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Search of human proteins with 33942072
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33942072 trinucleotide repeat containing 5 [Homo sapiens]
(278 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33942072 trinucleotide repeat containing 5 [Homo sapiens] 561 e-160
gi|22749479 canopy 4 homolog [Homo sapiens] 199 2e-51
gi|205360958 cysteine-rich with EGF-like domains 2 isoform b [Ho... 39 0.005
gi|205360956 cysteine-rich with EGF-like domains 2 isoform a [Ho... 39 0.005
gi|7657176 canopy 2 homolog [Homo sapiens] 37 0.025
gi|29294627 PTPRF interacting protein binding protein 1 isoform ... 36 0.042
gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo sa... 35 0.072
gi|75750468 spectrin domain with coiled-coils 1 NSP5a3a [Homo sa... 35 0.072
gi|75750472 spectrin domain with coiled-coils 1 NSP5b3b [Homo sa... 35 0.072
gi|75750466 spectrin domain with coiled-coils 1 NSP5b3a [Homo sa... 35 0.072
gi|115511036 alpha-kinase 3 [Homo sapiens] 34 0.16
gi|139394604 bromo adjacent homology domain containing 1 [Homo s... 33 0.27
gi|46488919 astrotactin 2 isoform c [Homo sapiens] 33 0.36
gi|46488917 astrotactin 2 isoform b [Homo sapiens] 33 0.36
gi|46488915 astrotactin 2 isoform a [Homo sapiens] 33 0.36
gi|9256600 protocadherin alpha subfamily C, 2 isoform 1 precurso... 33 0.36
gi|14165431 protocadherin alpha subfamily C, 2 isoform 2 precurs... 33 0.36
gi|19923632 Kazal-type serine peptidase inhibitor domain 1 precu... 32 0.61
gi|194272142 myosin IXB isoform 2 [Homo sapiens] 31 1.0
gi|33356170 myosin IXB isoform 1 [Homo sapiens] 31 1.0
gi|63176611 modulator of estrogen induced transcription isoform ... 31 1.4
gi|214831834 transmembrane protein 169 [Homo sapiens] 31 1.4
gi|19923913 transmembrane protein 169 [Homo sapiens] 31 1.4
gi|214831799 transmembrane protein 169 [Homo sapiens] 31 1.4
gi|214831780 transmembrane protein 169 [Homo sapiens] 31 1.4
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 31 1.4
gi|7657441 PDGFA associated protein 1 [Homo sapiens] 31 1.4
gi|49640011 tetratricopeptide repeat domain 3 [Homo sapiens] 31 1.4
gi|49640009 tetratricopeptide repeat domain 3 [Homo sapiens] 31 1.4
gi|7705320 hepatoma-derived growth factor, related protein 3 [Ho... 30 1.8
>gi|33942072 trinucleotide repeat containing 5 [Homo sapiens]
Length = 278
Score = 561 bits (1445), Expect = e-160
Identities = 278/278 (100%), Positives = 278/278 (100%)
Query: 1 MDSMPEPASRCLLLLPLLLLLLLLLPAPELGPSQAGAEENDWVRLPSKCEVCKYVAVELK 60
MDSMPEPASRCLLLLPLLLLLLLLLPAPELGPSQAGAEENDWVRLPSKCEVCKYVAVELK
Sbjct: 1 MDSMPEPASRCLLLLPLLLLLLLLLPAPELGPSQAGAEENDWVRLPSKCEVCKYVAVELK 60
Query: 61 SAFEETGKTKEVIGTGYGILDQKASGVKYTKSDLRLIEVTETICKRLLDYSLHKERTGSN 120
SAFEETGKTKEVIGTGYGILDQKASGVKYTKSDLRLIEVTETICKRLLDYSLHKERTGSN
Sbjct: 61 SAFEETGKTKEVIGTGYGILDQKASGVKYTKSDLRLIEVTETICKRLLDYSLHKERTGSN 120
Query: 121 RFAKGMSETFETLHNLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIEDW 180
RFAKGMSETFETLHNLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIEDW
Sbjct: 121 RFAKGMSETFETLHNLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIEDW 180
Query: 181 YRNHQEEDLTEFLCANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRS 240
YRNHQEEDLTEFLCANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRS
Sbjct: 181 YRNHQEEDLTEFLCANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRS 240
Query: 241 SSSKQRKELGGLEGDPSPEEDEGIQKASPLTHSPPDEL 278
SSSKQRKELGGLEGDPSPEEDEGIQKASPLTHSPPDEL
Sbjct: 241 SSSKQRKELGGLEGDPSPEEDEGIQKASPLTHSPPDEL 278
>gi|22749479 canopy 4 homolog [Homo sapiens]
Length = 248
Score = 199 bits (507), Expect = 2e-51
Identities = 101/225 (44%), Positives = 144/225 (64%), Gaps = 6/225 (2%)
Query: 19 LLLLLLLPAPELGPSQAGAEENDWVRLPSKCEVCKYVAVELKSAFEETGKTKEVIGTGYG 78
+LL L L E E++D RLPSKCEVCK ++ EL++ TG+++EV+ G
Sbjct: 8 ILLFLFLAVHEAWAGMLKEEDDDTERLPSKCEVCKLLSTELQAELSRTGRSREVLELGQ- 66
Query: 79 ILD--QKASGVKYTKSDLRLIEVTETICKRLLDYSLHKERTGSNRFAKGMSETFETLHNL 136
+LD ++ V Y+ S+ RL E E +C+R+LDYS+H ER GS R+AKG S+T TL L
Sbjct: 67 VLDTGKRKRHVPYSVSETRLEEALENLCERILDYSVHAERKGSLRYAKGQSQTMATLKGL 126
Query: 137 VHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTEFLCAN 196
V KGVKV + IP ELW+E S EV LKKQC+ ++EEFE+++ DWY +HQE+ L FLC
Sbjct: 127 VQKGVKVDLGIPLELWDEPSVEVTYLKKQCETMLEEFEDIVGDWYFHHQEQPLQNFLCEG 186
Query: 197 HVLKGKDTSCLAEQWSGKK---GDTAALGGKKSKKKSSRAKAAGG 238
HVL +T+CL E W+GK+ G+ G ++ +++ + GG
Sbjct: 187 HVLPAAETACLQETWTGKEITDGEEKTEGEEEQEEEEEEEEEEGG 231
>gi|205360958 cysteine-rich with EGF-like domains 2 isoform b [Homo
sapiens]
Length = 353
Score = 38.9 bits (89), Expect = 0.005
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 15/91 (16%)
Query: 15 LPLLLLLLLLLPAPELGPSQAGAEENDWVRLPSKCEVCKYVAVELKSAFEETGKTKEVIG 74
L LL LLLLL PAPE + P+ C C+ + + +T K G
Sbjct: 9 LGLLPLLLLLPPAPEAA------------KKPTPCHRCRGLVDKFNQGMVDTAKKN--FG 54
Query: 75 TGYGILDQKASGVKYTKSDLRLIEVTETICK 105
G ++K KY S++RL+E+ E +C+
Sbjct: 55 GGNTAWEEKTLS-KYESSEIRLLEILEGLCE 84
>gi|205360956 cysteine-rich with EGF-like domains 2 isoform a [Homo
sapiens]
Length = 402
Score = 38.9 bits (89), Expect = 0.005
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 15/91 (16%)
Query: 15 LPLLLLLLLLLPAPELGPSQAGAEENDWVRLPSKCEVCKYVAVELKSAFEETGKTKEVIG 74
L LL LLLLL PAPE + P+ C C+ + + +T K G
Sbjct: 9 LGLLPLLLLLPPAPEAA------------KKPTPCHRCRGLVDKFNQGMVDTAKKN--FG 54
Query: 75 TGYGILDQKASGVKYTKSDLRLIEVTETICK 105
G ++K KY S++RL+E+ E +C+
Sbjct: 55 GGNTAWEEKTLS-KYESSEIRLLEILEGLCE 84
>gi|7657176 canopy 2 homolog [Homo sapiens]
Length = 182
Score = 36.6 bits (83), Expect = 0.025
Identities = 32/151 (21%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 49 CEVCKYVAVELKSAFEETGKTKEVIGTGYGIL---DQKASGVKYTKSDLRLIEVTETICK 105
C C+ + EL+ + K + + I Q V Y +S+ L E+ E IC
Sbjct: 28 CGACRALVDELEWEIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEICD 87
Query: 106 RLLDYSLHKE-RTGSNRFAKGMSETFETLHNLVHKGVKVVMDIPYELWNETSAEVADLKK 164
R+ +Y + T + + + E+ L +G+++ DI LK
Sbjct: 88 RMKEYGEQIDPSTHRKNYVRVVGRNGES-SELDLQGIRIDSDIS-----------GTLKF 135
Query: 165 QCDVLVEEFEEVIEDWYRNHQEEDLTEFLCA 195
C+ +VEE+E+ + +++ + + +++ + LC+
Sbjct: 136 ACESIVEEYEDELIEFF-SREADNVKDKLCS 165
>gi|29294627 PTPRF interacting protein binding protein 1 isoform 1
[Homo sapiens]
Length = 1005
Score = 35.8 bits (81), Expect = 0.042
Identities = 37/124 (29%), Positives = 49/124 (39%), Gaps = 21/124 (16%)
Query: 154 ETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTEFLCANHVLKGKDTSCLAEQWSG 213
E + EV +KK + L+ EE ++ + EDL + C N K +DT LA+ G
Sbjct: 280 EKNIEVQKMKKAVESLMAANEE------KDRKIEDLRQ--CLNRYKKMQDTVVLAQGKKG 331
Query: 214 KKGDTAALGGKKSKKKSSRAKAAGGRSSSSKQRKELGGLEGDPSPEEDEGIQKASPLTHS 273
K G+ L S SS A G LE PSP G P S
Sbjct: 332 KDGEYEEL--LNSSSISSLLDAQG-----------FSDLEKSPSPTPVMGSPSCDPFNTS 378
Query: 274 PPDE 277
P+E
Sbjct: 379 VPEE 382
>gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo
sapiens]
Length = 987
Score = 35.0 bits (79), Expect = 0.072
Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 46/192 (23%)
Query: 83 KASG-VKYTKSDLRLIEVTETICKRLLDYS----------LHKERTGSNRFAKGMSETFE 131
KA+G +K+ S L +E + K + D+ L ++ + S+ K M ET
Sbjct: 526 KANGEIKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIF 585
Query: 132 TLHNLV--HKGVKVVMDIPYELWNETSAEV-------ADLKKQCDVLVEEFEEVIEDWYR 182
L + V H+ VK+ + +L +E + V +DL++Q L ++ +E E+W R
Sbjct: 586 ELEDQVEQHRAVKLHNN---QLISELESSVIKLEEQKSDLERQLKTLTKQMKEETEEW-R 641
Query: 183 NHQEEDLTEFLCANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSS 242
Q + T + AN D C A+Q + ++ + K +
Sbjct: 642 RFQADLQTAVVVAN------DIKCEAQQ----------------ELRTVKRKLLEEEEKN 679
Query: 243 SKQRKELGGLEG 254
++ +KELG ++G
Sbjct: 680 ARLQKELGDVQG 691
>gi|75750468 spectrin domain with coiled-coils 1 NSP5a3a [Homo
sapiens]
Length = 709
Score = 35.0 bits (79), Expect = 0.072
Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 46/192 (23%)
Query: 83 KASG-VKYTKSDLRLIEVTETICKRLLDYS----------LHKERTGSNRFAKGMSETFE 131
KA+G +K+ S L +E + K + D+ L ++ + S+ K M ET
Sbjct: 526 KANGEIKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIF 585
Query: 132 TLHNLV--HKGVKVVMDIPYELWNETSAEV-------ADLKKQCDVLVEEFEEVIEDWYR 182
L + V H+ VK+ + +L +E + V +DL++Q L ++ +E E+W R
Sbjct: 586 ELEDQVEQHRAVKLHNN---QLISELESSVIKLEEQKSDLERQLKTLTKQMKEETEEW-R 641
Query: 183 NHQEEDLTEFLCANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSS 242
Q + T + AN D C A+Q + ++ + K +
Sbjct: 642 RFQADLQTAVVVAN------DIKCEAQQ----------------ELRTVKRKLLEEEEKN 679
Query: 243 SKQRKELGGLEG 254
++ +KELG ++G
Sbjct: 680 ARLQKELGDVQG 691
>gi|75750472 spectrin domain with coiled-coils 1 NSP5b3b [Homo
sapiens]
Length = 1068
Score = 35.0 bits (79), Expect = 0.072
Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 46/192 (23%)
Query: 83 KASG-VKYTKSDLRLIEVTETICKRLLDYS----------LHKERTGSNRFAKGMSETFE 131
KA+G +K+ S L +E + K + D+ L ++ + S+ K M ET
Sbjct: 607 KANGEIKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIF 666
Query: 132 TLHNLV--HKGVKVVMDIPYELWNETSAEV-------ADLKKQCDVLVEEFEEVIEDWYR 182
L + V H+ VK+ + +L +E + V +DL++Q L ++ +E E+W R
Sbjct: 667 ELEDQVEQHRAVKLHNN---QLISELESSVIKLEEQKSDLERQLKTLTKQMKEETEEW-R 722
Query: 183 NHQEEDLTEFLCANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSS 242
Q + T + AN D C A+Q + ++ + K +
Sbjct: 723 RFQADLQTAVVVAN------DIKCEAQQ----------------ELRTVKRKLLEEEEKN 760
Query: 243 SKQRKELGGLEG 254
++ +KELG ++G
Sbjct: 761 ARLQKELGDVQG 772
>gi|75750466 spectrin domain with coiled-coils 1 NSP5b3a [Homo
sapiens]
Length = 790
Score = 35.0 bits (79), Expect = 0.072
Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 46/192 (23%)
Query: 83 KASG-VKYTKSDLRLIEVTETICKRLLDYS----------LHKERTGSNRFAKGMSETFE 131
KA+G +K+ S L +E + K + D+ L ++ + S+ K M ET
Sbjct: 607 KANGEIKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIF 666
Query: 132 TLHNLV--HKGVKVVMDIPYELWNETSAEV-------ADLKKQCDVLVEEFEEVIEDWYR 182
L + V H+ VK+ + +L +E + V +DL++Q L ++ +E E+W R
Sbjct: 667 ELEDQVEQHRAVKLHNN---QLISELESSVIKLEEQKSDLERQLKTLTKQMKEETEEW-R 722
Query: 183 NHQEEDLTEFLCANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSS 242
Q + T + AN D C A+Q + ++ + K +
Sbjct: 723 RFQADLQTAVVVAN------DIKCEAQQ----------------ELRTVKRKLLEEEEKN 760
Query: 243 SKQRKELGGLEG 254
++ +KELG ++G
Sbjct: 761 ARLQKELGDVQG 772
>gi|115511036 alpha-kinase 3 [Homo sapiens]
Length = 1907
Score = 33.9 bits (76), Expect = 0.16
Identities = 52/227 (22%), Positives = 94/227 (41%), Gaps = 29/227 (12%)
Query: 50 EVCKYVAVELKSAFEETGKTKEVIGTGYGILDQKASGVKYTKSDLRLIEVTETICKRLLD 109
E CK A E ++A G+ E+I ++ + A+ + Y + L + E+ C R
Sbjct: 1682 EYCKIFAAEARAA-PGFGEVPEIIPLY--LIYRPANNIPYATLEEDLGKPLESYCSREWG 1738
Query: 110 YSLHKERTGSNRFAKGMSETFETLHNLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVL 169
+ +GS+ A +TF+ G +V D+ W T ++A + L
Sbjct: 1739 CAEAPTASGSSE-AMQKCQTFQHWLYQWTNGSFLVTDLAGVDWKMTDVQIATKLRGYQGL 1797
Query: 170 VEE-FEEVIEDWYRNHQEEDLTEFLCANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKK 228
E F +++ + +HQ E L + KG AA ++K
Sbjct: 1798 KESCFPALLDRFASSHQCNAYCELLGLTPL----------------KGPEAA--HPQAKA 1839
Query: 229 KSSRAKAAGGRSSSSKQRKELGGLEGDPSPEEDEGIQKASPLTHSPP 275
K S++ +AG + S + + GL PSP +G +K++P + + P
Sbjct: 1840 KGSKSPSAGRKGSQLSPQPQKKGL---PSP---QGTRKSAPSSKATP 1880
>gi|139394604 bromo adjacent homology domain containing 1 [Homo
sapiens]
Length = 780
Score = 33.1 bits (74), Expect = 0.27
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 196 NHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSSSKQRKELGGLEG- 254
N +L+ +DTS LA + GD + R +A GG SSS K+R LG L G
Sbjct: 129 NLLLEREDTSSLAGTRRSRAGDP--------HRSRDRDRATGGWSSS-KKRPRLGDLGGG 179
Query: 255 ----DPSPEEDEG 263
P P DEG
Sbjct: 180 SRDLSPEPAPDEG 192
>gi|46488919 astrotactin 2 isoform c [Homo sapiens]
Length = 1339
Score = 32.7 bits (73), Expect = 0.36
Identities = 35/96 (36%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 14 LLPLLLLLLLLLPAPEL--GPSQAGAEENDWVRLPSKCEVCKYVAVELKSAFEET----- 66
LLPLLLL LLLLP P L G + A + E D S C + K V V A E+
Sbjct: 31 LLPLLLLFLLLLPPPPLLAGATAAASREPD-----SPCRL-KTVTVSTLPALRESDIGWS 84
Query: 67 -GKTKEVIGTGYGILDQKAS----GVKYTKSDLRLI 97
+ GTG G AS G T ++ RL+
Sbjct: 85 GARAGAGAGTGAGAAAAAASPGSPGSAGTAAESRLL 120
>gi|46488917 astrotactin 2 isoform b [Homo sapiens]
Length = 1335
Score = 32.7 bits (73), Expect = 0.36
Identities = 35/96 (36%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 14 LLPLLLLLLLLLPAPEL--GPSQAGAEENDWVRLPSKCEVCKYVAVELKSAFEET----- 66
LLPLLLL LLLLP P L G + A + E D S C + K V V A E+
Sbjct: 31 LLPLLLLFLLLLPPPPLLAGATAAASREPD-----SPCRL-KTVTVSTLPALRESDIGWS 84
Query: 67 -GKTKEVIGTGYGILDQKAS----GVKYTKSDLRLI 97
+ GTG G AS G T ++ RL+
Sbjct: 85 GARAGAGAGTGAGAAAAAASPGSPGSAGTAAESRLL 120
>gi|46488915 astrotactin 2 isoform a [Homo sapiens]
Length = 1288
Score = 32.7 bits (73), Expect = 0.36
Identities = 35/96 (36%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 14 LLPLLLLLLLLLPAPEL--GPSQAGAEENDWVRLPSKCEVCKYVAVELKSAFEET----- 66
LLPLLLL LLLLP P L G + A + E D S C + K V V A E+
Sbjct: 31 LLPLLLLFLLLLPPPPLLAGATAAASREPD-----SPCRL-KTVTVSTLPALRESDIGWS 84
Query: 67 -GKTKEVIGTGYGILDQKAS----GVKYTKSDLRLI 97
+ GTG G AS G T ++ RL+
Sbjct: 85 GARAGAGAGTGAGAAAAAASPGSPGSAGTAAESRLL 120
>gi|9256600 protocadherin alpha subfamily C, 2 isoform 1 precursor
[Homo sapiens]
Length = 1007
Score = 32.7 bits (73), Expect = 0.36
Identities = 16/17 (94%), Positives = 16/17 (94%)
Query: 12 LLLLPLLLLLLLLLPAP 28
LLLLPLLLLLLLLLP P
Sbjct: 23 LLLLPLLLLLLLLLPGP 39
>gi|14165431 protocadherin alpha subfamily C, 2 isoform 2
precursor [Homo sapiens]
Length = 884
Score = 32.7 bits (73), Expect = 0.36
Identities = 16/17 (94%), Positives = 16/17 (94%)
Query: 12 LLLLPLLLLLLLLLPAP 28
LLLLPLLLLLLLLLP P
Sbjct: 23 LLLLPLLLLLLLLLPGP 39
>gi|19923632 Kazal-type serine peptidase inhibitor domain 1
precursor [Homo sapiens]
Length = 304
Score = 32.0 bits (71), Expect = 0.61
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 4 MPEPASRCLLLLPLLLLLLLLLPAPELGPSQAGAEE---NDWVRLPSKCEVC 52
+P P L LP+LLLLL++L P G + + W+RL ++ E C
Sbjct: 2 LPPPRPAAALALPVLLLLLVVLTPPPTGARPSPGPDYLRRGWMRLLAEGEGC 53
>gi|194272142 myosin IXB isoform 2 [Homo sapiens]
Length = 2022
Score = 31.2 bits (69), Expect = 1.0
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 25/113 (22%)
Query: 180 WYRN---HQEEDLTEF--LCANHVLKGKDTSCLAEQWSGKKGDTAAL-GGKKSKKKSSRA 233
W R HQ++ + LC H+ + + ++E+ ++ + AL + ++ +
Sbjct: 1016 WQRKLYRHQKQSIIRLQSLCRGHLQRKSFSQMISEKQKAEEKEREALEAARAGAEEGGQG 1075
Query: 234 KAAGGRSSSSKQRKELGGLEGDPSPEEDEG-------IQKA--SPLTHSPPDE 277
+AAGG+ + E P P ED G +Q + SPL HS P++
Sbjct: 1076 QAAGGQQVA----------EQGPEPAEDGGHLASEPEVQPSDRSPLEHSSPEK 1118
>gi|33356170 myosin IXB isoform 1 [Homo sapiens]
Length = 2157
Score = 31.2 bits (69), Expect = 1.0
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 25/113 (22%)
Query: 180 WYRN---HQEEDLTEF--LCANHVLKGKDTSCLAEQWSGKKGDTAAL-GGKKSKKKSSRA 233
W R HQ++ + LC H+ + + ++E+ ++ + AL + ++ +
Sbjct: 1016 WQRKLYRHQKQSIIRLQSLCRGHLQRKSFSQMISEKQKAEEKEREALEAARAGAEEGGQG 1075
Query: 234 KAAGGRSSSSKQRKELGGLEGDPSPEEDEG-------IQKA--SPLTHSPPDE 277
+AAGG+ + E P P ED G +Q + SPL HS P++
Sbjct: 1076 QAAGGQQVA----------EQGPEPAEDGGHLASEPEVQPSDRSPLEHSSPEK 1118
>gi|63176611 modulator of estrogen induced transcription isoform a
[Homo sapiens]
Length = 1034
Score = 30.8 bits (68), Expect = 1.4
Identities = 50/204 (24%), Positives = 82/204 (40%), Gaps = 27/204 (13%)
Query: 64 EETGKTKEVIGTGYGILDQKASGVKYTKSDLRLIEVTETICKRLLDYSLHKERTGSNRFA 123
EE K++ G+G G Q+ S K S+ L E T + + ++ KE N
Sbjct: 190 EEEENEKDIAGSGDGT--QEVS--KPLPSEGSLAEADHTAHEEMEAHTTVKEAEDDNISV 245
Query: 124 KGMSETFETLH----NLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIED 179
+E TL +L+ G V + T +E + K D + + E+ +D
Sbjct: 246 TIQAEDAITLDFDGDDLLETGKNVKI---------TDSEASKPKDGQDAIAQSPEKESKD 296
Query: 180 WYRNHQEEDLTEFLCANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGR 239
+ N +D + C +KG A + S KK ++ KK S A+G
Sbjct: 297 YEMNANHKDGKKEDC----VKGDPVEKEARE-SSKKAESGDKEKDTLKKGPSSTGASGQA 351
Query: 240 SSSSKQRKELGGLEGDPSPEEDEG 263
SSSK+ K + S ++D+G
Sbjct: 352 KSSSKESK-----DSKTSSKDDKG 370
>gi|214831834 transmembrane protein 169 [Homo sapiens]
Length = 297
Score = 30.8 bits (68), Expect = 1.4
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 219 AALGGKKSKKKSSRAKAAG-GRSSSSKQRKELGGLEGDPSPEEDEG 263
+ +G +K K+K SR ++ RS + K +E G EG P+E+EG
Sbjct: 35 STMGHRKKKRKESRPESIIIYRSDNEKTDEEPGESEGGDQPKEEEG 80
>gi|19923913 transmembrane protein 169 [Homo sapiens]
Length = 297
Score = 30.8 bits (68), Expect = 1.4
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 219 AALGGKKSKKKSSRAKAAG-GRSSSSKQRKELGGLEGDPSPEEDEG 263
+ +G +K K+K SR ++ RS + K +E G EG P+E+EG
Sbjct: 35 STMGHRKKKRKESRPESIIIYRSDNEKTDEEPGESEGGDQPKEEEG 80
>gi|214831799 transmembrane protein 169 [Homo sapiens]
Length = 297
Score = 30.8 bits (68), Expect = 1.4
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 219 AALGGKKSKKKSSRAKAAG-GRSSSSKQRKELGGLEGDPSPEEDEG 263
+ +G +K K+K SR ++ RS + K +E G EG P+E+EG
Sbjct: 35 STMGHRKKKRKESRPESIIIYRSDNEKTDEEPGESEGGDQPKEEEG 80
>gi|214831780 transmembrane protein 169 [Homo sapiens]
Length = 297
Score = 30.8 bits (68), Expect = 1.4
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 219 AALGGKKSKKKSSRAKAAG-GRSSSSKQRKELGGLEGDPSPEEDEG 263
+ +G +K K+K SR ++ RS + K +E G EG P+E+EG
Sbjct: 35 STMGHRKKKRKESRPESIIIYRSDNEKTDEEPGESEGGDQPKEEEG 80
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 30.8 bits (68), Expect = 1.4
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 202 KDTS--CLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSSSKQRKELGGLEGDPSPE 259
KDTS C A G+K TA ++SK+K+ R + SSSS S
Sbjct: 153 KDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSS 212
Query: 260 ED 261
D
Sbjct: 213 SD 214
>gi|7657441 PDGFA associated protein 1 [Homo sapiens]
Length = 181
Score = 30.8 bits (68), Expect = 1.4
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 208 AEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSSSKQRKELGGLEGDPSPEEDEGIQK 266
A Q++ + A L +K K + + GG ++ +KE L+ D S +E++ Q+
Sbjct: 14 ARQYTSPEEIDAQLQAEKQKAREEEEQKEGGDGAAGDPKKEKKSLDSDESEDEEDDYQQ 72
>gi|49640011 tetratricopeptide repeat domain 3 [Homo sapiens]
Length = 2025
Score = 30.8 bits (68), Expect = 1.4
Identities = 31/153 (20%), Positives = 66/153 (43%), Gaps = 24/153 (15%)
Query: 135 NLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYR---------NHQ 185
N++H+ V PY + E E++ ++K+ VL ++ +EV E++ +
Sbjct: 1471 NIIHQEVNTE---PYNPFEERQGEISRIEKEHQVLQDQLQEVYENYEQIKLKGLEETRDL 1527
Query: 186 EEDLTEFLCANHVLKG------KDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGR 239
EE L L N + K +D ++W +K + + + KS + K
Sbjct: 1528 EEKLKRHLEENKISKTELDWFLQDLEREIKKWQQEKKEI------QERLKSLKKKIKKVS 1581
Query: 240 SSSSKQRKELGGLEGDPSPEEDEGIQKASPLTH 272
++S ++ G E + D+ ++ ++ LT+
Sbjct: 1582 NASEMYTQKNDGKEKEHELHLDQSLEISNTLTN 1614
>gi|49640009 tetratricopeptide repeat domain 3 [Homo sapiens]
Length = 2025
Score = 30.8 bits (68), Expect = 1.4
Identities = 31/153 (20%), Positives = 66/153 (43%), Gaps = 24/153 (15%)
Query: 135 NLVHKGVKVVMDIPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYR---------NHQ 185
N++H+ V PY + E E++ ++K+ VL ++ +EV E++ +
Sbjct: 1471 NIIHQEVNTE---PYNPFEERQGEISRIEKEHQVLQDQLQEVYENYEQIKLKGLEETRDL 1527
Query: 186 EEDLTEFLCANHVLKG------KDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGR 239
EE L L N + K +D ++W +K + + + KS + K
Sbjct: 1528 EEKLKRHLEENKISKTELDWFLQDLEREIKKWQQEKKEI------QERLKSLKKKIKKVS 1581
Query: 240 SSSSKQRKELGGLEGDPSPEEDEGIQKASPLTH 272
++S ++ G E + D+ ++ ++ LT+
Sbjct: 1582 NASEMYTQKNDGKEKEHELHLDQSLEISNTLTN 1614
>gi|7705320 hepatoma-derived growth factor, related protein 3 [Homo
sapiens]
Length = 203
Score = 30.4 bits (67), Expect = 1.8
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 200 KGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSSSKQRKELGGLEGDPSPE 259
+G +T+ + + G + + G +K++K S+ K + SSKQ ++ G E D +
Sbjct: 113 EGGNTADASSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCK 172
Query: 260 EDE 262
E+E
Sbjct: 173 EEE 175
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.131 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,746,160
Number of Sequences: 37866
Number of extensions: 550220
Number of successful extensions: 2635
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 2524
Number of HSP's gapped (non-prelim): 154
length of query: 278
length of database: 18,247,518
effective HSP length: 101
effective length of query: 177
effective length of database: 14,423,052
effective search space: 2552880204
effective search space used: 2552880204
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.