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Search of human proteins with 34147676
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|34147676 MTERF domain containing 1 [Homo sapiens]
(417 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34147676 MTERF domain containing 1 [Homo sapiens] 820 0.0
gi|42740903 MTERF domain containing 2 [Homo sapiens] 63 4e-10
gi|5902010 mitochondrial transcription termination factor precur... 43 5e-04
gi|50658061 TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member... 35 0.097
gi|74271828 transcription termination factor-like protein [Homo ... 34 0.22
gi|21314736 transcription termination factor-like protein [Homo ... 34 0.22
gi|37588869 ring finger protein 123 [Homo sapiens] 34 0.28
gi|116256475 zinc finger protein 827 [Homo sapiens] 33 0.63
gi|57242793 interphotoreceptor matrix proteoglycan 2 [Homo sapiens] 32 0.82
gi|124001558 ubiquitin specific peptidase 54 [Homo sapiens] 32 1.1
gi|148746189 multiple PDZ domain protein [Homo sapiens] 32 1.4
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 32 1.4
gi|126362971 serine/threonine kinase 10 [Homo sapiens] 31 1.8
gi|156104874 envoplakin [Homo sapiens] 31 1.8
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 31 1.8
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 31 2.4
gi|57863275 vacuolar protein sorting 8 homolog isoform b [Homo s... 31 2.4
gi|57863277 vacuolar protein sorting 8 homolog isoform a [Homo s... 31 2.4
gi|149393138 hypothetical protein LOC84067 isoform 2 [Homo sapiens] 31 2.4
gi|149393140 hypothetical protein LOC84067 isoform 1 [Homo sapiens] 31 2.4
gi|169168964 PREDICTED: hypothetical protein LOC100131031 [Homo ... 30 4.1
gi|169168628 PREDICTED: hypothetical protein LOC100131031 [Homo ... 30 4.1
gi|169169551 PREDICTED: hypothetical protein LOC100131031 [Homo ... 30 4.1
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 30 4.1
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 30 4.1
gi|195976782 Paf1/RNA polymerase II complex component [Homo sapi... 30 4.1
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 30 4.1
gi|38201644 homeodomain-interacting protein kinase 1 isoform 4 [... 30 4.1
gi|38201642 homeodomain-interacting protein kinase 1 isoform 3 [... 30 4.1
gi|38201640 homeodomain-interacting protein kinase 1 isoform 1 [... 30 4.1
>gi|34147676 MTERF domain containing 1 [Homo sapiens]
Length = 417
Score = 820 bits (2118), Expect = 0.0
Identities = 417/417 (100%), Positives = 417/417 (100%)
Query: 1 MALSAQQIPRWFNSVKLRSLINAAQLTKRFTRPARTLLHGFSAQPQISSDNCFLQWGFKT 60
MALSAQQIPRWFNSVKLRSLINAAQLTKRFTRPARTLLHGFSAQPQISSDNCFLQWGFKT
Sbjct: 1 MALSAQQIPRWFNSVKLRSLINAAQLTKRFTRPARTLLHGFSAQPQISSDNCFLQWGFKT 60
Query: 61 YRTSSLWNSSQSTSSSSQENNSAQSSLLPSMNEQSQKTQNISSFDSELFLEELDELPPLS 120
YRTSSLWNSSQSTSSSSQENNSAQSSLLPSMNEQSQKTQNISSFDSELFLEELDELPPLS
Sbjct: 61 YRTSSLWNSSQSTSSSSQENNSAQSSLLPSMNEQSQKTQNISSFDSELFLEELDELPPLS 120
Query: 121 PMQPISEEEAIQIIADPPLPPASFTLRDYVDHSETLQKLVLLGVDLSKIEKHPEAANLLL 180
PMQPISEEEAIQIIADPPLPPASFTLRDYVDHSETLQKLVLLGVDLSKIEKHPEAANLLL
Sbjct: 121 PMQPISEEEAIQIIADPPLPPASFTLRDYVDHSETLQKLVLLGVDLSKIEKHPEAANLLL 180
Query: 181 RLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADV 240
RLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADV
Sbjct: 181 RLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADV 240
Query: 241 AQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKV 300
AQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKV
Sbjct: 241 AQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKV 300
Query: 301 YRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF 360
YRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF
Sbjct: 301 YRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF 360
Query: 361 KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQDFEKFLKTL 417
KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQDFEKFLKTL
Sbjct: 361 KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQDFEKFLKTL 417
>gi|42740903 MTERF domain containing 2 [Homo sapiens]
Length = 381
Score = 63.2 bits (152), Expect = 4e-10
Identities = 52/236 (22%), Positives = 109/236 (46%), Gaps = 11/236 (4%)
Query: 187 DIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRK 246
++++++ L D+G + + L+ + L ++ + L + V +++K
Sbjct: 91 ELERVMSSLLDMGFSNAHINELLSVRRGASLQQLLDIISEFILL---GLNPEPVCVVLKK 147
Query: 247 APFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELG 306
+P LL + ++ R + QK L L K + ++ P + T + + + +++ + +
Sbjct: 148 SPQLLKLPIMQMRKRSSYLQK-LGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEKCL 206
Query: 307 FKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFKVKERH 366
F ++ ++ P +L + +L F + + M I H IVK + L K+K+RH
Sbjct: 207 FTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLTKIKQRH 265
Query: 367 LFLTYLGRAQYDPAK-----PNYISLDKLVSIPDEIFCEEIAKASVQDFEKFLKTL 417
++L LGR Q K PN + L ++ + + F A SV++F+ F K L
Sbjct: 266 IYLERLGRYQTPDKKGQTQIPNPL-LKDILRVSEAEFLARTACTSVEEFQVFKKLL 320
>gi|5902010 mitochondrial transcription termination factor precursor
[Homo sapiens]
Length = 399
Score = 43.1 bits (100), Expect = 5e-04
Identities = 51/221 (23%), Positives = 93/221 (42%), Gaps = 17/221 (7%)
Query: 157 QKLVLLGVDLSKI-EKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAI 215
+K+V +++ I E+ PE+ R + +++ + FL VG+ L LT
Sbjct: 147 RKIVTSDLEIVNILERSPES---FFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRT 203
Query: 216 FSEDLENLKTRVAYLHSKNFSKA--DVAQMVRKA----PFLLNFSVERLDNRLGFFQKEL 269
FS L+ K V +L + S D A VRK PF+L S +R+ + F +
Sbjct: 204 FSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTF 263
Query: 270 ELSVKKTRDLV----VRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTA 325
L+ ++ L+ + L N+K LG E+Q + P ++
Sbjct: 264 NLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFL 323
Query: 326 NKMKLTETFD-FVHNVMSIPHHIIVKFPQVFNTRLFKVKER 365
+ K + D + +SI I++ P+V ++ + +K R
Sbjct: 324 AEKKFNDKIDCLMEENISISQ--IIENPRVLDSSISTLKSR 362
>gi|50658061 TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1
[Homo sapiens]
Length = 1168
Score = 35.4 bits (80), Expect = 0.097
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 112 ELDELPPLSPMQPISEEEAIQIIADPPLPPASFTLRDYVDHSETLQKLVLLGVDLSKIEK 171
EL ELPP SP++P+ E+ P PP R + E QK +L + L ++EK
Sbjct: 687 ELGELPPRSPLEPVCED-------GPFGPPPEEKKRTSRELRELWQKAILQQILLLRMEK 739
Query: 172 HPE----AANLLLRLDFEKDIKQMLLFLKDV 198
+ + N LL + D +++ LK+V
Sbjct: 740 ENQKLQASENDLLNKRLKLDYEEITPCLKEV 770
>gi|74271828 transcription termination factor-like protein [Homo
sapiens]
Length = 385
Score = 34.3 bits (77), Expect = 0.22
Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 10/140 (7%)
Query: 177 NLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHA-IFSEDLENLKTRVAYLHSKNF 235
N + L+ IK+ L FL++ G ++ L+K +F +++ +++ SKN
Sbjct: 216 NPFILLNSPTAIKETLEFLQEQGFTSFEILQLLSKLKGFLFQLCPRSIQNSISF--SKNA 273
Query: 236 SKA---DVAQMVRKAPFLLNFSVERLDNRL-GFFQKELELSVKKTRDLVVRL-PRLLTGS 290
K D+ Q+V K P LL +SV L+ R+ G ++ + ++ + +V+ L P+++
Sbjct: 274 FKCTDHDLKQLVLKCPALLYYSVPVLEERMQGLLREGISIAQIRETPMVLELTPQIVQYR 333
Query: 291 LEPVKENMKVYRLELGFKHN 310
+ K N YR++ G N
Sbjct: 334 IR--KLNSSGYRIKDGHLAN 351
>gi|21314736 transcription termination factor-like protein [Homo
sapiens]
Length = 385
Score = 34.3 bits (77), Expect = 0.22
Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 10/140 (7%)
Query: 177 NLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHA-IFSEDLENLKTRVAYLHSKNF 235
N + L+ IK+ L FL++ G ++ L+K +F +++ +++ SKN
Sbjct: 216 NPFILLNSPTAIKETLEFLQEQGFTSFEILQLLSKLKGFLFQLCPRSIQNSISF--SKNA 273
Query: 236 SKA---DVAQMVRKAPFLLNFSVERLDNRL-GFFQKELELSVKKTRDLVVRL-PRLLTGS 290
K D+ Q+V K P LL +SV L+ R+ G ++ + ++ + +V+ L P+++
Sbjct: 274 FKCTDHDLKQLVLKCPALLYYSVPVLEERMQGLLREGISIAQIRETPMVLELTPQIVQYR 333
Query: 291 LEPVKENMKVYRLELGFKHN 310
+ K N YR++ G N
Sbjct: 334 IR--KLNSSGYRIKDGHLAN 351
>gi|37588869 ring finger protein 123 [Homo sapiens]
Length = 1314
Score = 33.9 bits (76), Expect = 0.28
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 22/121 (18%)
Query: 117 PPLSPMQPISEEEAIQIIADPPLPPASFTLRDYVDHSETLQKLVLLGVDLSKIEKHPEAA 176
PP P QP++E ++++ + + + H + L K+V + D+++
Sbjct: 734 PPEEPEQPLTENSLLEVL------DGAVMMYNLSVHQQ-LGKMVGVSDDVNEYA------ 780
Query: 177 NLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFS 236
+ LR D E +++ KD+ E LTK+ +FSE L++L R+A++H+ +S
Sbjct: 781 -MALR-DTEDKLRRCPKRRKDILAE-------LTKSQKVFSEKLDHLSRRLAWVHATVYS 831
Query: 237 K 237
+
Sbjct: 832 Q 832
>gi|116256475 zinc finger protein 827 [Homo sapiens]
Length = 1077
Score = 32.7 bits (73), Expect = 0.63
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 7/128 (5%)
Query: 15 VKLRSLINAAQLTKRFTRPARTLLHGFSAQPQISSDNCFLQWGFKTYRTSSLWNSSQSTS 74
+KL++ NA K TR T+ + P S Q T S S +S +
Sbjct: 213 LKLKAAANAVLQDKSLTRTEETMRFESFSSPFSS------QSASSTLAALSKKVSERSLT 266
Query: 75 SSSQENNSAQSSL-LPSMNEQSQKTQNISSFDSELFLEELDELPPLSPMQPISEEEAIQI 133
+ A S L L SM + + +++ + L E L P P+ P E+ +
Sbjct: 267 PGQEHPPPASSFLSLASMTSSAALLKEVAARAAGSLLAEKSSLLPEDPLPPPPSEKKPEK 326
Query: 134 IADPPLPP 141
+ PP PP
Sbjct: 327 VTPPPPPP 334
>gi|57242793 interphotoreceptor matrix proteoglycan 2 [Homo sapiens]
Length = 1241
Score = 32.3 bits (72), Expect = 0.82
Identities = 36/137 (26%), Positives = 54/137 (39%), Gaps = 18/137 (13%)
Query: 67 WNSSQSTSSSSQENNSA-----QSSLLPSMNEQSQ-----KTQNISSFDSELFLEELDEL 116
W S+++S S E S SLLP+ E + K + E D
Sbjct: 614 WPWSETSSEKSAEPLSKPWLEDDDSLLPAEIEDKKLVLVDKMDSTDQISKHSKYEHDDRS 673
Query: 117 PPLSPMQPISEEEAIQIIADPPLPPASFTLRDYV-------DHSETLQKLVLLGVDLSKI 169
+P+S A+ I AD AS TL ++ D+S T L+L V +S
Sbjct: 674 THFPEEEPLSGP-AVPIFADTAAESASLTLPKHISEVPGVDDYSVTKAPLILTSVAISAS 732
Query: 170 EKHPEAANLLLRLDFEK 186
+ A+ +LR D E+
Sbjct: 733 TDKSDQADAILREDMEQ 749
>gi|124001558 ubiquitin specific peptidase 54 [Homo sapiens]
Length = 1684
Score = 32.0 bits (71), Expect = 1.1
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 59 KTYRTSSLWNSSQSTSSSSQENNSAQSSLLPSMNEQSQKTQNISSFDSELFLEELDELPP 118
K RT L + S+S E+ S+ SS +++ NI S +F ++ +
Sbjct: 543 KPPRTLPLHSRDWEIESTSSESKSSSSSKYRPTWRPKRESLNIDS----IFSKDKRKHCG 598
Query: 119 LSPMQPISEEEAIQIIADPPLPPASFTLR 147
+ + P SE+ A + I D P P S+ ++
Sbjct: 599 YTQLSPFSEDSAKEFIPDEPSKPPSYDIK 627
>gi|148746189 multiple PDZ domain protein [Homo sapiens]
Length = 2041
Score = 31.6 bits (70), Expect = 1.4
Identities = 42/171 (24%), Positives = 66/171 (38%), Gaps = 29/171 (16%)
Query: 81 NSAQSSLLPSMNEQSQKTQNISSFDSELFLEELDELPPLSPMQPISEEEAIQIIADPPLP 140
N + S LPS+ N SS + F + L +P Q SE E + + PP P
Sbjct: 1244 NRPRKSPLPSLLHNLYPKYNFSSTNP--FADSLQINADKAPSQSESEPEKAPLCSVPPPP 1301
Query: 141 PASFTLRDYVDHSETLQKLVLLGVD----------------------LSKIEKHPEAANL 178
P++F DH+++ + VD L IE + L
Sbjct: 1302 PSAFAEMG-SDHTQSSASKISQDVDKEDEFGYSWKNIRERYGTLTGELHMIELEKGHSGL 1360
Query: 179 LLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAY 229
L L KD +M +F+ VGI+ N GA +++L + ++ Y
Sbjct: 1361 GLSLAGNKDRSRMSVFI--VGIDPN--GAAGKDGRLQIADELLEINGQILY 1407
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 31.6 bits (70), Expect = 1.4
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 74 SSSSQENNSAQSSLLPSMNEQSQKTQNISSFDSELFLEELDELPPLSPMQPISEEEAIQI 133
S S ++ QS L P + SF ELF ++ PP +P S++ ++
Sbjct: 1797 SGSDTPSSGIQSPLTPQPGNGNMSPAQ--SFHKELFTKQ----PPSTPTSTSSDDVFVKP 1850
Query: 134 IADPPLP-PASFTLRDYVDHSETLQ 157
A PP P P+ ++D + ++T Q
Sbjct: 1851 QAPPPPPAPSRIPIQDSLSQAQTSQ 1875
>gi|126362971 serine/threonine kinase 10 [Homo sapiens]
Length = 968
Score = 31.2 bits (69), Expect = 1.8
Identities = 57/260 (21%), Positives = 98/260 (37%), Gaps = 48/260 (18%)
Query: 68 NSSQSTSSSSQENNS---------AQSSLLPSMNEQSQKTQNISSFDSELFLEELDELPP 118
N SQ S S +++ A SL P ++ S S E +D
Sbjct: 442 NRSQKASQSRPNSSALETLGGEKLANGSLEPPAQAAPGPSKRDSDCSSLCTSESMDYGTN 501
Query: 119 LSPMQPISEEEAIQIIADPPLPPASFTLRDYVDHSETLQKLVLLGVDLS----KIEKHPE 174
LS +++E I DP L Y + +K V+ GV++S KI E
Sbjct: 502 LSTDLSLNKEMGSLSIKDPKL---------YKKTLKRTRKFVVDGVEVSITTSKIISEDE 552
Query: 175 AANLLLRLDFEKDIKQMLLFLKDVGIEDNQLG---------------AFLTKNHAIFSED 219
+ +R ++++++ L K+ QL + F +
Sbjct: 553 KKDEEMRFLRRQELRELRLLQKEEHRNQTQLSNKHELQLEQMHKRFEQEINAKKKFFDTE 612
Query: 220 LENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDL 279
LENL+ + + K + VR+ +E+ D FQ++L+L K+ ++
Sbjct: 613 LENLERQ----QKQQVEKMEQDHAVRRREEARRIRLEQ-DRDYTRFQEQLKLMKKEVKNE 667
Query: 280 VVRLPRLLTGSLEPVKENMK 299
V +LPR + KE+MK
Sbjct: 668 VEKLPR------QQRKESMK 681
>gi|156104874 envoplakin [Homo sapiens]
Length = 2033
Score = 31.2 bits (69), Expect = 1.8
Identities = 60/265 (22%), Positives = 108/265 (40%), Gaps = 44/265 (16%)
Query: 62 RTSSLWNSSQSTSSSSQENNSAQSSLLPSMNEQSQKTQNISSFDSELFLEELDELPPLSP 121
RT S+S + + +E+ + ++ L E+ +K + E +L +L P
Sbjct: 896 RTHDAKQGSESPAQAGRESEALKAQL-----EEERKRVARVQHELEAQRSQLLQLRTQRP 950
Query: 122 MQPISEEEAIQIIADPPLPPASFTLRDYVDHSETLQKLVLLGVDLSKIEKHPEAANLLLR 181
++ + E+E ++ DP L + ++ V+ E ++ L DL AA +++
Sbjct: 951 LERLEEKEVVEFYRDPQLEGSLSRVKAQVE--EEGKRRAGLQADLE------VAAQKVVQ 1002
Query: 182 LDFEKDIKQMLLFLKDVGIEDNQLG------------AFLTKNHAIFSEDLENLKTRVAY 229
L+ ++ Q L K+V + G L A+ S LE LK +
Sbjct: 1003 LESKRKTMQPHLLTKEVTQVERDPGLDSQAAQLRIQIQQLRGEDAVISARLEGLKKELLA 1062
Query: 230 LHSKNF---SKADVAQMVR--------KAPFLLNFSVERLDNRLGFFQKELELSVKKTRD 278
L + K V ++V+ KA L +E R +K+ E +V K +
Sbjct: 1063 LEKREVDVKEKVVVKEVVKVEKNLEMVKAAQALRLQMEEDAAR----RKQAEEAVAKLQA 1118
Query: 279 LVVRLPRLLTGSLEP---VKENMKV 300
+ L R ++ S+EP VKE KV
Sbjct: 1119 RIEDLERAIS-SVEPKVIVKEVKKV 1142
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 31.2 bits (69), Expect = 1.8
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 63 TSSLWNSSQSTSSSSQENNSAQSSLLPSMNEQSQKTQNISSFDS 106
+SS +SS STSSSS ++S+ SS S + S T SS DS
Sbjct: 578 SSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDS 621
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 30.8 bits (68), Expect = 2.4
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 42 SAQPQISSDNCFLQWGFKTYRTSSLWNSSQSTSSSSQENNSAQSSLLPSMNEQSQKTQNI 101
+A P SS + + +SS +SS S+SSSS ++S+ SS S + S + +
Sbjct: 2609 AASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2668
Query: 102 SS--FDSELFLEELDELPPLSPMQPISE 127
SS D + DE P P ++
Sbjct: 2669 SSSTTDEDSSCSSDDEAAPAPTAGPSAQ 2696
>gi|57863275 vacuolar protein sorting 8 homolog isoform b [Homo
sapiens]
Length = 1426
Score = 30.8 bits (68), Expect = 2.4
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 311 EIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFKVKE 364
E +H +I + ++ E F+++HN++SIP H + V+ + ++E
Sbjct: 912 EREHQYDKIIDCYLRDPLREEEVFNYIHNILSIPGHSAEEKQSVWQKAMDHIEE 965
>gi|57863277 vacuolar protein sorting 8 homolog isoform a [Homo
sapiens]
Length = 1428
Score = 30.8 bits (68), Expect = 2.4
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 311 EIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFKVKE 364
E +H +I + ++ E F+++HN++SIP H + V+ + ++E
Sbjct: 914 EREHQYDKIIDCYLRDPLREEEVFNYIHNILSIPGHSAEEKQSVWQKAMDHIEE 967
>gi|149393138 hypothetical protein LOC84067 isoform 2 [Homo sapiens]
Length = 972
Score = 30.8 bits (68), Expect = 2.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 118 PLSPMQPISEEEAIQIIADPPLPPASF 144
PL P P+ EEEA + PP PP F
Sbjct: 695 PLEPPLPLEEEEAYESFTCPPEPPGPF 721
>gi|149393140 hypothetical protein LOC84067 isoform 1 [Homo sapiens]
Length = 986
Score = 30.8 bits (68), Expect = 2.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 118 PLSPMQPISEEEAIQIIADPPLPPASF 144
PL P P+ EEEA + PP PP F
Sbjct: 709 PLEPPLPLEEEEAYESFTCPPEPPGPF 735
>gi|169168964 PREDICTED: hypothetical protein LOC100131031 [Homo
sapiens]
Length = 252
Score = 30.0 bits (66), Expect = 4.1
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 206 GAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFF 265
G LTK + + + L +LKT L SK + + L VE RL
Sbjct: 170 GKTLTKTVSQYGQQLNDLKTENTMLKSK-------LEKENQNKERLEAEVESFHARLAAA 222
Query: 266 QKELELSVKKTRDLVVRLPRLLTGSLEPVK 295
E + SVK RDL + L R SL+ K
Sbjct: 223 ISECDQSVKTKRDLELALQRAQDVSLQERK 252
>gi|169168628 PREDICTED: hypothetical protein LOC100131031 [Homo
sapiens]
Length = 252
Score = 30.0 bits (66), Expect = 4.1
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 206 GAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFF 265
G LTK + + + L +LKT L SK + + L VE RL
Sbjct: 170 GKTLTKTVSQYGQQLNDLKTENTMLKSK-------LEKENQNKERLEAEVESFHARLAAA 222
Query: 266 QKELELSVKKTRDLVVRLPRLLTGSLEPVK 295
E + SVK RDL + L R SL+ K
Sbjct: 223 ISECDQSVKTKRDLELALQRAQDVSLQERK 252
>gi|169169551 PREDICTED: hypothetical protein LOC100131031 [Homo
sapiens]
Length = 252
Score = 30.0 bits (66), Expect = 4.1
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 206 GAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFF 265
G LTK + + + L +LKT L SK + + L VE RL
Sbjct: 170 GKTLTKTVSQYGQQLNDLKTENTMLKSK-------LEKENQNKERLEAEVESFHARLAAA 222
Query: 266 QKELELSVKKTRDLVVRLPRLLTGSLEPVK 295
E + SVK RDL + L R SL+ K
Sbjct: 223 ISECDQSVKTKRDLELALQRAQDVSLQERK 252
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 30.0 bits (66), Expect = 4.1
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 63 TSSLWNSSQSTSSSSQENNSAQSSLLPSMNEQSQKTQNISSFDS 106
+SS +SS S+SSSS ++S S PS +S + + SS+ S
Sbjct: 1480 SSSSSSSSSSSSSSSSSSSSRSRSRSPSPRRRSDRRRRYSSYRS 1523
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 30.0 bits (66), Expect = 4.1
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 59 KTYRTSSLWNSSQSTSSSSQENNSAQSSLLPSMNEQSQKTQNISS 103
++ TSS +SS S+SSSS ++S+ SS S + S + + SS
Sbjct: 144 RSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 188
Score = 28.9 bits (63), Expect = 9.0
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 63 TSSLWNSSQSTSSSSQENNSAQSSLLPSMNEQSQKTQNISSF 104
+SS +SS S+SSSS ++S+ SS S + S + + +SF
Sbjct: 152 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSF 193
>gi|195976782 Paf1/RNA polymerase II complex component [Homo
sapiens]
Length = 710
Score = 30.0 bits (66), Expect = 4.1
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 62 RTSSLWNSSQSTSSSSQENNSAQSSLLPSMNEQSQKTQNISSFDSELFLEELDELPPLSP 121
RT+ L Q +S ++ + +E+S ++ SS D E EE +E+PP S
Sbjct: 295 RTAELLAKKQPLKTSEVYSDDEEEEEDDKSSEKSDRSSRTSSSDEE---EEKEEIPPKS- 350
Query: 122 MQPISEEEAI 131
QP+S E +
Sbjct: 351 -QPVSLPEEL 359
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 30.0 bits (66), Expect = 4.1
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 64 SSLWNSSQSTSSSSQENNSAQSSL-------LPSMNEQSQKTQNISS-------FDSELF 109
S W + S+ SSS ++SA SSL +PS N KT S E
Sbjct: 1258 SVTWARASSSLSSSSSSSSAASSLDADEDGPMPSRNRPPIKTYEARSRIGLKLKIKQEAG 1317
Query: 110 LEELDELPPLSPM-QPISEEEAIQIIADPPLPP 141
L ++ L P+ QP +++ PP PP
Sbjct: 1318 LSKVVHNTALDPVHQPPPPPATLKVAEPPPRPP 1350
>gi|38201644 homeodomain-interacting protein kinase 1 isoform 4
[Homo sapiens]
Length = 816
Score = 30.0 bits (66), Expect = 4.1
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Query: 84 QSSLLPSM-NEQSQKTQNISSFDSELFLEELDELPPLSPMQ---------PISEEEAIQI 133
QSS LPS N+QS + SS D + ++ L SP++ P+ ++ I
Sbjct: 443 QSSSLPSKKNKQSAPVSSKSSLD--VLPSQVYSLVGSSPLRTTSSYNSLVPVQDQHQPII 500
Query: 134 IADPPLPPAS-FTLRDYVDHSE 154
I D P PP S T+R D E
Sbjct: 501 IPDTPSPPVSVITIRSDTDEEE 522
>gi|38201642 homeodomain-interacting protein kinase 1 isoform 3
[Homo sapiens]
Length = 836
Score = 30.0 bits (66), Expect = 4.1
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Query: 84 QSSLLPSM-NEQSQKTQNISSFDSELFLEELDELPPLSPMQ---------PISEEEAIQI 133
QSS LPS N+QS + SS D + ++ L SP++ P+ ++ I
Sbjct: 463 QSSSLPSKKNKQSAPVSSKSSLD--VLPSQVYSLVGSSPLRTTSSYNSLVPVQDQHQPII 520
Query: 134 IADPPLPPAS-FTLRDYVDHSE 154
I D P PP S T+R D E
Sbjct: 521 IPDTPSPPVSVITIRSDTDEEE 542
>gi|38201640 homeodomain-interacting protein kinase 1 isoform 1
[Homo sapiens]
Length = 1210
Score = 30.0 bits (66), Expect = 4.1
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Query: 84 QSSLLPSM-NEQSQKTQNISSFDSELFLEELDELPPLSPMQ---------PISEEEAIQI 133
QSS LPS N+QS + SS D + ++ L SP++ P+ ++ I
Sbjct: 837 QSSSLPSKKNKQSAPVSSKSSLD--VLPSQVYSLVGSSPLRTTSSYNSLVPVQDQHQPII 894
Query: 134 IADPPLPPAS-FTLRDYVDHSE 154
I D P PP S T+R D E
Sbjct: 895 IPDTPSPPVSVITIRSDTDEEE 916
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,896,328
Number of Sequences: 37866
Number of extensions: 581283
Number of successful extensions: 2551
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 2499
Number of HSP's gapped (non-prelim): 86
length of query: 417
length of database: 18,247,518
effective HSP length: 105
effective length of query: 312
effective length of database: 14,271,588
effective search space: 4452735456
effective search space used: 4452735456
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.