPENKAALEAWVRETGIRLVQVNGQRKYGGPPPGWVGSPPPAGSEV 60

Query: 61  FIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIATLHN 120
           FIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIATLHN
Sbjct: 61  FIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIATLHN 120

Query: 121 HPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ 180
           HPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ
Sbjct: 121 HPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ 180

Query: 181 IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKPDLKQRLRQQLVGPFLRSPQPEG 240
           IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKPDLKQRLRQQLVGPFLRSPQPEG
Sbjct: 181 IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKPDLKQRLRQQLVGPFLRSPQPEG 240

Query: 241 SQLALARDKLGFQGARATLQLLCQRMKLGSPVFLTKCLGIGPAGWHRFWYQVVIPGHPVP 300
           SQLALARDKLGFQGARATLQLLCQRMKLGSPVFLTKCLGIGPAGWHRFWYQVVIPGHPVP
Sbjct: 241 SQLALARDKLGFQGARATLQLLCQRMKLGSPVFLTKCLGIGPAGWHRFWYQVVIPGHPVP 300

Query: 301 FSGLIWVVLTLDGRDGHEVAKDAVSVRLLQALSESGANLLWSAGAEAGTMVKQ 353
           FSGLIWVVLTLDGRDGHEVAKDAVSVRLLQALSESGANLLWSAGAEAGTMVKQ
Sbjct: 301 FSGLIWVVLTLDGRDGHEVAKDAVSVRLLQALSESGANLLWSAGAEAGTMVKQ 353


>gi|21450675 RNA binding motif protein 46 [Homo sapiens]
          Length = 533

 Score =  189 bits (481), Expect = 2e-48
 Identities = 89/209 (42%), Positives = 135/209 (64%), Gaps = 2/209 (0%)

Query: 13  RVNPENKAALEAWVRETGIRLVQVNGQRKYGGPPPGWVGSPPPAGSEVFIGRLPQDVYEH 72
           R   +N+AAL A + +TG  +VQ NGQRK+GGPPPGW G PPP G EVF+G++P+D+YE 
Sbjct: 16  RTGIQNEAALLALMEKTGYNMVQENGQRKFGGPPPGWEGPPPPRGCEVFVGKIPRDMYED 75

Query: 73  QLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCPLLVC 132
           +L+P+F+R G++YEFRLMM FSG NRG+A+  Y+++  AQ AI  L+N+ +RP   + VC
Sbjct: 76  ELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVC 135

Query: 133 RSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ--IALLKFSSHR 190
            S + C L +  +P    +  +L  ++ +  G+ +  + PS          A +++ SHR
Sbjct: 136 VSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHR 195

Query: 191 AAAMAKKALVEGQSHLCGEQVAVEWLKPD 219
           AAAMA++ L+ G   L G  + V+W  P+
Sbjct: 196 AAAMARRKLIPGTFQLWGHTIQVDWADPE 224


>gi|148833513 RNA binding motif protein 47 isoform a [Homo sapiens]
          Length = 593

 Score =  184 bits (466), Expect = 1e-46
 Identities = 89/205 (43%), Positives = 130/205 (63%), Gaps = 2/205 (0%)

Query: 18  NKAALEAWVRETGIRLVQVNGQRKYGGPPPGWVGSPPPAGSEVFIGRLPQDVYEHQLIPL 77
           N+AAL A +  TG  +VQ NGQRKYGGPPPGW G  P  G EVF+G++P+DVYE +L+P+
Sbjct: 31  NEAALLALMERTGYSMVQENGQRKYGGPPPGWEGPHPQRGCEVFVGKIPRDVYEDELVPV 90

Query: 78  FQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCPLLVCRSTEK 137
           F+ VGR+YE RLMM F G NRG+A+  Y  +  A+ A+  L+N+ +RP   L VC S + 
Sbjct: 91  FEAVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDN 150

Query: 138 CELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ--IALLKFSSHRAAAMA 195
           C L + G+P    R  +L  +  +  G+ +  +  S          A +++ SHRAAAMA
Sbjct: 151 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA 210

Query: 196 KKALVEGQSHLCGEQVAVEWLKPDL 220
           ++ L+ G+  L G Q+AV+W +P++
Sbjct: 211 RRKLMPGRIQLWGHQIAVDWAEPEI 235


>gi|148833511 RNA binding motif protein 47 isoform b [Homo sapiens]
          Length = 524

 Score =  184 bits (466), Expect = 1e-46
 Identities = 89/205 (43%), Positives = 130/205 (63%), Gaps = 2/205 (0%)

Query: 18  NKAALEAWVRETGIRLVQVNGQRKYGGPPPGWVGSPPPAGSEVFIGRLPQDVYEHQLIPL 77
           N+AAL A +  TG  +VQ NGQRKYGGPPPGW G  P  G EVF+G++P+DVYE +L+P+
Sbjct: 31  NEAALLALMERTGYSMVQENGQRKYGGPPPGWEGPHPQRGCEVFVGKIPRDVYEDELVPV 90

Query: 78  FQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCPLLVCRSTEK 137
           F+ VGR+YE RLMM F G NRG+A+  Y  +  A+ A+  L+N+ +RP   L VC S + 
Sbjct: 91  FEAVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDN 150

Query: 138 CELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ--IALLKFSSHRAAAMA 195
           C L + G+P    R  +L  +  +  G+ +  +  S          A +++ SHRAAAMA
Sbjct: 151 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA 210

Query: 196 KKALVEGQSHLCGEQVAVEWLKPDL 220
           ++ L+ G+  L G Q+AV+W +P++
Sbjct: 211 RRKLMPGRIQLWGHQIAVDWAEPEI 235


>gi|20357575 apobec-1 complementation factor isoform 2 [Homo
           sapiens]
          Length = 594

 Score =  183 bits (464), Expect = 2e-46
 Identities = 88/207 (42%), Positives = 136/207 (65%), Gaps = 2/207 (0%)

Query: 17  ENKAALEAWVRETGIRLVQVNGQRKYGGPPPGWVGSPPPAGSEVFIGRLPQDVYEHQLIP 76
           + +AAL A V+ TG  LVQ NGQRKYGGPPPGW  +PP  G E+FIG+LP+D++E +LIP
Sbjct: 15  QKEAALRALVQRTGYSLVQENGQRKYGGPPPGWDAAPPERGCEIFIGKLPRDLFEDELIP 74

Query: 77  LFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCPLLVCRSTE 136
           L +++G++YE R+MM F+G NRG+A+  +S++  A+ AI  L+N+ +R    L VC S +
Sbjct: 75  LCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVD 134

Query: 137 KCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ--IALLKFSSHRAAAM 194
            C L V G+P    R  +L  ++ +  G+ +  + PS          A +++ SHRAAAM
Sbjct: 135 NCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAM 194

Query: 195 AKKALVEGQSHLCGEQVAVEWLKPDLK 221
           A++ L+ G+  L G  +AV+W +P+++
Sbjct: 195 ARRKLLPGRIQLWGHGIAVDWAEPEVE 221


>gi|20357572 apobec-1 complementation factor isoform 1 [Homo
           sapiens]
          Length = 586

 Score =  183 bits (464), Expect = 2e-46
 Identities = 88/207 (42%), Positives = 136/207 (65%), Gaps = 2/207 (0%)

Query: 17  ENKAALEAWVRETGIRLVQVNGQRKYGGPPPGWVGSPPPAGSEVFIGRLPQDVYEHQLIP 76
           + +AAL A V+ TG  LVQ NGQRKYGGPPPGW  +PP  G E+FIG+LP+D++E +LIP
Sbjct: 15  QKEAALRALVQRTGYSLVQENGQRKYGGPPPGWDAAPPERGCEIFIGKLPRDLFEDELIP 74

Query: 77  LFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCPLLVCRSTE 136
           L +++G++YE R+MM F+G NRG+A+  +S++  A+ AI  L+N+ +R    L VC S +
Sbjct: 75  LCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVD 134

Query: 137 KCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ--IALLKFSSHRAAAM 194
            C L V G+P    R  +L  ++ +  G+ +  + PS          A +++ SHRAAAM
Sbjct: 135 NCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAM 194

Query: 195 AKKALVEGQSHLCGEQVAVEWLKPDLK 221
           A++ L+ G+  L G  +AV+W +P+++
Sbjct: 195 ARRKLLPGRIQLWGHGIAVDWAEPEVE 221


>gi|20357578 apobec-1 complementation factor isoform 3 [Homo
           sapiens]
          Length = 594

 Score =  167 bits (424), Expect = 1e-41
 Identities = 82/203 (40%), Positives = 132/203 (65%), Gaps = 4/203 (1%)

Query: 21  ALEAWVRETGIRLVQVNGQRKYGGPPPGWVGSPPPAGSEVFIGRLPQDVYEHQLIPLFQR 80
           AL++ + +T   L + NGQRKYGGPPPGW  +PP  G E+FIG+LP+D++E +LIPL ++
Sbjct: 29  ALQSIILQT--LLEKENGQRKYGGPPPGWDAAPPERGCEIFIGKLPRDLFEDELIPLCEK 86

Query: 81  VGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCPLLVCRSTEKCEL 140
           +G++YE R+MM F+G NRG+A+  +S++  A+ AI  L+N+ +R    L VC S + C L
Sbjct: 87  IGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRL 146

Query: 141 SVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ--IALLKFSSHRAAAMAKKA 198
            V G+P    R  +L  ++ +  G+ +  + PS          A +++ SHRAAAMA++ 
Sbjct: 147 FVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRK 206

Query: 199 LVEGQSHLCGEQVAVEWLKPDLK 221
           L+ G+  L G  +AV+W +P+++
Sbjct: 207 LLPGRIQLWGHGIAVDWAEPEVE 229


>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
           [Homo sapiens]
          Length = 532

 Score =  136 bits (343), Expect = 2e-32
 Identities = 75/212 (35%), Positives = 115/212 (54%), Gaps = 5/212 (2%)

Query: 12  ERVNPENKAALEAWVRETGIRLVQVNGQRKYGGPPPGWV--GSPPPAGSEVFIGRLPQDV 69
           E     ++A ++A +  TG  L    GQRKYGGPPP  V  G  P  G+EVF+G++P+D+
Sbjct: 16  ESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDL 75

Query: 70  YEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCP 128
           YE +L+PLF++ G +++ RLMM   SG NRG+A+  +  +  AQ A+    ++ +RP   
Sbjct: 76  YEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKH 135

Query: 129 LLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ--IALLKF 186
           L VC S     L V  +P N T+  +L     +  GL +  L   P           L++
Sbjct: 136 LGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEY 195

Query: 187 SSHRAAAMAKKALVEGQSHLCGEQVAVEWLKP 218
             H++AA A++ L+ G+  + G  V VEW  P
Sbjct: 196 EDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 227


>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
           [Homo sapiens]
          Length = 633

 Score =  136 bits (343), Expect = 2e-32
 Identities = 75/212 (35%), Positives = 115/212 (54%), Gaps = 5/212 (2%)

Query: 12  ERVNPENKAALEAWVRETGIRLVQVNGQRKYGGPPPGWV--GSPPPAGSEVFIGRLPQDV 69
           E     ++A ++A +  TG  L    GQRKYGGPPP  V  G  P  G+EVF+G++P+D+
Sbjct: 117 ESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDL 176

Query: 70  YEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCP 128
           YE +L+PLF++ G +++ RLMM   SG NRG+A+  +  +  AQ A+    ++ +RP   
Sbjct: 177 YEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKH 236

Query: 129 LLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ--IALLKF 186
           L VC S     L V  +P N T+  +L     +  GL +  L   P           L++
Sbjct: 237 LGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEY 296

Query: 187 SSHRAAAMAKKALVEGQSHLCGEQVAVEWLKP 218
             H++AA A++ L+ G+  + G  V VEW  P
Sbjct: 297 EDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 328


>gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 6 [Homo sapiens]
          Length = 562

 Score =  134 bits (338), Expect = 9e-32
 Identities = 70/206 (33%), Positives = 114/206 (55%), Gaps = 5/206 (2%)

Query: 18  NKAALEAWVRETGIRLVQVNGQRKYGGPPPGWV--GSPPPAGSEVFIGRLPQDVYEHQLI 75
           ++A ++A +  TG  L    GQRKYGGPPP  V  G  P  G+E+F+G++P+D++E +L+
Sbjct: 120 DEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELV 179

Query: 76  PLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCPLLVCRS 134
           PLF++ G +++ RLMM   +GLNRG+A+  + ++  AQ A+   +NH +R    + VC S
Sbjct: 180 PLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCIS 239

Query: 135 TEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ--IALLKFSSHRAA 192
                L V  +P + T+  +L     +  GL +  L   P           L++  H+ A
Sbjct: 240 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 299

Query: 193 AMAKKALVEGQSHLCGEQVAVEWLKP 218
           A A++ L+ G+  + G    VEW  P
Sbjct: 300 AQARRRLMSGKVKVWGNVGTVEWADP 325


>gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 2 [Homo sapiens]
          Length = 464

 Score =  134 bits (338), Expect = 9e-32
 Identities = 70/206 (33%), Positives = 114/206 (55%), Gaps = 5/206 (2%)

Query: 18  NKAALEAWVRETGIRLVQVNGQRKYGGPPPGWV--GSPPPAGSEVFIGRLPQDVYEHQLI 75
           ++A ++A +  TG  L    GQRKYGGPPP  V  G  P  G+E+F+G++P+D++E +L+
Sbjct: 22  DEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELV 81

Query: 76  PLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCPLLVCRS 134
           PLF++ G +++ RLMM   +GLNRG+A+  + ++  AQ A+   +NH +R    + VC S
Sbjct: 82  PLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCIS 141

Query: 135 TEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ--IALLKFSSHRAA 192
                L V  +P + T+  +L     +  GL +  L   P           L++  H+ A
Sbjct: 142 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 201

Query: 193 AMAKKALVEGQSHLCGEQVAVEWLKP 218
           A A++ L+ G+  + G    VEW  P
Sbjct: 202 AQARRRLMSGKVKVWGNVGTVEWADP 227


>gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 5 [Homo sapiens]
          Length = 561

 Score =  134 bits (338), Expect = 9e-32
 Identities = 70/206 (33%), Positives = 114/206 (55%), Gaps = 5/206 (2%)

Query: 18  NKAALEAWVRETGIRLVQVNGQRKYGGPPPGWV--GSPPPAGSEVFIGRLPQDVYEHQLI 75
           ++A ++A +  TG  L    GQRKYGGPPP  V  G  P  G+E+F+G++P+D++E +L+
Sbjct: 120 DEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELV 179

Query: 76  PLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCPLLVCRS 134
           PLF++ G +++ RLMM   +GLNRG+A+  + ++  AQ A+   +NH +R    + VC S
Sbjct: 180 PLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCIS 239

Query: 135 TEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ--IALLKFSSHRAA 192
                L V  +P + T+  +L     +  GL +  L   P           L++  H+ A
Sbjct: 240 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 299

Query: 193 AMAKKALVEGQSHLCGEQVAVEWLKP 218
           A A++ L+ G+  + G    VEW  P
Sbjct: 300 AQARRRLMSGKVKVWGNVGTVEWADP 325


>gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 1 [Homo sapiens]
          Length = 623

 Score =  134 bits (338), Expect = 9e-32
 Identities = 70/206 (33%), Positives = 114/206 (55%), Gaps = 5/206 (2%)

Query: 18  NKAALEAWVRETGIRLVQVNGQRKYGGPPPGWV--GSPPPAGSEVFIGRLPQDVYEHQLI 75
           ++A ++A +  TG  L    GQRKYGGPPP  V  G  P  G+E+F+G++P+D++E +L+
Sbjct: 120 DEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELV 179

Query: 76  PLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCPLLVCRS 134
           PLF++ G +++ RLMM   +GLNRG+A+  + ++  AQ A+   +NH +R    + VC S
Sbjct: 180 PLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCIS 239

Query: 135 TEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ--IALLKFSSHRAA 192
                L V  +P + T+  +L     +  GL +  L   P           L++  H+ A
Sbjct: 240 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 299

Query: 193 AMAKKALVEGQSHLCGEQVAVEWLKP 218
           A A++ L+ G+  + G    VEW  P
Sbjct: 300 AQARRRLMSGKVKVWGNVGTVEWADP 325


>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
           [Homo sapiens]
          Length = 535

 Score =  132 bits (332), Expect = 5e-31
 Identities = 76/215 (35%), Positives = 116/215 (53%), Gaps = 8/215 (3%)

Query: 12  ERVNPENKAALEAWVRETGIRLVQVNGQRKYGGPPPGWV--GSPPPAGSEVFIGRLPQDV 69
           E     ++A ++A +  TG  L    GQRKYGGPPP  V  G  P  G+EVF+G++P+D+
Sbjct: 16  ESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDL 75

Query: 70  YEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCP 128
           YE +L+PLF++ G +++ RLMM   SG NRG+A+  +  +  AQ A+    ++ +RP   
Sbjct: 76  YEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKH 135

Query: 129 LLVCRSTEKCELSVDGLPPNLTRSALL---LALQPLGPGLQEARLLPSPGPAPGQ--IAL 183
           L VC S     L V  +P N T+  +L     +  L  GL +  L   P           
Sbjct: 136 LGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCF 195

Query: 184 LKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKP 218
           L++  H++AA A++ L+ G+  + G  V VEW  P
Sbjct: 196 LEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 230


>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
           [Homo sapiens]
          Length = 636

 Score =  132 bits (332), Expect = 5e-31
 Identities = 76/215 (35%), Positives = 116/215 (53%), Gaps = 8/215 (3%)

Query: 12  ERVNPENKAALEAWVRETGIRLVQVNGQRKYGGPPPGWV--GSPPPAGSEVFIGRLPQDV 69
           E     ++A ++A +  TG  L    GQRKYGGPPP  V  G  P  G+EVF+G++P+D+
Sbjct: 117 ESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDL 176

Query: 70  YEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCP 128
           YE +L+PLF++ G +++ RLMM   SG NRG+A+  +  +  AQ A+    ++ +RP   
Sbjct: 177 YEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKH 236

Query: 129 LLVCRSTEKCELSVDGLPPNLTRSALL---LALQPLGPGLQEARLLPSPGPAPGQ--IAL 183
           L VC S     L V  +P N T+  +L     +  L  GL +  L   P           
Sbjct: 237 LGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCF 296

Query: 184 LKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKP 218
           L++  H++AA A++ L+ G+  + G  V VEW  P
Sbjct: 297 LEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 331


>gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 3 [Homo sapiens]
          Length = 527

 Score =  123 bits (309), Expect = 2e-28
 Identities = 65/199 (32%), Positives = 108/199 (54%), Gaps = 5/199 (2%)

Query: 18  NKAALEAWVRETGIRLVQVNGQRKYGGPPPGWV--GSPPPAGSEVFIGRLPQDVYEHQLI 75
           ++A ++A +  TG  L    GQRKYGGPPP  V  G  P  G+E+F+G++P+D++E +L+
Sbjct: 120 DEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELV 179

Query: 76  PLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCPLLVCRS 134
           PLF++ G +++ RLMM   +GLNRG+A+  + ++  AQ A+   +NH +R    + VC S
Sbjct: 180 PLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCIS 239

Query: 135 TEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ--IALLKFSSHRAA 192
                L V  +P + T+  +L     +  GL +  L   P           L++  H+ A
Sbjct: 240 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 299

Query: 193 AMAKKALVEGQSHLCGEQV 211
           A  K   V   ++   E++
Sbjct: 300 AQVKVLFVRNLANTVTEEI 318


>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 4 [Homo sapiens]
          Length = 588

 Score =  123 bits (309), Expect = 2e-28
 Identities = 65/199 (32%), Positives = 108/199 (54%), Gaps = 5/199 (2%)

Query: 18  NKAALEAWVRETGIRLVQVNGQRKYGGPPPGWV--GSPPPAGSEVFIGRLPQDVYEHQLI 75
           ++A ++A +  TG  L    GQRKYGGPPP  V  G  P  G+E+F+G++P+D++E +L+
Sbjct: 120 DEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELV 179

Query: 76  PLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCPLLVCRS 134
           PLF++ G +++ RLMM   +GLNRG+A+  + ++  AQ A+   +NH +R    + VC S
Sbjct: 180 PLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCIS 239

Query: 135 TEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ--IALLKFSSHRAA 192
                L V  +P + T+  +L     +  GL +  L   P           L++  H+ A
Sbjct: 240 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 299

Query: 193 AMAKKALVEGQSHLCGEQV 211
           A  K   V   ++   E++
Sbjct: 300 AQVKVLFVRNLANTVTEEI 318


>gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo
           sapiens]
          Length = 485

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 60/207 (28%), Positives = 94/207 (45%), Gaps = 23/207 (11%)

Query: 46  PPGWVGSPPPAGS----------EVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFS 94
           P G  G  PP G           ++F+G++P+ + E  L PLF++ GR+YE  ++   ++
Sbjct: 23  PVGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYT 82

Query: 95  GLNRGFAYARYSSRRGAQAAIATLHNHPLRPSC--PLLV------CRSTEKCELSVDGLP 146
           G+++G A+  Y +R  A  A   LH     P    P+ V       R     +L V  L 
Sbjct: 83  GMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLN 142

Query: 147 PNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQIALLKFSSHRAAAMAKKALVEGQSHL 206
              +   +L   QP G  + E  +L  P  +    A +KFSSH  A  A  AL   Q+  
Sbjct: 143 KQQSEEDVLRLFQPFGV-IDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 201

Query: 207 -CGEQVAVEWLKPDLKQRLR--QQLVG 230
                + V++   D ++ LR  QQ+VG
Sbjct: 202 GASSSLVVKFADTDKERTLRRMQQMVG 228



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 55  PAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQA 113
           P G  +FI  LPQ+  + +L  +F   G +   ++ M   +  ++ F +  + +   AQA
Sbjct: 397 PEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQA 456

Query: 114 AIATLH 119
           AI  ++
Sbjct: 457 AIQAMN 462


>gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens]
          Length = 481

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 56/198 (28%), Positives = 91/198 (45%), Gaps = 17/198 (8%)

Query: 59  EVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQAAIAT 117
           ++F+G++P+ + E  L PLF+  GR+YE  ++    +GL++G A+  Y +R  A  A + 
Sbjct: 47  KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 106

Query: 118 LHNHPLRPSC--PLLVCRST-----EKCELSVDGLPPNLTRSALLLALQPLGPGLQEARL 170
           LH     P    P+ V  +      E  +L V  L        +    QP G  ++E  +
Sbjct: 107 LHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFG-HIEECTV 165

Query: 171 LPSPGPAPGQIALLKFSSHRAAAMAKKALVEGQSHLCG--EQVAVEWLKPDLKQRLR--Q 226
           L SP       A +KF S   A  A + L  G   + G    + V+    D ++ LR  Q
Sbjct: 166 LRSPDGTSKGCAFVKFGSQGEAQAAIRGL-HGSRTMAGASSSLVVKLADTDRERALRRMQ 224

Query: 227 QL---VGPFLRSPQPEGS 241
           Q+   +G F  +P P G+
Sbjct: 225 QMAGHLGAFHPAPLPLGA 242



 Score = 39.3 bits (90), Expect = 0.005
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 7/72 (9%)

Query: 55  PAGSE-------VFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSS 107
           PA SE       +F+G L +   E  +  LFQ  G + E  ++ +  G ++G A+ ++ S
Sbjct: 124 PAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGS 183

Query: 108 RRGAQAAIATLH 119
           +  AQAAI  LH
Sbjct: 184 QGEAQAAIRGLH 195


>gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo
           sapiens]
          Length = 448

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 12/183 (6%)

Query: 59  EVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQAAIAT 117
           ++FIG++P+++ E  L PLF+  G++YE  ++   F+G+++G A+  Y  R  A  A + 
Sbjct: 55  KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114

Query: 118 LHNHPLRPSC--PLLVCRST-----EKCELSVDGLPPNLTRSALLLALQPLGPGLQEARL 170
           LH     P    P+ V  +      E  +L V  L    +   +    +  G  ++E  +
Sbjct: 115 LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLFEAFG-NIEECTI 173

Query: 171 LPSPGPAPGQIALLKFSSHRAAAMAKKALVEGQSHL-CGEQVAVEWLKPDLKQRLR--QQ 227
           L  P       A +K+SSH  A  A  AL   Q+       + V++   D ++ +R  QQ
Sbjct: 174 LRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQ 233

Query: 228 LVG 230
           + G
Sbjct: 234 MAG 236


>gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo
           sapiens]
          Length = 484

 Score = 55.5 bits (132), Expect = 7e-08
 Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 21/192 (10%)

Query: 59  EVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQAAIAT 117
           ++FIG++P+++ E  L PLF+  G++YE  ++   F+G+++G A+  Y  R  A  A + 
Sbjct: 55  KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114

Query: 118 LH--------NHPLRPSCPLLVCRSTEKC--------ELSVDGLPPNLTRSALLLALQPL 161
           LH        N P++        R    C        +L V  L    +   +    +  
Sbjct: 115 LHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSHRKLFVGMLNKQQSEDDVRRLFEAF 174

Query: 162 GPGLQEARLLPSPGPAPGQIALLKFSSHRAAAMAKKALVEGQSHL-CGEQVAVEWLKPDL 220
           G  ++E  +L  P       A +K+SSH  A  A  AL   Q+       + V++   D 
Sbjct: 175 G-NIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDK 233

Query: 221 KQRLR--QQLVG 230
           ++ +R  QQ+ G
Sbjct: 234 ERTMRRMQQMAG 245



 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 24/72 (33%), Positives = 38/72 (52%)

Query: 54  PPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQA 113
           PP+  ++F+G L +   E  +  LF+  G + E  ++    G ++G A+ +YSS   AQA
Sbjct: 147 PPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQA 206

Query: 114 AIATLHNHPLRP 125
           AI  LH     P
Sbjct: 207 AINALHGSQTMP 218


>gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo
           sapiens]
          Length = 485

 Score = 55.1 bits (131), Expect = 9e-08
 Identities = 49/193 (25%), Positives = 86/193 (44%), Gaps = 22/193 (11%)

Query: 59  EVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQAAIAT 117
           ++FIG++P+++ E  L PLF+  G++YE  ++   F+G+++G A+  Y  R  A  A + 
Sbjct: 55  KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114

Query: 118 LH--------NHPLRPSCPLLVCRSTEKC---------ELSVDGLPPNLTRSALLLALQP 160
           LH        N P++        R    C         +L V  L    +   +    + 
Sbjct: 115 LHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEA 174

Query: 161 LGPGLQEARLLPSPGPAPGQIALLKFSSHRAAAMAKKALVEGQSHL-CGEQVAVEWLKPD 219
            G  ++E  +L  P       A +K+SSH  A  A  AL   Q+       + V++   D
Sbjct: 175 FG-NIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTD 233

Query: 220 LKQRLR--QQLVG 230
            ++ +R  QQ+ G
Sbjct: 234 KERTMRRMQQMAG 246



 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 24/73 (32%), Positives = 37/73 (50%)

Query: 53  PPPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQ 112
           PP    ++F+G L +   E  +  LF+  G + E  ++    G ++G A+ +YSS   AQ
Sbjct: 147 PPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQ 206

Query: 113 AAIATLHNHPLRP 125
           AAI  LH     P
Sbjct: 207 AAINALHGSQTMP 219


>gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo
           sapiens]
          Length = 486

 Score = 55.1 bits (131), Expect = 9e-08
 Identities = 49/193 (25%), Positives = 86/193 (44%), Gaps = 22/193 (11%)

Query: 59  EVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQAAIAT 117
           ++FIG++P+++ E  L PLF+  G++YE  ++   F+G+++G A+  Y  R  A  A + 
Sbjct: 55  KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114

Query: 118 LH--------NHPLRPSCPLLVCRSTEKC---------ELSVDGLPPNLTRSALLLALQP 160
           LH        N P++        R    C         +L V  L    +   +    + 
Sbjct: 115 LHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEA 174

Query: 161 LGPGLQEARLLPSPGPAPGQIALLKFSSHRAAAMAKKALVEGQSHL-CGEQVAVEWLKPD 219
            G  ++E  +L  P       A +K+SSH  A  A  AL   Q+       + V++   D
Sbjct: 175 FG-NIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTD 233

Query: 220 LKQRLR--QQLVG 230
            ++ +R  QQ+ G
Sbjct: 234 KERTMRRMQQMAG 246



 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 24/73 (32%), Positives = 37/73 (50%)

Query: 53  PPPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQ 112
           PP    ++F+G L +   E  +  LF+  G + E  ++    G ++G A+ +YSS   AQ
Sbjct: 147 PPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQ 206

Query: 113 AAIATLHNHPLRP 125
           AAI  LH     P
Sbjct: 207 AAINALHGSQTMP 219


>gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
          Length = 465

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 9/153 (5%)

Query: 55  PAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQA 113
           P   ++F+G++P+ + E  L P+F++ GR++E  ++   ++GL++G A+  Y +R  A  
Sbjct: 4   PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63

Query: 114 AIATLHNHPLRPSC--PLLVCRST-----EKCELSVDGLPPNLTRSALLLALQPLGPGLQ 166
           A + LH     P    P+ V  +      E  +L V  L    T   +    +P G  + 
Sbjct: 64  AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-ID 122

Query: 167 EARLLPSPGPAPGQIALLKFSSHRAAAMAKKAL 199
           E  +L  P       A +KF +H  A  A   L
Sbjct: 123 ECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTL 155



 Score = 36.6 bits (83), Expect = 0.035
 Identities = 18/67 (26%), Positives = 36/67 (53%)

Query: 59  EVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIATL 118
           ++F+G L +   +  +  +F+  G + E  ++    G ++G A+ ++ +   AQAAI TL
Sbjct: 96  KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTL 155

Query: 119 HNHPLRP 125
           H+    P
Sbjct: 156 HSSRTLP 162



 Score = 30.8 bits (68), Expect = 1.9
 Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 55  PAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQA 113
           P G  +FI  LPQ+  + +++ +F   G +   ++ +   +  ++ F +  + +   AQA
Sbjct: 377 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQA 436

Query: 114 AIATLH 119
           AI  ++
Sbjct: 437 AIQAMN 442


>gi|109240550 paraspeckle protein 1 [Homo sapiens]
          Length = 523

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 44/140 (31%), Positives = 62/140 (44%), Gaps = 10/140 (7%)

Query: 60  VFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIATLH 119
           +F+G LP D+ E     LF+R G   E      F   +RGF + R  SR  A+ A A L 
Sbjct: 84  LFVGNLPTDITEEDFKRLFERYGEPSE-----VFINRDRGFGFIRLESRTLAEIAKAELD 138

Query: 120 NHPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPG 179
              L+ S PL +  +T    L+V  L P ++   L  A    GP  +   ++   G A G
Sbjct: 139 GTILK-SRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 197

Query: 180 QIALLKFSSHRAAAMAKKAL 199
           +     F    A   A+KAL
Sbjct: 198 K----GFVEFAAKPPARKAL 213


>gi|224028246 non-POU domain containing, octamer-binding isoform 1
           [Homo sapiens]
          Length = 471

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 7/145 (4%)

Query: 58  SEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIAT 117
           S +F+G LP D+ E ++  LF++ G+  E      F   ++GF + R  +R  A+ A   
Sbjct: 74  SRLFVGNLPPDITEEEMRKLFEKYGKAGE-----VFIHKDKGFGFIRLETRTLAEIAKVE 128

Query: 118 LHNHPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPA 177
           L N PLR    L V  +     L+V  LP  ++   L  A    G  ++ A ++      
Sbjct: 129 LDNMPLRGK-QLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQ-VERAVVIVDDRGR 186

Query: 178 PGQIALLKFSSHRAAAMAKKALVEG 202
           P    +++FS   AA  A     EG
Sbjct: 187 PSGKGIVEFSGKPAARKALDRCSEG 211


>gi|224028244 non-POU domain containing, octamer-binding isoform 1
           [Homo sapiens]
          Length = 471

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 7/145 (4%)

Query: 58  SEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIAT 117
           S +F+G LP D+ E ++  LF++ G+  E      F   ++GF + R  +R  A+ A   
Sbjct: 74  SRLFVGNLPPDITEEEMRKLFEKYGKAGE-----VFIHKDKGFGFIRLETRTLAEIAKVE 128

Query: 118 LHNHPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPA 177
           L N PLR    L V  +     L+V  LP  ++   L  A    G  ++ A ++      
Sbjct: 129 LDNMPLRGK-QLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQ-VERAVVIVDDRGR 186

Query: 178 PGQIALLKFSSHRAAAMAKKALVEG 202
           P    +++FS   AA  A     EG
Sbjct: 187 PSGKGIVEFSGKPAARKALDRCSEG 211


>gi|34932414 non-POU domain containing, octamer-binding isoform 1
           [Homo sapiens]
          Length = 471

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 7/145 (4%)

Query: 58  SEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIAT 117
           S +F+G LP D+ E ++  LF++ G+  E      F   ++GF + R  +R  A+ A   
Sbjct: 74  SRLFVGNLPPDITEEEMRKLFEKYGKAGE-----VFIHKDKGFGFIRLETRTLAEIAKVE 128

Query: 118 LHNHPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPA 177
           L N PLR    L V  +     L+V  LP  ++   L  A    G  ++ A ++      
Sbjct: 129 LDNMPLRGK-QLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQ-VERAVVIVDDRGR 186

Query: 178 PGQIALLKFSSHRAAAMAKKALVEG 202
           P    +++FS   AA  A     EG
Sbjct: 187 PSGKGIVEFSGKPAARKALDRCSEG 211


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 7/143 (4%)

Query: 60  VFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIATLH 119
           +F+G LP D+ E +   LF + G   E      F    +GF + +  SR  A+ A A L 
Sbjct: 299 LFVGNLPADITEDEFKRLFAKYGEPGE-----VFINKGKGFGFIKLESRALAEIAKAELD 353

Query: 120 NHPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPG 179
           + P+R    L V  +T    LSV  L P ++   L  A    GP  +   ++   G + G
Sbjct: 354 DTPMR-GRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTG 412

Query: 180 QIALLKFSSHRAAAMAKKALVEG 202
           +  +++F+S  AA  A +   EG
Sbjct: 413 K-GIVEFASKPAARKAFERCSEG 434


>gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4
           [Homo sapiens]
          Length = 488

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 45/192 (23%), Positives = 86/192 (44%), Gaps = 17/192 (8%)

Query: 53  PPPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFS---GLNRGFAYARYSSRR 109
           P P   ++F+G++P+   E +L  LF+  G +Y+  ++   S     ++G  +  + +R+
Sbjct: 11  PDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRK 70

Query: 110 GAQAAIATLHN--------HPLR-PSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQP 160
            A  A   LHN        HP++          + E  +L +  +      + + +   P
Sbjct: 71  AALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSP 130

Query: 161 LGPGLQEARLLPSPGPAPGQIALLKFSSHRAAAMAKKALVEGQS-HLCGEQVAVEWL--- 216
            G  ++E R+L  P       A + FS+   A  A KA+ + Q+   C   + V++    
Sbjct: 131 FGQ-IEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQ 189

Query: 217 KPDLKQRLRQQL 228
           K   ++RL+QQL
Sbjct: 190 KDKEQRRLQQQL 201



 Score = 33.9 bits (76), Expect = 0.23
 Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 55  PAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQA 113
           P G+ +FI  LPQ+  +  ++ +F   G +   ++ +   + L++ F +  Y +   AQA
Sbjct: 400 PEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 459

Query: 114 AIATLH 119
           AI  ++
Sbjct: 460 AIQAMN 465


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.138    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,092,482
Number of Sequences: 37866
Number of extensions: 852139
Number of successful extensions: 3024
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 2820
Number of HSP's gapped (non-prelim): 228
length of query: 353
length of database: 18,247,518
effective HSP length: 103
effective length of query: 250
effective length of database: 14,347,320
effective search space: 3586830000
effective search space used: 3586830000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.