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Search of human proteins with 34365783
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|34365783 visual system homeobox 2 [Homo sapiens]
(361 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34365783 visual system homeobox 2 [Homo sapiens] 719 0.0
gi|11056038 visual system homeobox 1 isoform a [Homo sapiens] 236 2e-62
gi|40806216 visual system homeobox 1 isoform b [Homo sapiens] 116 4e-26
gi|55743092 aristaless-like homeobox 4 [Homo sapiens] 115 6e-26
gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens] 109 4e-24
gi|113204604 aristaless-like homeobox 3 [Homo sapiens] 107 2e-23
gi|24497589 aristaless related homeobox [Homo sapiens] 106 3e-23
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 102 7e-22
gi|14249388 retina and anterior neural fold homeobox 2 [Homo sap... 100 2e-21
gi|122937321 UNC homeobox [Homo sapiens] 99 6e-21
gi|12707580 paired-like homeobox 2b [Homo sapiens] 97 2e-20
gi|189083681 paired box gene 6 isoform a [Homo sapiens] 97 3e-20
gi|4580424 paired box gene 6 isoform b [Homo sapiens] 97 3e-20
gi|4505615 paired box gene 6 isoform a [Homo sapiens] 97 3e-20
gi|122937484 dorsal root ganglia homeobox [Homo sapiens] 95 1e-19
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 94 1e-19
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 94 1e-19
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 94 1e-19
gi|46249382 paired-like homeobox 2a [Homo sapiens] 94 2e-19
gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens] 93 3e-19
gi|14149760 orthopedia homeobox [Homo sapiens] 93 3e-19
gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Hom... 92 5e-19
gi|27436936 diencephalon/mesencephalon homeobox 1 isoform a [Hom... 92 5e-19
gi|27777663 goosecoid [Homo sapiens] 92 7e-19
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 92 9e-19
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 92 9e-19
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 92 9e-19
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 92 9e-19
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 92 9e-19
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 92 9e-19
>gi|34365783 visual system homeobox 2 [Homo sapiens]
Length = 361
Score = 719 bits (1856), Expect = 0.0
Identities = 361/361 (100%), Positives = 361/361 (100%)
Query: 1 MTGKAGEALSKPKSETVAKSTSGGAPARCTGFGIQEILGLNKEPPSSHPRAALDGLAPGH 60
MTGKAGEALSKPKSETVAKSTSGGAPARCTGFGIQEILGLNKEPPSSHPRAALDGLAPGH
Sbjct: 1 MTGKAGEALSKPKSETVAKSTSGGAPARCTGFGIQEILGLNKEPPSSHPRAALDGLAPGH 60
Query: 61 LLAARSVLSPAGVGGMGLLGPGGLPGFYTQPTFLEVLSDPQSVHLQPLGRASGPLDTSQT 120
LLAARSVLSPAGVGGMGLLGPGGLPGFYTQPTFLEVLSDPQSVHLQPLGRASGPLDTSQT
Sbjct: 61 LLAARSVLSPAGVGGMGLLGPGGLPGFYTQPTFLEVLSDPQSVHLQPLGRASGPLDTSQT 120
Query: 121 ASSDSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREM 180
ASSDSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREM
Sbjct: 121 ASSDSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREM 180
Query: 181 LAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVMAEYGLYGAMVRHSIPLPESILKSA 240
LAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVMAEYGLYGAMVRHSIPLPESILKSA
Sbjct: 181 LAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVMAEYGLYGAMVRHSIPLPESILKSA 240
Query: 241 KDGIMDSCAPWLLGMHKKSLEAAAESGRKPEGERQALPKLDKMEQDERGPDAQAAISQEE 300
KDGIMDSCAPWLLGMHKKSLEAAAESGRKPEGERQALPKLDKMEQDERGPDAQAAISQEE
Sbjct: 241 KDGIMDSCAPWLLGMHKKSLEAAAESGRKPEGERQALPKLDKMEQDERGPDAQAAISQEE 300
Query: 301 LRENSIAVLRAKAQEHSTKVLGTVSGPDSLARSTEKPEEEEAMDEDRPAERLSPPQLEDM 360
LRENSIAVLRAKAQEHSTKVLGTVSGPDSLARSTEKPEEEEAMDEDRPAERLSPPQLEDM
Sbjct: 301 LRENSIAVLRAKAQEHSTKVLGTVSGPDSLARSTEKPEEEEAMDEDRPAERLSPPQLEDM 360
Query: 361 A 361
A
Sbjct: 361 A 361
>gi|11056038 visual system homeobox 1 isoform a [Homo sapiens]
Length = 365
Score = 236 bits (602), Expect = 2e-62
Identities = 166/372 (44%), Positives = 208/372 (55%), Gaps = 48/372 (12%)
Query: 1 MTGKAGEALSKPKSETVAKSTSGGAP--ARCTGFGIQEILGLNKEPPSSHPRAALDGLAP 58
MTG+ ++LS ++ + A GG+P +R GF I ++LGL E P+ A G
Sbjct: 1 MTGR--DSLSDGRTSSRAL-VPGGSPRGSRPRGFAITDLLGLEAELPAP----AGPGQGS 53
Query: 59 GHLLAARSVLSPAGVGGMGL------LGPGGLPGFYTQPT--------------FLEVLS 98
G A + G+ G L LG G L GF TQP FL
Sbjct: 54 GCEGPAVAPCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRG 113
Query: 99 DPQSVHLQPLGR--ASGPLDTSQTASSDSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFT 156
+ L P A G S + S+ ED S DR K++ KRKKRRHRT+FT
Sbjct: 114 PEPAAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPT-LGKRKKRRHRTVFT 172
Query: 157 SYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVM 216
++QLEELEKAF+EAHYPDVYAREMLA+KTELPEDRIQVWFQNRRAKWRKREK WG SSVM
Sbjct: 173 AHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVM 232
Query: 217 AEYGLYGAMVRHSIPLPESILKSAKDGIMDSCAPWLLGMHKKSLEAAAESGRKPEGERQA 276
AEYGLYGAMVRH IPLP+S+L SA+ G++ SCAPWLLGMHKKS+ + G E +
Sbjct: 233 AEYGLYGAMVRHCIPLPDSVLNSAEGGLLGSCAPWLLGMHKKSMGMIRKPG--SEDKLAG 290
Query: 277 LPKLDKMEQ--------DERGPDAQAAISQEELRENSIAVLRAKAQEHSTKV---LGTVS 325
L D ++ +RG D +S E E+ L + A++ + KV G
Sbjct: 291 LWGSDHFKEGSSQSESGSQRGSD---KVSPENGLEDVAIDLSSSARQETKKVHPGAGAQG 347
Query: 326 GPDSLARSTEKP 337
G +S A +P
Sbjct: 348 GSNSTALEGPQP 359
>gi|40806216 visual system homeobox 1 isoform b [Homo sapiens]
Length = 239
Score = 116 bits (290), Expect = 4e-26
Identities = 93/218 (42%), Positives = 116/218 (53%), Gaps = 32/218 (14%)
Query: 1 MTGKAGEALSKPKSETVAKSTSGGAP--ARCTGFGIQEILGLNKEPPSSHPRAALDGLAP 58
MTG+ ++LS ++ + A GG+P +R GF I ++LGL E P+ A G
Sbjct: 1 MTGR--DSLSDGRTSSRAL-VPGGSPRGSRPRGFAITDLLGLEAELPAP----AGPGQGS 53
Query: 59 GHLLAARSVLSPAGVGGMGL------LGPGGLPGFYTQPT--------------FLEVLS 98
G A + G+ G L LG G L GF TQP FL
Sbjct: 54 GCEGPAVAPCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRG 113
Query: 99 DPQSVHLQPLGR--ASGPLDTSQTASSDSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFT 156
+ L P A G S + S+ ED S DR K++ KRKKRRHRT+FT
Sbjct: 114 PEPAAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPT-LGKRKKRRHRTVFT 172
Query: 157 SYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQV 194
++QLEELEKAF+EAHYPDVYAREMLA+KTELPEDRIQV
Sbjct: 173 AHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQV 210
>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
Length = 411
Score = 115 bits (288), Expect = 6e-26
Identities = 58/102 (56%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 108 LGRASGPLDTSQTASSDSEDVSSSDRKMS-KSALNQTKKRKKRRHRTIFTSYQLEELEKA 166
+G S L + +D +SSD + A +++ K KKRR+RT FTSYQLEELEK
Sbjct: 173 VGMDSSYLSVKEAGVKGPQDRASSDLPSPLEKADSESNKGKKRRNRTTFTSYQLEELEKV 232
Query: 167 FNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREK 208
F + HYPDVYARE LAM+T+L E R+QVWFQNRRAKWRKRE+
Sbjct: 233 FQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 274
>gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]
Length = 326
Score = 109 bits (272), Expect = 4e-24
Identities = 73/195 (37%), Positives = 99/195 (50%), Gaps = 24/195 (12%)
Query: 147 KKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKR 206
KKRRHRT FTS QLEELEK F + HYPDVY RE LA++TEL E R+QVWFQNRRAKWRKR
Sbjct: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190
Query: 207 EKC----WGRSSVMAEYGLYGAMVRHSIPLPESIL---KSAKDGIMDSC----------A 249
E+ +S A Y + S P ++ L ++ ++ SC
Sbjct: 191 ERYGQIQQAKSHFAATYDISVLPRTDSYPQIQNNLWAGNASGGSVVTSCMLPRDTSSCMT 250
Query: 250 PWLLGMHKKSLEAAAESGRKPEGERQALPK----LDKMEQDERGPDAQAAISQEELRENS 305
P+ H +++ + + +P D + A + E R +S
Sbjct: 251 PY---SHSPRTDSSYTGFSNHQNQFSHVPLNNFFTDSLLTGATNGHAFETKPEFERRSSS 307
Query: 306 IAVLRAKAQEHSTKV 320
IAVLR KA+EH+ +
Sbjct: 308 IAVLRMKAKEHTANI 322
>gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
Length = 343
Score = 107 bits (266), Expect = 2e-23
Identities = 70/156 (44%), Positives = 89/156 (57%), Gaps = 13/156 (8%)
Query: 79 LGPG-GLPG--FYTQPTFLEVLSDPQSVHLQ-PLGRASGPLD-TSQTASSDSEDVSSSDR 133
LGPG L G FY P E + + Q PL GP D S S ++S
Sbjct: 75 LGPGPALNGGHFYEGPAEAEEKTSKAASFPQLPLDCRGGPRDGPSNLQGSPGPCLASLHL 134
Query: 134 KMSKSALNQTK----KRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPE 189
+S + + K KKRR+RT F+++QLEELEK F + HYPDVYARE LA++T+L E
Sbjct: 135 PLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTE 194
Query: 190 DRIQVWFQNRRAKWRKREKCW----GRSSVMAEYGL 221
R+QVWFQNRRAKWRKRE+ GR+ A Y +
Sbjct: 195 ARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDI 230
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 106 bits (265), Expect = 3e-23
Identities = 48/64 (75%), Positives = 56/64 (87%)
Query: 145 KRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWR 204
KRK+RR+RT FTSYQLEELE+AF + HYPDV+ RE LAM+ +L E R+QVWFQNRRAKWR
Sbjct: 325 KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWR 384
Query: 205 KREK 208
KREK
Sbjct: 385 KREK 388
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 102 bits (253), Expect = 7e-22
Identities = 46/73 (63%), Positives = 59/73 (80%)
Query: 136 SKSALNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVW 195
+K + + K+K RR+RT FT+YQL ELE+AF ++HYPDVY+RE LA K LPE R+QVW
Sbjct: 124 AKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVW 183
Query: 196 FQNRRAKWRKREK 208
FQNRRAKWR++EK
Sbjct: 184 FQNRRAKWRRQEK 196
>gi|14249388 retina and anterior neural fold homeobox 2 [Homo
sapiens]
Length = 184
Score = 100 bits (249), Expect = 2e-21
Identities = 45/76 (59%), Positives = 58/76 (76%)
Query: 142 QTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRA 201
+ K+K RR+RT FT+YQL +LE+AF +HYPDVY+RE LA K LPE R+QVWFQNRRA
Sbjct: 21 EAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRA 80
Query: 202 KWRKREKCWGRSSVMA 217
KWR++E+ S +A
Sbjct: 81 KWRRQERLESGSGAVA 96
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 99.0 bits (245), Expect = 6e-21
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 147 KKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKR 206
K+RR RT FT +QLEELEKAFNE+HYPDV+ RE LA++ +L E R+QVWFQNRRAKWRK+
Sbjct: 104 KRRRTRTNFTGWQLEELEKAFNESHYPDVFMREALALRLDLVESRVQVWFQNRRAKWRKK 163
Query: 207 E 207
E
Sbjct: 164 E 164
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 97.1 bits (240), Expect = 2e-20
Identities = 46/80 (57%), Positives = 60/80 (75%)
Query: 144 KKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKW 203
+KRK+RR RT FTS QL+ELE+ F E HYPD+Y RE LA+K +L E R+QVWFQNRRAK+
Sbjct: 94 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKF 153
Query: 204 RKREKCWGRSSVMAEYGLYG 223
RK+E+ ++ A+ G G
Sbjct: 154 RKQERAAAAAAAAAKNGSSG 173
>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 96.7 bits (239), Expect = 3e-20
Identities = 45/85 (52%), Positives = 58/85 (68%)
Query: 124 DSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAM 183
++ +SS+ ++ + KRK +R+RT FT Q+E LEK F HYPDV+ARE LA
Sbjct: 186 NTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAA 245
Query: 184 KTELPEDRIQVWFQNRRAKWRKREK 208
K +LPE RIQVWF NRRAKWR+ EK
Sbjct: 246 KIDLPEARIQVWFSNRRAKWRREEK 270
>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
Length = 436
Score = 96.7 bits (239), Expect = 3e-20
Identities = 45/85 (52%), Positives = 58/85 (68%)
Query: 124 DSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAM 183
++ +SS+ ++ + KRK +R+RT FT Q+E LEK F HYPDV+ARE LA
Sbjct: 200 NTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAA 259
Query: 184 KTELPEDRIQVWFQNRRAKWRKREK 208
K +LPE RIQVWF NRRAKWR+ EK
Sbjct: 260 KIDLPEARIQVWFSNRRAKWRREEK 284
>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 96.7 bits (239), Expect = 3e-20
Identities = 45/85 (52%), Positives = 58/85 (68%)
Query: 124 DSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAM 183
++ +SS+ ++ + KRK +R+RT FT Q+E LEK F HYPDV+ARE LA
Sbjct: 186 NTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAA 245
Query: 184 KTELPEDRIQVWFQNRRAKWRKREK 208
K +LPE RIQVWF NRRAKWR+ EK
Sbjct: 246 KIDLPEARIQVWFSNRRAKWRREEK 270
>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
Length = 268
Score = 94.7 bits (234), Expect = 1e-19
Identities = 78/226 (34%), Positives = 99/226 (43%), Gaps = 36/226 (15%)
Query: 145 KRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWR 204
+RK+RR+RT FT QLE LE F + HYPDV+ RE LAMK L E R+QVWFQNRRAKWR
Sbjct: 35 RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWR 94
Query: 205 KREKCW-----GRSSVMAEYGLYGAMVRH-SIPLPESILKSAKDGI-------------- 244
K E+ G MAE + VR+ + P P +S K+ +
Sbjct: 95 KTERGASDQEPGAKEPMAE--VTPPPVRNINSPPPGDQARSKKEALEAQQSLGRTVGPAG 152
Query: 245 --MDSCAPWLLGMHKKSLEAAAESGRKPEGERQALPKLDKMEQDERGPDAQAAISQEELR 302
SC P L +A + G P D G + R
Sbjct: 153 PFFPSCLPGTLLNTATYAQALSHVASLKGG-----PLCSCCVPDPMGLSFLPTYGCQSNR 207
Query: 303 ENSIAVLRAKAQEHSTKVL-------GTVSGPDSLARSTEKPEEEE 341
S+A LR KA+EHS VL T S P +A+ +E
Sbjct: 208 TASVATLRMKAREHSEAVLQSANLLPSTSSSPGPVAKPAPPDGSQE 253
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 94.4 bits (233), Expect = 1e-19
Identities = 42/62 (67%), Positives = 50/62 (80%)
Query: 145 KRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWR 204
KRK+RR RT FT+ QLEELEKAF HYPD+Y RE LA +T+L E R+QVWF NRRA+WR
Sbjct: 214 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWR 273
Query: 205 KR 206
K+
Sbjct: 274 KQ 275
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 94.4 bits (233), Expect = 1e-19
Identities = 42/62 (67%), Positives = 50/62 (80%)
Query: 145 KRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWR 204
KRK+RR RT FT+ QLEELEKAF HYPD+Y RE LA +T+L E R+QVWF NRRA+WR
Sbjct: 212 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWR 271
Query: 205 KR 206
K+
Sbjct: 272 KQ 273
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 94.4 bits (233), Expect = 1e-19
Identities = 42/62 (67%), Positives = 50/62 (80%)
Query: 145 KRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWR 204
KRK+RR RT FT+ QLEELEKAF HYPD+Y RE LA +T+L E R+QVWF NRRA+WR
Sbjct: 214 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWR 273
Query: 205 KR 206
K+
Sbjct: 274 KQ 275
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 94.0 bits (232), Expect = 2e-19
Identities = 43/65 (66%), Positives = 54/65 (83%)
Query: 144 KKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKW 203
+KRK+RR RT FTS QL+ELE+ F E HYPD+Y RE LA+K +L E R+QVWFQNRRAK+
Sbjct: 86 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKF 145
Query: 204 RKREK 208
RK+E+
Sbjct: 146 RKQER 150
>gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]
Length = 325
Score = 93.2 bits (230), Expect = 3e-19
Identities = 62/155 (40%), Positives = 81/155 (52%), Gaps = 17/155 (10%)
Query: 59 GHLLAARSVLSPAGVGGMGLLGPGGLPGFYTQPTFLEVLSDP-QSVHLQP----LGRASG 113
GH A + L GVGG PGG PG L SDP + L P S
Sbjct: 22 GHREAVKCRL---GVGGSD---PGGHPGD------LAPNSDPVEGATLLPGEDITTVGST 69
Query: 114 PLDTSQTASSDSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYP 173
P + +A + A Q ++K++RHRT FT QL ELE++F + HYP
Sbjct: 70 PASLAVSAKDPDKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYP 129
Query: 174 DVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREK 208
D++ RE LA++ L E R+QVWFQNRRAKW+KR+K
Sbjct: 130 DIFMREELALRIGLTESRVQVWFQNRRAKWKKRKK 164
>gi|14149760 orthopedia homeobox [Homo sapiens]
Length = 325
Score = 93.2 bits (230), Expect = 3e-19
Identities = 62/155 (40%), Positives = 81/155 (52%), Gaps = 17/155 (10%)
Query: 59 GHLLAARSVLSPAGVGGMGLLGPGGLPGFYTQPTFLEVLSDP-QSVHLQP----LGRASG 113
GH A + L GVGG PGG PG L SDP + L P S
Sbjct: 22 GHREAVKCRL---GVGGSD---PGGHPGD------LAPNSDPVEGATLLPGEDITTVGST 69
Query: 114 PLDTSQTASSDSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYP 173
P + +A + A Q ++K++RHRT FT QL ELE++F + HYP
Sbjct: 70 PASLAVSAKDPDKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYP 129
Query: 174 DVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREK 208
D++ RE LA++ L E R+QVWFQNRRAKW+KR+K
Sbjct: 130 DIFMREELALRIGLTESRVQVWFQNRRAKWKKRKK 164
>gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Homo
sapiens]
Length = 382
Score = 92.4 bits (228), Expect = 5e-19
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 3/155 (1%)
Query: 143 TKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAK 202
++ RK+RR RT FT+ QLE LEK F + HYPDV RE LAM T LPE R+QVWF+NRRAK
Sbjct: 66 SQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAK 125
Query: 203 WRKREKCWGRSSVMAEYGLYGA--MVRHSIPLPESILKSAKDGIMDSCAPWLLGMHKKSL 260
+RK+++ + + + G+ + P P++ L + + + P S
Sbjct: 126 FRKKQRSLQKEQLQKQKEAEGSHGEGKAEAPTPDTQLDTEQPPRLPGSDPPAELHLSLSE 185
Query: 261 EAAAESGRKPEGERQALPKLDKME-QDERGPDAQA 294
++A+ES + + +R+ P+ + + E+ P A +
Sbjct: 186 QSASESAPEDQPDREEDPRAGAEDPKAEKSPGADS 220
>gi|27436936 diencephalon/mesencephalon homeobox 1 isoform a [Homo
sapiens]
Length = 377
Score = 92.4 bits (228), Expect = 5e-19
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 3/155 (1%)
Query: 143 TKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAK 202
++ RK+RR RT FT+ QLE LEK F + HYPDV RE LAM T LPE R+QVWF+NRRAK
Sbjct: 61 SQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAK 120
Query: 203 WRKREKCWGRSSVMAEYGLYGA--MVRHSIPLPESILKSAKDGIMDSCAPWLLGMHKKSL 260
+RK+++ + + + G+ + P P++ L + + + P S
Sbjct: 121 FRKKQRSLQKEQLQKQKEAEGSHGEGKAEAPTPDTQLDTEQPPRLPGSDPPAELHLSLSE 180
Query: 261 EAAAESGRKPEGERQALPKLDKME-QDERGPDAQA 294
++A+ES + + +R+ P+ + + E+ P A +
Sbjct: 181 QSASESAPEDQPDREEDPRAGAEDPKAEKSPGADS 215
>gi|27777663 goosecoid [Homo sapiens]
Length = 257
Score = 92.0 bits (227), Expect = 7e-19
Identities = 44/79 (55%), Positives = 54/79 (68%)
Query: 140 LNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNR 199
LNQ R+KRRHRTIFT QLE LE F E YPDV RE LA K L E++++VWF+NR
Sbjct: 152 LNQLHCRRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNR 211
Query: 200 RAKWRKREKCWGRSSVMAE 218
RAKWR++++ S AE
Sbjct: 212 RAKWRRQKRSSSEESENAE 230
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 91.7 bits (226), Expect = 9e-19
Identities = 43/73 (58%), Positives = 54/73 (73%), Gaps = 3/73 (4%)
Query: 145 KRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWR 204
KRK+RR RT FT+ QLEELE+AF HYPD+Y RE LA + +L E R+QVWF NRRA+WR
Sbjct: 215 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 274
Query: 205 KREKCWGRSSVMA 217
K+ G + +MA
Sbjct: 275 KQA---GANQLMA 284
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 91.7 bits (226), Expect = 9e-19
Identities = 43/73 (58%), Positives = 54/73 (73%), Gaps = 3/73 (4%)
Query: 145 KRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWR 204
KRK+RR RT FT+ QLEELE+AF HYPD+Y RE LA + +L E R+QVWF NRRA+WR
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275
Query: 205 KREKCWGRSSVMA 217
K+ G + +MA
Sbjct: 276 KQA---GANQLMA 285
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 91.7 bits (226), Expect = 9e-19
Identities = 43/73 (58%), Positives = 54/73 (73%), Gaps = 3/73 (4%)
Query: 145 KRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWR 204
KRK+RR RT FT+ QLEELE+AF HYPD+Y RE LA + +L E R+QVWF NRRA+WR
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275
Query: 205 KREKCWGRSSVMA 217
K+ G + +MA
Sbjct: 276 KQA---GANQLMA 285
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 91.7 bits (226), Expect = 9e-19
Identities = 43/73 (58%), Positives = 54/73 (73%), Gaps = 3/73 (4%)
Query: 145 KRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWR 204
KRK+RR RT FT+ QLEELE+AF HYPD+Y RE LA + +L E R+QVWF NRRA+WR
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275
Query: 205 KREKCWGRSSVMA 217
K+ G + +MA
Sbjct: 276 KQA---GANQLMA 285
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 91.7 bits (226), Expect = 9e-19
Identities = 43/73 (58%), Positives = 54/73 (73%), Gaps = 3/73 (4%)
Query: 145 KRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWR 204
KRK+RR RT FT+ QLEELE+AF HYPD+Y RE LA + +L E R+QVWF NRRA+WR
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275
Query: 205 KREKCWGRSSVMA 217
K+ G + +MA
Sbjct: 276 KQA---GANQLMA 285
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 91.7 bits (226), Expect = 9e-19
Identities = 43/73 (58%), Positives = 54/73 (73%), Gaps = 3/73 (4%)
Query: 145 KRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWR 204
KRK+RR RT FT+ QLEELE+AF HYPD+Y RE LA + +L E R+QVWF NRRA+WR
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275
Query: 205 KREKCWGRSSVMA 217
K+ G + +MA
Sbjct: 276 KQA---GANQLMA 285
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.128 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,385,152
Number of Sequences: 37866
Number of extensions: 767110
Number of successful extensions: 4371
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 3860
Number of HSP's gapped (non-prelim): 573
length of query: 361
length of database: 18,247,518
effective HSP length: 104
effective length of query: 257
effective length of database: 14,309,454
effective search space: 3677529678
effective search space used: 3677529678
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.