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Search of human proteins with 34147416
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|34147416 breast cancer metastasis-suppressor 1-like [Homo
sapiens]
(323 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34147416 breast cancer metastasis-suppressor 1-like [Homo sap... 658 0.0
gi|17530785 breast cancer metastasis suppressor 1 isoform 1 [Hom... 256 1e-68
gi|68348702 breast cancer metastasis suppressor 1 isoform 2 [Hom... 254 6e-68
gi|75677351 suppressor of defective silencing 3 [Homo sapiens] 133 2e-31
gi|38569484 kinesin family member 21A [Homo sapiens] 45 7e-05
gi|4885583 Rho-associated, coiled-coil containing protein kinase... 42 7e-04
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 40 0.002
gi|156071450 nardilysin isoform a [Homo sapiens] 40 0.003
gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [... 40 0.003
gi|115529449 upstream binding transcription factor, RNA polymera... 40 0.004
gi|115529451 upstream binding transcription factor, RNA polymera... 40 0.004
gi|7657671 upstream binding transcription factor, RNA polymerase... 40 0.004
gi|51477718 TATA box binding protein-associated factor, RNA poly... 40 0.004
gi|239735588 TRAF2 and NCK interacting kinase isoform 6 [Homo sa... 39 0.005
gi|239735586 TRAF2 and NCK interacting kinase isoform 5 [Homo sa... 39 0.005
gi|239735580 TRAF2 and NCK interacting kinase isoform 2 [Homo sa... 39 0.005
gi|55741807 TRAF2 and NCK interacting kinase isoform 1 [Homo sap... 39 0.005
gi|156071452 nardilysin isoform b [Homo sapiens] 39 0.005
gi|83716024 kinesin family member 21B [Homo sapiens] 39 0.005
gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens] 39 0.008
gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens] 39 0.008
gi|151101404 prothymosin, alpha isoform 2 [Homo sapiens] 39 0.008
gi|50726968 microfibrillar-associated protein 1 [Homo sapiens] 39 0.008
gi|151101407 prothymosin, alpha isoform 1 [Homo sapiens] 38 0.011
gi|226423929 zinc finger, imprinted 2 [Homo sapiens] 38 0.011
gi|226423927 zinc finger, imprinted 2 [Homo sapiens] 38 0.011
gi|33354273 zinc finger, imprinted 2 [Homo sapiens] 38 0.011
gi|122937227 U2-associated SR140 protein [Homo sapiens] 38 0.011
gi|113420848 PREDICTED: hypothetical protein [Homo sapiens] 38 0.014
gi|171906567 peripheral benzodiazepine receptor-associated prote... 38 0.014
>gi|34147416 breast cancer metastasis-suppressor 1-like [Homo
sapiens]
Length = 323
Score = 658 bits (1697), Expect = 0.0
Identities = 323/323 (100%), Positives = 323/323 (100%)
Query: 1 MPVHSRGDKKETNHHDEMEVDYAENEGSSSEDEDTESSSVSEDGDSSEMDDEDCERRRME 60
MPVHSRGDKKETNHHDEMEVDYAENEGSSSEDEDTESSSVSEDGDSSEMDDEDCERRRME
Sbjct: 1 MPVHSRGDKKETNHHDEMEVDYAENEGSSSEDEDTESSSVSEDGDSSEMDDEDCERRRME 60
Query: 61 CLDEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVA 120
CLDEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVA
Sbjct: 61 CLDEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVA 120
Query: 121 GIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSE 180
GIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSE
Sbjct: 121 GIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSE 180
Query: 181 LWNDELQSRKKRKDPFSPDKKKPVVVSGPYIVYMLQDLDILEDWTTIRKAMATLGPHRVK 240
LWNDELQSRKKRKDPFSPDKKKPVVVSGPYIVYMLQDLDILEDWTTIRKAMATLGPHRVK
Sbjct: 181 LWNDELQSRKKRKDPFSPDKKKPVVVSGPYIVYMLQDLDILEDWTTIRKAMATLGPHRVK 240
Query: 241 TEPPVKLEKHLHSARSEEGRLYYDGEWYIRGQTICIDKKDECPTSAVITTINHDEVWFKR 300
TEPPVKLEKHLHSARSEEGRLYYDGEWYIRGQTICIDKKDECPTSAVITTINHDEVWFKR
Sbjct: 241 TEPPVKLEKHLHSARSEEGRLYYDGEWYIRGQTICIDKKDECPTSAVITTINHDEVWFKR 300
Query: 301 PDGSKSKLYISQLQKGKYSIKHS 323
PDGSKSKLYISQLQKGKYSIKHS
Sbjct: 301 PDGSKSKLYISQLQKGKYSIKHS 323
>gi|17530785 breast cancer metastasis suppressor 1 isoform 1 [Homo
sapiens]
Length = 246
Score = 256 bits (655), Expect = 1e-68
Identities = 130/236 (55%), Positives = 178/236 (75%), Gaps = 7/236 (2%)
Query: 16 DEMEVD---YAENEGSSSEDEDTESSSVSE-DGDSSEMDDEDCERRRMECLDEMSNLEKQ 71
+EME + AE G E E+ S S +E + +SSEMDDED ERRR EC+ EM +LEKQ
Sbjct: 11 EEMEAEGDSAAEMNGEEEESEEERSGSQTESEEESSEMDDEDYERRRSECVSEMLDLEKQ 70
Query: 72 FTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVAGIYRELCLESV 131
F++LK++L++ERLSQ+ +L+EV A +APEY EPL LQ +++IR +VAGIY+ CL+ +
Sbjct: 71 FSELKEKLFRERLSQLRLRLEEVGAERAPEYTEPLGGLQRSLKIRIQVAGIYKGFCLDVI 130
Query: 132 KNKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSELWNDELQSRKK 191
+NKYECE+Q ++QH ESEKLLLYDT+Q EL+E+I+RLEEDR S+D++SE W+D+L +R
Sbjct: 131 RNKYECELQGAKQHLESEKLLLYDTLQGELQERIQRLEEDRQSLDLSSEWWDDKLHARGS 190
Query: 192 RK--DPFSPDK-KKPVVVSGPYIVYMLQDLDILEDWTTIRKAMATLGPHRVKTEPP 244
+ D P K KK +VSGPYIVYMLQ++DILEDWT I+KA A + P + K++ P
Sbjct: 191 SRSWDSLPPSKRKKAPLVSGPYIVYMLQEIDILEDWTAIKKARAAVSPQKRKSDGP 246
>gi|68348702 breast cancer metastasis suppressor 1 isoform 2 [Homo
sapiens]
Length = 290
Score = 254 bits (650), Expect = 6e-68
Identities = 129/234 (55%), Positives = 177/234 (75%), Gaps = 7/234 (2%)
Query: 16 DEMEVD---YAENEGSSSEDEDTESSSVSE-DGDSSEMDDEDCERRRMECLDEMSNLEKQ 71
+EME + AE G E E+ S S +E + +SSEMDDED ERRR EC+ EM +LEKQ
Sbjct: 11 EEMEAEGDSAAEMNGEEEESEEERSGSQTESEEESSEMDDEDYERRRSECVSEMLDLEKQ 70
Query: 72 FTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVAGIYRELCLESV 131
F++LK++L++ERLSQ+ +L+EV A +APEY EPL LQ +++IR +VAGIY+ CL+ +
Sbjct: 71 FSELKEKLFRERLSQLRLRLEEVGAERAPEYTEPLGGLQRSLKIRIQVAGIYKGFCLDVI 130
Query: 132 KNKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSELWNDELQSRKK 191
+NKYECE+Q ++QH ESEKLLLYDT+Q EL+E+I+RLEEDR S+D++SE W+D+L +R
Sbjct: 131 RNKYECELQGAKQHLESEKLLLYDTLQGELQERIQRLEEDRQSLDLSSEWWDDKLHARGS 190
Query: 192 RK--DPFSPDK-KKPVVVSGPYIVYMLQDLDILEDWTTIRKAMATLGPHRVKTE 242
+ D P K KK +VSGPYIVYMLQ++DILEDWT I+KA A + P + K++
Sbjct: 191 SRSWDSLPPSKRKKAPLVSGPYIVYMLQEIDILEDWTAIKKARAAVSPQKRKSD 244
>gi|75677351 suppressor of defective silencing 3 [Homo sapiens]
Length = 328
Score = 133 bits (334), Expect = 2e-31
Identities = 85/303 (28%), Positives = 157/303 (51%), Gaps = 17/303 (5%)
Query: 31 EDEDTESSSVSEDGDSSEMDDEDCERRRMECLDEMSNLEKQFTDLKDQLYKERLSQVDAK 90
EDE+ ES+ E DED E D + E+ + ++K+Q+Y+++L+ + +
Sbjct: 26 EDEELESAEDDERSCRGRESDEDTEDASET--DLAKHDEEDYVEMKEQMYQDKLASLKRQ 83
Query: 91 LQEVIAGKAPEYLEPLATLQENMQIRTKVAGIYRELCLESVKNKYECEIQASRQHCESEK 150
LQ++ G EY + + L + + R + A ++ +L E V+ Y E +A+ + E +K
Sbjct: 84 LQQLQEGTLQEYQKRMKKLDQQYKERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKK 143
Query: 151 LLLYDTVQSELEEKIRRLEEDRHSIDITSELWN-DELQSRKKRKDPFSP-----DKKKPV 204
+ L + + +ELEEK + +E ++ ++++T + + +RK R+ P P ++KP
Sbjct: 144 VELKENLIAELEEKKKMIENEKLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPA 203
Query: 205 VVSGPYIVYMLQDLDILEDWTTIRKAMATLGPHRVKT-----EPPVKLEKHLHSARSEEG 259
+ Y+L D I+ED T+ K + P + P + AR E+G
Sbjct: 204 PAQ---LNYLLTDEQIMEDLRTLNKLKSPKRPASPSSPEHLPATPAESPAQRFEARIEDG 260
Query: 260 RLYYDGEWYIRGQTICIDKKDECPTSAVITTINHDEVWF-KRPDGSKSKLYISQLQKGKY 318
+LYYD WY + Q I ++ KD S VI+++ +E+W K D +K ++Y+ QLQ+G +
Sbjct: 261 KLYYDKRWYHKSQAIYLESKDNQKLSCVISSVGANEIWVRKTSDSTKMRIYLGQLQRGLF 320
Query: 319 SIK 321
I+
Sbjct: 321 VIR 323
>gi|38569484 kinesin family member 21A [Homo sapiens]
Length = 1661
Score = 45.4 bits (106), Expect = 7e-05
Identities = 42/182 (23%), Positives = 88/182 (48%), Gaps = 40/182 (21%)
Query: 15 HDEMEVDYAENEGSSSEDEDTESSSVSED---GDSSEMDDEDCERR-------------- 57
++E+EV+ ++ E S EDE+ E +D G+SS+ D + + +
Sbjct: 583 NNELEVEESQ-EVSDHEDEEEEEEEEEDDIDGGESSDESDSESDEKANYQADLANITCEI 641
Query: 58 --RMECLDEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQI 115
+ + +DE+ N +K+ LK Q Y+E+L + K+++ + + L+ L +++
Sbjct: 642 AIKQKLIDELENSQKRLQTLKKQ-YEEKLMMLQHKIRDTQL-ERDQVLQNLGSVES---- 695
Query: 116 RTKVAGIYRELCLESVKNKYECEIQASR------QHCESEKLLLYDTVQSELEEKIRRLE 169
Y E + V+++YE ++QA Q + E L QS+ E+++++L+
Sbjct: 696 -------YSEEKAKKVRSEYEKKLQAMNKELQRLQAAQKEHARLLKN-QSQYEKQLKKLQ 747
Query: 170 ED 171
+D
Sbjct: 748 QD 749
>gi|4885583 Rho-associated, coiled-coil containing protein kinase 1
[Homo sapiens]
Length = 1354
Score = 42.0 bits (97), Expect = 7e-04
Identities = 36/174 (20%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 9 KKETNHHDEMEVDYAENEGSSSEDEDTESSSVSEDGDSSEMDDEDCERRRMECLDEMSNL 68
K E H+EM++ ++ +S++ D E+D+E +RR +E
Sbjct: 434 KLEEQLHNEMQL-------KDEMEQKCRTSNIKLDKIMKELDEEGNQRRNLESTVSQIEK 486
Query: 69 EKQFTDLKDQLYKERLSQVDAKLQEV--IAGKAPEYLEPLATLQENMQI-RTKVAGIYRE 125
EK + Y+ + Q + K + V + LE L + +N Q+ K++ + ++
Sbjct: 487 EKMLLQHRINEYQRKAEQENEKRRNVENEVSTLKDQLEDLKKVSQNSQLANEKLSQLQKQ 546
Query: 126 L--CLESVKNKYECEIQASRQHCE-SEKLLLYDTVQSELEEKIRRLEEDRHSID 176
L + ++ + + ++ + H E S+ + +++ EL+E+ R LE + D
Sbjct: 547 LEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTD 600
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 40.4 bits (93), Expect = 0.002
Identities = 34/178 (19%), Positives = 80/178 (44%), Gaps = 4/178 (2%)
Query: 21 DYAENEGSSSEDEDTESSSVSEDGDSSEMD-DEDCERRRMECLDEMSNLEKQFTDLKDQL 79
D S ++ +E ++ G ++ +D ++ C+ + + +M N K+ +LK L
Sbjct: 860 DKLSKVSDSLKNSKSEFEKENQKGKAAILDLEKTCKELKHQLQVQMENTLKEQKELKKSL 919
Query: 80 YKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVAGIYRELCLESVKNKYECE- 138
KE+ + KL+ + + ++ TL++N + ++ G EL S + K + E
Sbjct: 920 EKEKEASHQLKLE--LNSMQEQLIQAQNTLKQNEKEEQQLQGNINELKQSSEQKKKQIEA 977
Query: 139 IQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSELWNDELQSRKKRKDPF 196
+Q + +K L + +Q +L + + L ++ I + + ++ K+ + F
Sbjct: 978 LQGELKIAVLQKTELENKLQQQLTQAAQELAAEKEKISVLQNNYEKSQETFKQLQSDF 1035
Score = 38.1 bits (87), Expect = 0.011
Identities = 41/183 (22%), Positives = 86/183 (46%), Gaps = 12/183 (6%)
Query: 19 EVDYAENEGSSSEDEDTESSSVSEDGDSSEMDDEDCERRRMECLDEMSNLEKQFTDLKD- 77
E DY + E E + ES S + D DC++ + ++L + +L +
Sbjct: 315 EQDYTKLE----EKHNEESVSKKNIQATLHQKDLDCQQLQSRLSASETSLHRIHVELSEK 370
Query: 78 ----QLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVAGIYRELCLESVKN 133
Q KE LS+V+ K Q + A + Q +Q+++++ ++ +L LE+ +
Sbjct: 371 GEATQKLKEELSEVETKYQHLKAEFKQLQQQREEKEQHGLQLQSEINQLHSKL-LETERQ 429
Query: 134 KYECEIQASRQH-CESEKLLLYDTVQSELEEKIRRLEED-RHSIDITSELWNDELQSRKK 191
E + Q SEKL+ + ++L+ K+ RLEE + + ++EL + +++++
Sbjct: 430 LGEAHGRLKEQRQLSSEKLMDKEQQVADLQLKLSRLEEQLKEKVTNSTELQHQLDKTKQQ 489
Query: 192 RKD 194
++
Sbjct: 490 HQE 492
Score = 35.4 bits (80), Expect = 0.069
Identities = 38/174 (21%), Positives = 83/174 (47%), Gaps = 20/174 (11%)
Query: 35 TESSSVSEDGDSSEMDDEDCERRRMECLDEMSNLEKQFTDLKDQLY--KERLSQVD---- 88
+ES +++ ++ ++ R + D + +LE +L QL KE++SQ+D
Sbjct: 588 SESHKQAQENLHDQVQEQKAHLRAAQ--DRVLSLETSVNELNSQLNESKEKVSQLDIQIK 645
Query: 89 AKLQEVIAGKAPEYLEPLATLQENMQI-RTKVAGIYRELC-LESVKNKYECEIQASRQHC 146
AK + +++ +A + + A LQ ++ + + +EL + + ++ ++Q ++HC
Sbjct: 646 AKTELLLSAEAAKTAQR-ADLQNHLDTAQNALQDKQQELNKITTQLDQVTAKLQDKQEHC 704
Query: 147 ES---------EKLLLYDTVQSELEEKIRRLEEDRHSIDITSELWNDELQSRKK 191
EK L + ELE +I++LE D + + E +LQ +++
Sbjct: 705 SQLESHLKEYKEKYLSLEQKTEELEGQIKKLEADSLEVKASKEQALQDLQQQRQ 758
>gi|156071450 nardilysin isoform a [Homo sapiens]
Length = 1219
Score = 40.0 bits (92), Expect = 0.003
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 8 DKKETNHHDEMEVDYAENEGSSSEDEDTESSSVSEDGDSSEMDDEDCERRRMECLDEMSN 67
D +E +E E D E+ G+ ED+D E ++ D DD D E +E L+E +
Sbjct: 142 DDEEEEEVEEEEEDDDEDSGAEIEDDDEEGFDDEDEFDDEHDDDLDTEDNELEELEERAE 201
Query: 68 LEKQFTDLKDQL 79
K+ T+ K QL
Sbjct: 202 ARKKTTE-KQQL 212
>gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [Homo
sapiens]
Length = 1937
Score = 40.0 bits (92), Expect = 0.003
Identities = 39/185 (21%), Positives = 86/185 (46%), Gaps = 12/185 (6%)
Query: 30 SEDEDTESSSVSEDGDSSEMDDEDCERRRMECLDEMSNLEKQFTDLKDQLYKERLSQVDA 89
S + + E +++ E+ ++ + E +R E ++M L K+ DL+ Q+ E S DA
Sbjct: 845 SAETEKEMATMKEEFQKTKDELAKSEAKRKELEEKMVTLLKEKNDLQLQVQSEADSLADA 904
Query: 90 --KLQEVIAGK---APEYLEPLATLQENMQIRTKVAGIYREL---CLESVKNKYECEIQA 141
+ +++I K + E +E +I ++ R+L C E K+ + E+
Sbjct: 905 EERCEQLIKNKIQLEAKIKEVTERAEEEEEINAELTAKKRKLEDECSELKKDIDDLELTL 964
Query: 142 SR----QHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSELWNDELQSRKKRKDPFS 197
++ +H K+ + L+E I +L +++ ++ T + D+LQ+ + + + +
Sbjct: 965 AKVEKEKHATENKVKNLTEEMAGLDETIAKLSKEKKALQETHQQTLDDLQAEEDKVNILT 1024
Query: 198 PDKKK 202
K K
Sbjct: 1025 KAKTK 1029
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 39.7 bits (91), Expect = 0.004
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 8 DKKETNHHDEMEVDYAENEGSSSED--EDTESSSV--SEDGDSSEMDDED 53
D+++ + DE E + + G SSED + +ESSS SEDGD +E DDED
Sbjct: 644 DEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDED 693
Score = 33.9 bits (76), Expect = 0.20
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 2 PVHSRGDKKETNHHDEMEVDYAENEGSSSEDEDTESSSVSED-GDSSEMDDED 53
P SR + + +E + + ++E E+ED E+ SED GDSSE ED
Sbjct: 627 PKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSED 679
Score = 31.2 bits (69), Expect = 1.3
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 14/57 (24%)
Query: 7 GDKKETNHHDEMEVDYAENEGSSSEDEDTE-------------SSSVSEDGDSSEMD 50
GD E++ DE E D ENE +++D E SSS S GDSS+ D
Sbjct: 670 GDSSESSSEDESE-DGDENEEDDEDEDDDEDDDEDEDNESEGSSSSSSSSGDSSDSD 725
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 39.7 bits (91), Expect = 0.004
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 8 DKKETNHHDEMEVDYAENEGSSSED--EDTESSSV--SEDGDSSEMDDED 53
D+++ + DE E + + G SSED + +ESSS SEDGD +E DDED
Sbjct: 644 DEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDED 693
Score = 33.9 bits (76), Expect = 0.20
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 2 PVHSRGDKKETNHHDEMEVDYAENEGSSSEDEDTESSSVSED-GDSSEMDDED 53
P SR + + +E + + ++E E+ED E+ SED GDSSE ED
Sbjct: 627 PKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSED 679
Score = 31.2 bits (69), Expect = 1.3
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 14/57 (24%)
Query: 7 GDKKETNHHDEMEVDYAENEGSSSEDEDTE-------------SSSVSEDGDSSEMD 50
GD E++ DE E D ENE +++D E SSS S GDSS+ D
Sbjct: 670 GDSSESSSEDESE-DGDENEEDDEDEDDDEDDDEDEDNESEGSSSSSSSSGDSSDSD 725
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 39.7 bits (91), Expect = 0.004
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 8 DKKETNHHDEMEVDYAENEGSSSED--EDTESSSV--SEDGDSSEMDDED 53
D+++ + DE E + + G SSED + +ESSS SEDGD +E DDED
Sbjct: 681 DEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDED 730
Score = 33.9 bits (76), Expect = 0.20
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 2 PVHSRGDKKETNHHDEMEVDYAENEGSSSEDEDTESSSVSED-GDSSEMDDED 53
P SR + + +E + + ++E E+ED E+ SED GDSSE ED
Sbjct: 664 PKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSED 716
Score = 31.2 bits (69), Expect = 1.3
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 14/57 (24%)
Query: 7 GDKKETNHHDEMEVDYAENEGSSSEDEDTE-------------SSSVSEDGDSSEMD 50
GD E++ DE E D ENE +++D E SSS S GDSS+ D
Sbjct: 707 GDSSESSSEDESE-DGDENEEDDEDEDDDEDDDEDEDNESEGSSSSSSSSGDSSDSD 762
>gi|51477718 TATA box binding protein-associated factor, RNA
polymerase II, Q [Homo sapiens]
Length = 462
Score = 39.7 bits (91), Expect = 0.004
Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 13/168 (7%)
Query: 5 SRGDKKETNHHDEMEVDYAE---NEGSSSEDEDTESSSVSEDGDSSEMDDEDCERRRMEC 61
S G H E D ++ S+ D+D + ED D E +DED E +C
Sbjct: 303 SSGMSSHKQGHTSSEYDMLREMFSDSRSNNDDDEDEDDEDEDEDEDEDEDEDKEEEEEDC 362
Query: 62 LDEM--SNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKV 119
+E L+ +F + E S + ++Q+ I K + + Q + KV
Sbjct: 363 SEEYLERQLQAEFIESGQYRANEGTSSIVMEIQKQIEKKEKKLHKIQNKAQRQKDLIMKV 422
Query: 120 AGIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSELEEKIRR 167
+ + +SV + E + + ++EKL+ ++Q +L+ +++
Sbjct: 423 ENLTLKNHFQSVLEQLELQ-----EKQKNEKLI---SLQEQLQRFLKK 462
>gi|239735588 TRAF2 and NCK interacting kinase isoform 6 [Homo
sapiens]
Length = 1297
Score = 39.3 bits (90), Expect = 0.005
Identities = 49/218 (22%), Positives = 97/218 (44%), Gaps = 21/218 (9%)
Query: 4 HSRGDKKETNHHDEMEVDYAENEGSSSEDEDTESSSV-SEDGDSSEMDD----EDCERRR 58
H KK+ DE E +Y+ +E E++ E SS+ + G+S+ D + + R
Sbjct: 305 HIDRTKKKRGEKDETEYEYSGSEEEEEENDSGEPSSILNLPGESTLRRDFLRLQLANKER 364
Query: 59 MECL--DEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIR 116
E L ++ +++ + K QL ER +++ + ++ + + E Q+ + R
Sbjct: 365 SEALRRQQLEQQQRENEEHKRQLLAERQKRIEEQKEQRRRLEEQQRREKELRKQQEREQR 424
Query: 117 TKVAGIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSE--------LEEKIRRL 168
++ E + + E E + R+ E E+ L + +Q + LE K ++L
Sbjct: 425 RHYE---EQMRREEERRRAEHEQEYIRRQLEEEQRQL-EILQQQLLHEQALLLEYKRKQL 480
Query: 169 EEDRHSIDITSEL--WNDELQSRKKRKDPFSPDKKKPV 204
EE R + + +L D L S + ++ P +KKP+
Sbjct: 481 EEQRQAERLQRQLKQERDYLVSLQHQRQEQRPVEKKPL 518
>gi|239735586 TRAF2 and NCK interacting kinase isoform 5 [Homo
sapiens]
Length = 1305
Score = 39.3 bits (90), Expect = 0.005
Identities = 49/218 (22%), Positives = 97/218 (44%), Gaps = 21/218 (9%)
Query: 4 HSRGDKKETNHHDEMEVDYAENEGSSSEDEDTESSSV-SEDGDSSEMDD----EDCERRR 58
H KK+ DE E +Y+ +E E++ E SS+ + G+S+ D + + R
Sbjct: 305 HIDRTKKKRGEKDETEYEYSGSEEEEEENDSGEPSSILNLPGESTLRRDFLRLQLANKER 364
Query: 59 MECL--DEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIR 116
E L ++ +++ + K QL ER +++ + ++ + + E Q+ + R
Sbjct: 365 SEALRRQQLEQQQRENEEHKRQLLAERQKRIEEQKEQRRRLEEQQRREKELRKQQEREQR 424
Query: 117 TKVAGIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSE--------LEEKIRRL 168
++ E + + E E + R+ E E+ L + +Q + LE K ++L
Sbjct: 425 RHYE---EQMRREEERRRAEHEQEYIRRQLEEEQRQL-EILQQQLLHEQALLLEYKRKQL 480
Query: 169 EEDRHSIDITSEL--WNDELQSRKKRKDPFSPDKKKPV 204
EE R + + +L D L S + ++ P +KKP+
Sbjct: 481 EEQRQAERLQRQLKQERDYLVSLQHQRQEQRPVEKKPL 518
>gi|239735580 TRAF2 and NCK interacting kinase isoform 2 [Homo
sapiens]
Length = 1352
Score = 39.3 bits (90), Expect = 0.005
Identities = 49/218 (22%), Positives = 97/218 (44%), Gaps = 21/218 (9%)
Query: 4 HSRGDKKETNHHDEMEVDYAENEGSSSEDEDTESSSV-SEDGDSSEMDD----EDCERRR 58
H KK+ DE E +Y+ +E E++ E SS+ + G+S+ D + + R
Sbjct: 305 HIDRTKKKRGEKDETEYEYSGSEEEEEENDSGEPSSILNLPGESTLRRDFLRLQLANKER 364
Query: 59 MECL--DEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIR 116
E L ++ +++ + K QL ER +++ + ++ + + E Q+ + R
Sbjct: 365 SEALRRQQLEQQQRENEEHKRQLLAERQKRIEEQKEQRRRLEEQQRREKELRKQQEREQR 424
Query: 117 TKVAGIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSE--------LEEKIRRL 168
++ E + + E E + R+ E E+ L + +Q + LE K ++L
Sbjct: 425 RHYE---EQMRREEERRRAEHEQEYIRRQLEEEQRQL-EILQQQLLHEQALLLEYKRKQL 480
Query: 169 EEDRHSIDITSEL--WNDELQSRKKRKDPFSPDKKKPV 204
EE R + + +L D L S + ++ P +KKP+
Sbjct: 481 EEQRQAERLQRQLKQERDYLVSLQHQRQEQRPVEKKPL 518
>gi|55741807 TRAF2 and NCK interacting kinase isoform 1 [Homo
sapiens]
Length = 1360
Score = 39.3 bits (90), Expect = 0.005
Identities = 49/218 (22%), Positives = 97/218 (44%), Gaps = 21/218 (9%)
Query: 4 HSRGDKKETNHHDEMEVDYAENEGSSSEDEDTESSSV-SEDGDSSEMDD----EDCERRR 58
H KK+ DE E +Y+ +E E++ E SS+ + G+S+ D + + R
Sbjct: 305 HIDRTKKKRGEKDETEYEYSGSEEEEEENDSGEPSSILNLPGESTLRRDFLRLQLANKER 364
Query: 59 MECL--DEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIR 116
E L ++ +++ + K QL ER +++ + ++ + + E Q+ + R
Sbjct: 365 SEALRRQQLEQQQRENEEHKRQLLAERQKRIEEQKEQRRRLEEQQRREKELRKQQEREQR 424
Query: 117 TKVAGIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSE--------LEEKIRRL 168
++ E + + E E + R+ E E+ L + +Q + LE K ++L
Sbjct: 425 RHYE---EQMRREEERRRAEHEQEYIRRQLEEEQRQL-EILQQQLLHEQALLLEYKRKQL 480
Query: 169 EEDRHSIDITSEL--WNDELQSRKKRKDPFSPDKKKPV 204
EE R + + +L D L S + ++ P +KKP+
Sbjct: 481 EEQRQAERLQRQLKQERDYLVSLQHQRQEQRPVEKKPL 518
>gi|156071452 nardilysin isoform b [Homo sapiens]
Length = 1151
Score = 39.3 bits (90), Expect = 0.005
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 8 DKKETNHHDEMEVDYAENEGSSSEDEDTESSSVSEDGDSSEMDDEDCERRRMECLDEMSN 67
D +E +E E D E+ G+ ED+D E ++ D DD D E +E L+E +
Sbjct: 142 DDEEEEEVEEEEEDDDEDSGAEIEDDDEEGFDDEDEFDDEHDDDLDTEDNELEELEERAE 201
Query: 68 LEKQFTD 74
K+ T+
Sbjct: 202 ARKKTTE 208
>gi|83716024 kinesin family member 21B [Homo sapiens]
Length = 1624
Score = 39.3 bits (90), Expect = 0.005
Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 21/176 (11%)
Query: 8 DKKETNHHDEMEVDYAENEGSSSEDED--TESSSVSEDGDSSEMD--------DEDCE-R 56
++ E + E E EG EDED +E S V D D E + D CE
Sbjct: 585 NEAEEEEEERDESGCEEEEGREDEDEDSGSEESLVDSDSDPEEKEVNFQADLADLTCEIE 644
Query: 57 RRMECLDEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQ-ENMQI 115
+ + +DE+ N +++ LK Q Y+E+L + K+++ + L+ L+T++ +
Sbjct: 645 IKQKLIDELENSQRRLQTLKHQ-YEEKLILLQNKIRDTQL-ERDRVLQNLSTMECYTEEK 702
Query: 116 RTKVAGIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEED 171
K+ Y + E N+ ++QA+++ E +LL QS E ++++L+ +
Sbjct: 703 ANKIKADYEKRLRE--MNRDLQKLQAAQK--EHARLL---KNQSRYERELKKLQAE 751
>gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 38.5 bits (88), Expect = 0.008
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 7 GDKKETNHHDEMEVDYAENEGSSSEDEDTESSSV-SEDGDSSEMDDEDCERRRMECLDEM 65
G +KE H + ++ + EN+ +SE ED S V E+G E D++ E+ +E
Sbjct: 578 GSEKEL-HENVLDKELEENDSENSEFEDDGSEKVLDEEGSEREFDEDSDEKE-----EEE 631
Query: 66 SNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPE 101
EK F D D+ KE D K E KA E
Sbjct: 632 DTYEKVFDDESDE--KEDEEYADEKGLEAADKKAEE 665
Score = 30.4 bits (67), Expect = 2.2
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 9 KKETNHHDEMEVDYA---ENEGSSSEDEDTESSSVSEDGDSSEMDDEDCERRRMECLDEM 65
KK+T +D E A E++ + +E+ + SE+ DS + DEDC ++ E E
Sbjct: 504 KKKTLKNDCEENGLAKESEDDLNKESEEEVGPTKESEEDDSEKESDEDCSEKQSEDGSER 563
Query: 66 ----SNLEKQFTDLKDQLYKERLSQ--VDAKLQE 93
+ LEK DL ++ ++ L + +D +L+E
Sbjct: 564 EFEENGLEK---DLDEEGSEKELHENVLDKELEE 594
Score = 28.5 bits (62), Expect = 8.4
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 26 EGSSSEDEDTESSSVSEDGDSSEMDDEDCERRRMECLDEMSNLEKQFTD 74
E EDED + V ED D +D+D + + +E + EK F D
Sbjct: 675 ESDDKEDEDADGKEV-EDADEKLFEDDDSNEKLFD--EEEDSSEKLFDD 720
>gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 38.5 bits (88), Expect = 0.008
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 7 GDKKETNHHDEMEVDYAENEGSSSEDEDTESSSV-SEDGDSSEMDDEDCERRRMECLDEM 65
G +KE H + ++ + EN+ +SE ED S V E+G E D++ E+ +E
Sbjct: 578 GSEKEL-HENVLDKELEENDSENSEFEDDGSEKVLDEEGSEREFDEDSDEKE-----EEE 631
Query: 66 SNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPE 101
EK F D D+ KE D K E KA E
Sbjct: 632 DTYEKVFDDESDE--KEDEEYADEKGLEAADKKAEE 665
Score = 30.4 bits (67), Expect = 2.2
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 9 KKETNHHDEMEVDYA---ENEGSSSEDEDTESSSVSEDGDSSEMDDEDCERRRMECLDEM 65
KK+T +D E A E++ + +E+ + SE+ DS + DEDC ++ E E
Sbjct: 504 KKKTLKNDCEENGLAKESEDDLNKESEEEVGPTKESEEDDSEKESDEDCSEKQSEDGSER 563
Query: 66 ----SNLEKQFTDLKDQLYKERLSQ--VDAKLQE 93
+ LEK DL ++ ++ L + +D +L+E
Sbjct: 564 EFEENGLEK---DLDEEGSEKELHENVLDKELEE 594
Score = 28.5 bits (62), Expect = 8.4
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 26 EGSSSEDEDTESSSVSEDGDSSEMDDEDCERRRMECLDEMSNLEKQFTD 74
E EDED + V ED D +D+D + + +E + EK F D
Sbjct: 675 ESDDKEDEDADGKEV-EDADEKLFEDDDSNEKLFD--EEEDSSEKLFDD 720
>gi|151101404 prothymosin, alpha isoform 2 [Homo sapiens]
Length = 110
Score = 38.5 bits (88), Expect = 0.008
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 2 PVHSRGDKKETNHHDEMEVDYAENEGSSSEDEDTESSSVSEDGDSSEMDDEDCERRRME- 60
P + +++ + EVD E EG E+E+ E EDGD E + +R E
Sbjct: 34 PANGNANEENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESATGKRAAED 93
Query: 61 CLDEMSNLEKQFTDLKD 77
D+ + +KQ TD D
Sbjct: 94 DEDDDVDTKKQKTDEDD 110
>gi|50726968 microfibrillar-associated protein 1 [Homo sapiens]
Length = 439
Score = 38.5 bits (88), Expect = 0.008
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 23 AENEGSSSEDEDTESSSVSEDGDSSEMDDEDCERRR---MECLDEMSNLEKQFTDLKDQL 79
+E EG + E +SS E+ E+DDE+ ERRR + E N E + +++D+
Sbjct: 118 SEVEGDAWRMEREDSSEEEEE----EIDDEEIERRRGMMRQRAQERKNEEMEVMEVEDEG 173
Query: 80 YKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVAGIYRELCLESVKNKYECEI 139
S+ +++ +E + + +EP + + IR K +E E++K K E E
Sbjct: 174 RSGEESESESEYEEYT--DSEDEMEPRL---KPVFIRKKDRVTVQEREAEALKQK-ELEQ 227
Query: 140 QASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSELWNDE 185
+A R E K T++ EE + LEE++ S+ L D+
Sbjct: 228 EAKRMAEERRKY----TLKIVEEETKKELEENKRSLAALDALNTDD 269
Score = 30.0 bits (66), Expect = 2.9
Identities = 37/180 (20%), Positives = 82/180 (45%), Gaps = 16/180 (8%)
Query: 6 RGDKKETNHHDEMEVDYAENEGSSSEDEDTESSSVSEDGDSSEMDDEDCERRRMECLDEM 65
R ++++++ +E E+D E E +E+ + E++DE E E
Sbjct: 126 RMEREDSSEEEEEEIDDEEIERRRGMMRQRAQERKNEEMEVMEVEDEGRSGEESESESEY 185
Query: 66 SNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVAGIYRE 125
+++TD +D++ + RL V + ++ + + E E L +E Q ++A R+
Sbjct: 186 ----EEYTDSEDEM-EPRLKPVFIRKKDRVTVQERE-AEALKQ-KELEQEAKRMAEERRK 238
Query: 126 LCLESVKNKYECEIQASRQHCESEKLLLYDTVQSELE---------EKIRRLEEDRHSID 176
L+ V+ + + E++ +++ + L D E E ++I+R EDR +++
Sbjct: 239 YTLKIVEEETKKELEENKRSLAALDALNTDDENDEEEYEAWKVRELKRIKRDREDREALE 298
>gi|151101407 prothymosin, alpha isoform 1 [Homo sapiens]
Length = 111
Score = 38.1 bits (87), Expect = 0.011
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 2 PVHSRGDKKETNHHD-EMEVDYAENEGSSSEDEDTESSSVSEDGDSSEMDDEDCERRRME 60
P + + +E + + EVD E EG E+E+ E EDGD E + +R E
Sbjct: 34 PANGNAENEENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESATGKRAAE 93
Query: 61 -CLDEMSNLEKQFTDLKD 77
D+ + +KQ TD D
Sbjct: 94 DDEDDDVDTKKQKTDEDD 111
>gi|226423929 zinc finger, imprinted 2 [Homo sapiens]
Length = 527
Score = 38.1 bits (87), Expect = 0.011
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 21/146 (14%)
Query: 50 DDEDCERRRMECLDEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATL 109
D E+R E LD + + QF D K L + + ++V+ +PE L L+
Sbjct: 138 DSVPAEKRNTEMLDNLPSAGSQFPDFK-HLGTFLVFEELVTFEDVLVDFSPEELSSLSAA 196
Query: 110 QENMQIRTKVAGIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLE 169
Q N +YRE+ LE+ +N Q S+ D + EE+ +E
Sbjct: 197 QRN---------LYREVMLENYRNLVSLGHQFSKP----------DIISRLEEEESYAME 237
Query: 170 ED-RHSIDITSELWNDELQSRKKRKD 194
D RH++ E +D L+ + ++
Sbjct: 238 TDSRHTVICQGESHDDPLEPHQGNQE 263
>gi|226423927 zinc finger, imprinted 2 [Homo sapiens]
Length = 527
Score = 38.1 bits (87), Expect = 0.011
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 21/146 (14%)
Query: 50 DDEDCERRRMECLDEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATL 109
D E+R E LD + + QF D K L + + ++V+ +PE L L+
Sbjct: 138 DSVPAEKRNTEMLDNLPSAGSQFPDFK-HLGTFLVFEELVTFEDVLVDFSPEELSSLSAA 196
Query: 110 QENMQIRTKVAGIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLE 169
Q N +YRE+ LE+ +N Q S+ D + EE+ +E
Sbjct: 197 QRN---------LYREVMLENYRNLVSLGHQFSKP----------DIISRLEEEESYAME 237
Query: 170 ED-RHSIDITSELWNDELQSRKKRKD 194
D RH++ E +D L+ + ++
Sbjct: 238 TDSRHTVICQGESHDDPLEPHQGNQE 263
>gi|33354273 zinc finger, imprinted 2 [Homo sapiens]
Length = 527
Score = 38.1 bits (87), Expect = 0.011
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 21/146 (14%)
Query: 50 DDEDCERRRMECLDEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATL 109
D E+R E LD + + QF D K L + + ++V+ +PE L L+
Sbjct: 138 DSVPAEKRNTEMLDNLPSAGSQFPDFK-HLGTFLVFEELVTFEDVLVDFSPEELSSLSAA 196
Query: 110 QENMQIRTKVAGIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLE 169
Q N +YRE+ LE+ +N Q S+ D + EE+ +E
Sbjct: 197 QRN---------LYREVMLENYRNLVSLGHQFSKP----------DIISRLEEEESYAME 237
Query: 170 ED-RHSIDITSELWNDELQSRKKRKD 194
D RH++ E +D L+ + ++
Sbjct: 238 TDSRHTVICQGESHDDPLEPHQGNQE 263
>gi|122937227 U2-associated SR140 protein [Homo sapiens]
Length = 1029
Score = 38.1 bits (87), Expect = 0.011
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 13 NHHDEMEVDYAENEGSSSED-EDTESSSVSEDGDSSEMDDEDCERRRMECLDEMSNLEKQ 71
+ H+E E + +N+ SED EDT+SS E S E+ + EMS EK
Sbjct: 783 DQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPIKEEMTESKFSKYSEMSE-EK- 840
Query: 72 FTDLKDQLYKERLSQVDAKL----QEVIAGKAPEYLEPLATLQENMQIRTKVAGIYRELC 127
+ +L +++ K+ E+ +GK P+ +P + QE ++ YR+
Sbjct: 841 ---------RAKLREIELKVMKFQDELESGKRPK--KPGQSFQEQVE-------HYRDKL 882
Query: 128 LESVKNKYECEIQASRQHCESEKLLLYDTVQSELEE--KIRRLEEDRHS 174
L+ K K E E + R + EKL + E +E R+ + RHS
Sbjct: 883 LQREKEK-ELERERERDKKDKEKLESRSKDKKEKDECTPTRKERKRRHS 930
>gi|113420848 PREDICTED: hypothetical protein [Homo sapiens]
Length = 109
Score = 37.7 bits (86), Expect = 0.014
Identities = 20/76 (26%), Positives = 33/76 (43%)
Query: 2 PVHSRGDKKETNHHDEMEVDYAENEGSSSEDEDTESSSVSEDGDSSEMDDEDCERRRMEC 61
P + +++ + EVD E E+E+ E EDGD E + +R +
Sbjct: 34 PANGNANEENGEQEADKEVDEEGEESGEEEEEEKEGDGEEEDGDEEEAESATGKRAAEDD 93
Query: 62 LDEMSNLEKQFTDLKD 77
D+ + +KQ TD D
Sbjct: 94 EDDDVDTKKQKTDKDD 109
>gi|171906567 peripheral benzodiazepine receptor-associated protein
1 isoform b [Homo sapiens]
Length = 1797
Score = 37.7 bits (86), Expect = 0.014
Identities = 38/179 (21%), Positives = 80/179 (44%), Gaps = 16/179 (8%)
Query: 17 EMEVDYAENEGSSSEDEDTESSSVSEDGDSSEMDDEDCERRRMECLDEMSNLEKQFTDLK 76
E+++ A+NE + +E++ S + + + E ++ + + + E + ++ L+
Sbjct: 309 ELQLRQAQNENARLVEENSRLSGRATEKEQVEWENAELRGQLLGVTQERDSALRKSQGLQ 368
Query: 77 DQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVAGIYRELCLESVKNKYE 136
+L E L QV ++EV A ++ +++ + A + E V+ +
Sbjct: 369 SKL--ESLEQVLKHMREV------------AQRRQQLEVEHEQARLSLREKQEEVRRLQQ 414
Query: 137 CEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSELWNDELQSRKKRKDP 195
+ +A R+H E LL T+ S ++ ++R LEE S L ELQ+ + P
Sbjct: 415 AQAEAQREH-EGAVQLLESTLDS-MQARVRELEEQCRSQTEQFSLLAQELQAFRLHPGP 471
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.129 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,902,258
Number of Sequences: 37866
Number of extensions: 594681
Number of successful extensions: 4880
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 344
Number of HSP's that attempted gapping in prelim test: 3589
Number of HSP's gapped (non-prelim): 1352
length of query: 323
length of database: 18,247,518
effective HSP length: 102
effective length of query: 221
effective length of database: 14,385,186
effective search space: 3179126106
effective search space used: 3179126106
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.