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Search of human proteins with 33504571
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33504571 sorting nexin 20 isoform 1 [Homo sapiens]
(316 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33504571 sorting nexin 20 isoform 1 [Homo sapiens] 640 0.0
gi|23503255 sorting nexin 20 isoform 2 [Homo sapiens] 203 1e-52
gi|222352102 sorting nexin 20 isoform 3 [Homo sapiens] 203 2e-52
gi|15553099 sorting nexin 21 isoform a [Homo sapiens] 158 7e-39
gi|23510350 sorting nexin 21 isoform b [Homo sapiens] 69 5e-12
gi|46370089 sorting nexin 15 isoform B [Homo sapiens] 47 3e-05
gi|22547191 sorting nexin 15 isoform A [Homo sapiens] 47 3e-05
gi|7662655 SBBI31 protein [Homo sapiens] 45 1e-04
gi|41327691 kinesin-like motor protein C20orf23 [Homo sapiens] 42 7e-04
gi|31543452 PX domain containing serine/threonine kinase [Homo s... 40 0.002
gi|31742501 sorting nexin family member 27 [Homo sapiens] 40 0.002
gi|19923723 ribosomal protein S6 kinase, 52kDa, polypeptide 1 is... 38 0.010
gi|7706706 sorting nexin 9 [Homo sapiens] 38 0.013
gi|23238244 sorting nexin 16 isoform a [Homo sapiens] 37 0.018
gi|23238246 sorting nexin 16 isoform a [Homo sapiens] 37 0.018
gi|23111055 sorting nexin 7 isoform b [Homo sapiens] 37 0.023
gi|194294540 sorting nexin 7 isoform a [Homo sapiens] 37 0.023
gi|154091028 sorting nexin 29 [Homo sapiens] 37 0.023
gi|209915591 ribosomal protein S6 kinase, 52kDa, polypeptide 1 i... 35 0.087
gi|71772838 sorting nexin 22 [Homo sapiens] 35 0.087
gi|224177511 sorting nexin 18 isoform c [Homo sapiens] 34 0.19
gi|157057545 sorting nexin 18 isoform a [Homo sapiens] 34 0.19
gi|157057543 sorting nexin 18 isoform b [Homo sapiens] 34 0.19
gi|111118961 sorting nexin 21 isoform d [Homo sapiens] 33 0.25
gi|23111026 sorting nexin 11 [Homo sapiens] 33 0.33
gi|23111028 sorting nexin 11 [Homo sapiens] 33 0.33
gi|24797143 sorting nexin 14 isoform b [Homo sapiens] 33 0.43
gi|24797145 sorting nexin 14 isoform a [Homo sapiens] 33 0.43
gi|154759259 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ... 33 0.43
gi|194595509 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ... 33 0.43
>gi|33504571 sorting nexin 20 isoform 1 [Homo sapiens]
Length = 316
Score = 640 bits (1650), Expect = 0.0
Identities = 316/316 (100%), Positives = 316/316 (100%)
Query: 1 MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL 60
MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL
Sbjct: 1 MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL 60
Query: 61 QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFVVYQIIVIQTGSFDNNKAVLERRYSDF 120
QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFVVYQIIVIQTGSFDNNKAVLERRYSDF
Sbjct: 61 QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFVVYQIIVIQTGSFDNNKAVLERRYSDF 120
Query: 121 AKLQKALLKTFREEIEDVEFPRKHLTGNFAEEMICERRRALQEYLGLLYAIRCVRRSREF 180
AKLQKALLKTFREEIEDVEFPRKHLTGNFAEEMICERRRALQEYLGLLYAIRCVRRSREF
Sbjct: 121 AKLQKALLKTFREEIEDVEFPRKHLTGNFAEEMICERRRALQEYLGLLYAIRCVRRSREF 180
Query: 181 LDFLTRPELREAFGCLRAGQYPRALELLLRVLPLQEKLTAHCPAAAVPALCAVLLCHRDL 240
LDFLTRPELREAFGCLRAGQYPRALELLLRVLPLQEKLTAHCPAAAVPALCAVLLCHRDL
Sbjct: 181 LDFLTRPELREAFGCLRAGQYPRALELLLRVLPLQEKLTAHCPAAAVPALCAVLLCHRDL 240
Query: 241 DRPAEAFAAGERALQRLQAREGHRYYAPLLDAMVRLAYALGKDFVTLQERLEESQLRRPT 300
DRPAEAFAAGERALQRLQAREGHRYYAPLLDAMVRLAYALGKDFVTLQERLEESQLRRPT
Sbjct: 241 DRPAEAFAAGERALQRLQAREGHRYYAPLLDAMVRLAYALGKDFVTLQERLEESQLRRPT 300
Query: 301 PRGITLKELTVREYLH 316
PRGITLKELTVREYLH
Sbjct: 301 PRGITLKELTVREYLH 316
>gi|23503255 sorting nexin 20 isoform 2 [Homo sapiens]
Length = 129
Score = 203 bits (517), Expect = 1e-52
Identities = 94/95 (98%), Positives = 95/95 (100%)
Query: 1 MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL 60
MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL
Sbjct: 1 MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL 60
Query: 61 QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFVV 95
QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFV+
Sbjct: 61 QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFVM 95
>gi|222352102 sorting nexin 20 isoform 3 [Homo sapiens]
Length = 102
Score = 203 bits (516), Expect = 2e-52
Identities = 94/94 (100%), Positives = 94/94 (100%)
Query: 1 MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL 60
MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL
Sbjct: 1 MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL 60
Query: 61 QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFV 94
QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFV
Sbjct: 61 QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFV 94
>gi|15553099 sorting nexin 21 isoform a [Homo sapiens]
Length = 373
Score = 158 bits (399), Expect = 7e-39
Identities = 103/281 (36%), Positives = 145/281 (51%), Gaps = 10/281 (3%)
Query: 37 PGPDGHLDTHSGLSSNSSMTTRELQQYWQNQKCRWKHVKLLFEIASARIEERKVSKFVVY 96
P PDG S + R+LQ +W+ + +LLFE+ SA + + SK+V+Y
Sbjct: 100 PPPDGQW--------GSQLLARQLQDFWKKSRNTLAPQRLLFEVTSANVVKDPPSKYVLY 151
Query: 97 QIIVIQTGSFDNNKAVLERRYSDFAKLQKALLKTFREEIEDVEFPRKHLTGNFAEEMICE 156
+ VI G D A + RRYSDF +L + L + FR + + FPRK L NF E I
Sbjct: 152 TLAVIGPGPPDCQPAQISRRYSDFERLHRNLQRQFRGPMAAISFPRKRLRRNFTAETIAR 211
Query: 157 RRRALQEYLGLLYAIRCVRRSREFLDFLTRPELREAFGCLRAGQYPRALELLLRVLPLQE 216
R RA +++LG L A+ +R + + DF PELR A G Y AL L LQ
Sbjct: 212 RSRAFEQFLGHLQAVPELRHAPDLQDFFVLPELRRAQSLTCTGLYREALALWANAWQLQA 271
Query: 217 KL-TAHCPAAAVPALCAVLLCHRDLDRPAEAFAAGERALQRLQAREGHRYYAPLLDAMVR 275
+L T P + L + +CH++L+ P EA A E+ALQ L + H AP L+A VR
Sbjct: 272 QLGTPSGPDRPLLTLAGLAVCHQELEDPGEARACCEKALQLLGDKSLHPLLAPFLEAHVR 331
Query: 276 LAYALGKDFVTLQERLEESQLRRPTPR-GITLKELTVREYL 315
L++ LG D + RL+ Q TP +LKEL ++E L
Sbjct: 332 LSWRLGLDKRQSEARLQALQEAGLTPTPPPSLKELLIKEVL 372
>gi|23510350 sorting nexin 21 isoform b [Homo sapiens]
Length = 199
Score = 68.9 bits (167), Expect = 5e-12
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 37 PGPDGHLDTHSGLSSNSSMTTRELQQYWQNQKCRWKHVKLLFEIASARIEERKVSKFVVY 96
P PDG S + R+LQ +W+ + +LLFE+ SA + + SK+V+Y
Sbjct: 100 PPPDGQW--------GSQLLARQLQDFWKKSRNTLAPQRLLFEVTSANVVKDPPSKYVLY 151
Query: 97 QIIVIQTGSFDNNKAVLERRYSDFAKLQKALLKTFREEIEDVEFPRKH 144
+ VI G D A + RRYSDF +L + L + FR + + FP+ H
Sbjct: 152 TLAVIGPGPPDCQPAQISRRYSDFERLHRNLQRQFRGPMAAISFPQSH 199
>gi|46370089 sorting nexin 15 isoform B [Homo sapiens]
Length = 256
Score = 46.6 bits (109), Expect = 3e-05
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 18/142 (12%)
Query: 78 FEIASARIEERKVSKFVVYQIIVIQTGSFDNNKAVLERRYSDFAKLQKALLKTFREEIED 137
+ ++ R + +++ V + + D + V+ +RYSDF KL L T R
Sbjct: 13 YTVSDPRTHPKGYTEYKVTAQFISKKDPEDVKEVVVWKRYSDFRKLHGDLAYTHRNLFRR 72
Query: 138 VE----FPRKHLTGNFAEEMICERRRALQEYLGLLYAIRCVRRSREFLDFLTRPELREAF 193
+E FPR + G F +I ERR+ ++ L I + S P+L+E F
Sbjct: 73 LEEFPAFPRAQVFGRFEASVIEERRKGAEDLLRFTVHIPALNNS---------PQLKEFF 123
Query: 194 GCLRAGQYPRALELL--LRVLP 213
R G+ R LE+ L +LP
Sbjct: 124 ---RGGEVTRPLEVSRDLHILP 142
>gi|22547191 sorting nexin 15 isoform A [Homo sapiens]
Length = 342
Score = 46.6 bits (109), Expect = 3e-05
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 18/142 (12%)
Query: 78 FEIASARIEERKVSKFVVYQIIVIQTGSFDNNKAVLERRYSDFAKLQKALLKTFREEIED 137
+ ++ R + +++ V + + D + V+ +RYSDF KL L T R
Sbjct: 13 YTVSDPRTHPKGYTEYKVTAQFISKKDPEDVKEVVVWKRYSDFRKLHGDLAYTHRNLFRR 72
Query: 138 VE----FPRKHLTGNFAEEMICERRRALQEYLGLLYAIRCVRRSREFLDFLTRPELREAF 193
+E FPR + G F +I ERR+ ++ L I + S P+L+E F
Sbjct: 73 LEEFPAFPRAQVFGRFEASVIEERRKGAEDLLRFTVHIPALNNS---------PQLKEFF 123
Query: 194 GCLRAGQYPRALELL--LRVLP 213
R G+ R LE+ L +LP
Sbjct: 124 ---RGGEVTRPLEVSRDLHILP 142
>gi|7662655 SBBI31 protein [Homo sapiens]
Length = 169
Score = 44.7 bits (104), Expect = 1e-04
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 14/120 (11%)
Query: 80 IASARIEERKVSK-FVVYQIIVIQTGSFDNNKAVLERRYSDFAKLQKALLKTFREEIEDV 138
I S R EE + + + V++I V+ G K +E+RYS+F L K L K I+
Sbjct: 5 IPSFRYEESDLERGYTVFKIEVLMNG----RKHFVEKRYSEFHALHKKLKKC----IKTP 56
Query: 139 EFPRKHLTGNFAEEMICERRRALQEYLGLLYAIRCVRRSREFLDFLT---RPELREAFGC 195
E P KH+ N+ +++ +RR+ L+ YL + + + FLDFL P L +A C
Sbjct: 57 EIPSKHVR-NWVPKVLEQRRQGLETYLQAV-ILENEELPKLFLDFLNVRHLPSLPKAESC 114
>gi|41327691 kinesin-like motor protein C20orf23 [Homo sapiens]
Length = 1317
Score = 42.0 bits (97), Expect = 7e-04
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 115 RRYSDFAKLQKALLKTFREEIEDVEFPRKHLTGNFAEEMICERRRALQEYLGLLYAI 171
RRYS F ++ K L K E+ +EFP K L GN E +I ERR L++YL +++
Sbjct: 1219 RRYSRFREMHKTL-KLKYAELAALEFPPKKLFGNKDERVIAERRSHLEKYLRDFFSV 1274
>gi|31543452 PX domain containing serine/threonine kinase [Homo
sapiens]
Length = 578
Score = 40.4 bits (93), Expect = 0.002
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 82 SARIEERKVSKFVVYQIIVIQTGSFDNNKAVLERRYSDFAKLQKALLKTFREEIEDVEFP 141
+A IE + + II +Q G N + RRYSDF L +L + P
Sbjct: 21 TAAIEASQSLQSHTEYIIRVQRGISVENSWQIVRRYSDFDLLNNSLQIAGLS----LPLP 76
Query: 142 RKHLTGNFAEEMICERRRALQEYLGLL 168
K L GN E I ER++ LQ YL ++
Sbjct: 77 PKKLIGNMDREFIAERQKGLQNYLNVI 103
>gi|31742501 sorting nexin family member 27 [Homo sapiens]
Length = 528
Score = 40.4 bits (93), Expect = 0.002
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 29/123 (23%)
Query: 70 RWKHVKLLFEIASARIEERKVSKFVVYQIIVIQTGSFDNNKAVLERRYSDFAKLQKALLK 129
R+KHV E+ KFVVY + + + + +RY +FA L + L
Sbjct: 169 RYKHV------------EQNGEKFVVYNVYMA-------GRQLCSKRYREFAILHQNL-- 207
Query: 130 TFREEIEDVEFPRKHLTGNF----AEEMICERRRALQEYLGLLYAIRCVRRSREFLDFLT 185
+ E + FPR L G + +E+ + RRR L+EYL + +IR + S +FL+
Sbjct: 208 --KREFANFTFPR--LPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIGESDIMQEFLS 263
Query: 186 RPE 188
+
Sbjct: 264 ESD 266
>gi|19923723 ribosomal protein S6 kinase, 52kDa, polypeptide 1
isoform a [Homo sapiens]
Length = 1066
Score = 38.1 bits (87), Expect = 0.010
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 87 ERKVSKFVVYQI---IVIQTGSFDNNKAVLERRYSDFAKLQKALLKTFREEIEDVE---- 139
+R + VY++ +V + D + ++ +RYSDF KL K L + + E
Sbjct: 21 QRHPRGYTVYKVTARVVSRRNPEDVQEIIVWKRYSDFKKLHKELWQIHKNLFRHSELFPP 80
Query: 140 FPRKHLTGNFAEEMICERRRALQEYLGLLYAIRCVRRSREFLDF 183
F + + G F E +I ERR+ ++ L I + S++ DF
Sbjct: 81 FAKGIVFGRFDETVIEERRQCAEDLLQFSANIPALYNSKQLEDF 124
>gi|7706706 sorting nexin 9 [Homo sapiens]
Length = 595
Score = 37.7 bits (86), Expect = 0.013
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
Query: 71 WKHVKLLFEIASARIEERKVSK-FVVYQIIVIQTGSFDNNKAVLERRYSDFAKLQKALLK 129
W + F+ A + RK SK + + I Q + N++V RY F L + LL
Sbjct: 243 WVYPTSTFDCVVA--DPRKGSKMYGLKSYIEYQLTPTNTNRSV-NHRYKHFDWLYERLLV 299
Query: 130 TFREEIEDVEFPRKHLTGNFAEEMICERRRALQEYLGLLYAIRCVRRSREFLDFLTRPEL 189
F I P K +TG F EE I R LQ ++ + + S F FL +
Sbjct: 300 KFGSAIPIPSLPDKQVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDE 359
Query: 190 RE 191
+E
Sbjct: 360 KE 361
>gi|23238244 sorting nexin 16 isoform a [Homo sapiens]
Length = 344
Score = 37.4 bits (85), Expect = 0.018
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 15/142 (10%)
Query: 47 SGLSSNSSMTTRELQQYWQN-QKCRWKHVKLLFEIASARIEERKVSKFVVYQIIVIQTGS 105
+G +S+ +TR QN + W+ I + E + +KF VY+I+V +T
Sbjct: 78 TGTASSIEYSTRPRDTEEQNPETVNWEDRPSTPTILGYEVMEER-AKFTVYKILVKKT-- 134
Query: 106 FDNNKAVLERRYSDFAKLQ---KALLKTFREEIEDVEFPRKHLTGNFAEEMICERRRALQ 162
V+ RRY+DF++L K + FR + P++ N+ + + +R+ LQ
Sbjct: 135 -PEESWVVFRRYTDFSRLNDKLKEMFPGFRLALP----PKRWFKDNYNADFLEDRQLGLQ 189
Query: 163 EYLGLLYAIRCVRRS---REFL 181
+L L A + + REFL
Sbjct: 190 AFLQNLVAHKDIANCLAVREFL 211
>gi|23238246 sorting nexin 16 isoform a [Homo sapiens]
Length = 344
Score = 37.4 bits (85), Expect = 0.018
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 15/142 (10%)
Query: 47 SGLSSNSSMTTRELQQYWQN-QKCRWKHVKLLFEIASARIEERKVSKFVVYQIIVIQTGS 105
+G +S+ +TR QN + W+ I + E + +KF VY+I+V +T
Sbjct: 78 TGTASSIEYSTRPRDTEEQNPETVNWEDRPSTPTILGYEVMEER-AKFTVYKILVKKT-- 134
Query: 106 FDNNKAVLERRYSDFAKLQ---KALLKTFREEIEDVEFPRKHLTGNFAEEMICERRRALQ 162
V+ RRY+DF++L K + FR + P++ N+ + + +R+ LQ
Sbjct: 135 -PEESWVVFRRYTDFSRLNDKLKEMFPGFRLALP----PKRWFKDNYNADFLEDRQLGLQ 189
Query: 163 EYLGLLYAIRCVRRS---REFL 181
+L L A + + REFL
Sbjct: 190 AFLQNLVAHKDIANCLAVREFL 211
>gi|23111055 sorting nexin 7 isoform b [Homo sapiens]
Length = 336
Score = 37.0 bits (84), Expect = 0.023
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 90 VSKFVVYQIIV-IQTGSFDNNKAVLERRYSDF----AKLQKALLKTFREEIEDVEFPRKH 144
+ F+ Y+II G FD+++ + RRY DF KL++A + + +F K
Sbjct: 46 IETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPE-KFIVKG 104
Query: 145 LTGNFAEEMICERRRALQEYLGLLYAIRCVRRSREFLDFLT 185
+ F ++ I RR+AL ++L + + + +F FLT
Sbjct: 105 MVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLT 145
>gi|194294540 sorting nexin 7 isoform a [Homo sapiens]
Length = 451
Score = 37.0 bits (84), Expect = 0.023
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 90 VSKFVVYQIIV-IQTGSFDNNKAVLERRYSDF----AKLQKALLKTFREEIEDVEFPRKH 144
+ F+ Y+II G FD+++ + RRY DF KL++A + + +F K
Sbjct: 110 IETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPE-KFIVKG 168
Query: 145 LTGNFAEEMICERRRALQEYLGLLYAIRCVRRSREFLDFLT 185
+ F ++ I RR+AL ++L + + + +F FLT
Sbjct: 169 MVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLT 209
>gi|154091028 sorting nexin 29 [Homo sapiens]
Length = 428
Score = 37.0 bits (84), Expect = 0.023
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 80 IASARIEERKVSKFVVYQIIVIQTGSFDNNKAVLERRYSDFAKLQKALLKTFREEIEDVE 139
I S + + + F VYQ+ + +++ + RRY++F L L + ++
Sbjct: 277 IPSVFLRGKAANAFHVYQVYI----RIKDDEWNIYRRYTEFRSLHHKLQNKY-PQVRAYN 331
Query: 140 FPRKHLTGNFAEEMICERRRALQEYL 165
FP K GN + + ERR+ LQ YL
Sbjct: 332 FPPKKAIGNKDAKFVEERRKQLQNYL 357
>gi|209915591 ribosomal protein S6 kinase, 52kDa, polypeptide 1
isoform b [Homo sapiens]
Length = 1054
Score = 35.0 bits (79), Expect = 0.087
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 110 KAVLERRYSDFAKLQKALLKTFREEIEDVE----FPRKHLTGNFAEEMICERRRALQEYL 165
+ ++ +RYSDF KL K L + + E F + + G F E +I ERR+ ++ L
Sbjct: 35 RIIVWKRYSDFKKLHKELWQIHKNLFRHSELFPPFAKGIVFGRFDETVIEERRQCAEDLL 94
Query: 166 GLLYAIRCVRRSREFLDF 183
I + S++ DF
Sbjct: 95 QFSANIPALYNSKQLEDF 112
>gi|71772838 sorting nexin 22 [Homo sapiens]
Length = 193
Score = 35.0 bits (79), Expect = 0.087
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 12/92 (13%)
Query: 94 VVYQIIVIQTGSFDNNKAVLERRYSDFAKLQKALLKTFREEIEDVEFPRKHLTGNFAEEM 153
+V+++ V+ +G + + RRYS+F L K + K ++ +FP K L N+
Sbjct: 25 MVFRVEVLCSG----RRHTVPRRYSEFHALHKRIKKLYKVP----DFPSKRLP-NWRTRG 75
Query: 154 ICERRRALQEYL-GLLYAIRCVRRSREFLDFL 184
+ +RR+ L+ Y+ G+LY + V +E L+FL
Sbjct: 76 LEQRRQGLEAYIQGILYLNQEV--PKELLEFL 105
>gi|224177511 sorting nexin 18 isoform c [Homo sapiens]
Length = 591
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 90 VSKFVVYQIIVIQTGSFDNNKAVLERRYSDFAKLQKALLKTFREEIEDVEFPRKHLTGNF 149
+ ++ Y+++ T + + RRY F L L + F I P K TG F
Sbjct: 292 MKSYISYKLVPTHT------QVPVHRRYKHFDWLYARLAEKF-PVISVPHLPEKQATGRF 344
Query: 150 AEEMICERRRALQEYLGLLYAIRCVRRSREFLDFLTRP 187
E+ I +RR+ L ++ + + + + F FLT P
Sbjct: 345 EEDFISKRRKGLIWWMNHMASHPVLAQCDVFQHFLTCP 382
>gi|157057545 sorting nexin 18 isoform a [Homo sapiens]
Length = 624
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 90 VSKFVVYQIIVIQTGSFDNNKAVLERRYSDFAKLQKALLKTFREEIEDVEFPRKHLTGNF 149
+ ++ Y+++ T + + RRY F L L + F I P K TG F
Sbjct: 292 MKSYISYKLVPTHT------QVPVHRRYKHFDWLYARLAEKF-PVISVPHLPEKQATGRF 344
Query: 150 AEEMICERRRALQEYLGLLYAIRCVRRSREFLDFLTRP 187
E+ I +RR+ L ++ + + + + F FLT P
Sbjct: 345 EEDFISKRRKGLIWWMNHMASHPVLAQCDVFQHFLTCP 382
>gi|157057543 sorting nexin 18 isoform b [Homo sapiens]
Length = 628
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 90 VSKFVVYQIIVIQTGSFDNNKAVLERRYSDFAKLQKALLKTFREEIEDVEFPRKHLTGNF 149
+ ++ Y+++ T + + RRY F L L + F I P K TG F
Sbjct: 292 MKSYISYKLVPTHT------QVPVHRRYKHFDWLYARLAEKF-PVISVPHLPEKQATGRF 344
Query: 150 AEEMICERRRALQEYLGLLYAIRCVRRSREFLDFLTRP 187
E+ I +RR+ L ++ + + + + F FLT P
Sbjct: 345 EEDFISKRRKGLIWWMNHMASHPVLAQCDVFQHFLTCP 382
>gi|111118961 sorting nexin 21 isoform d [Homo sapiens]
Length = 158
Score = 33.5 bits (75), Expect = 0.25
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 37 PGPDGHLDTHSGLSSNSSMTTRELQQYWQNQKCRWKHVKLLFEIASARIEERKVSKFV 94
P PDG S + R+LQ +W+ + +LLFE+ SA + + SK+V
Sbjct: 100 PPPDGQW--------GSQLLARQLQDFWKKSRNTLAPQRLLFEVTSANVVKDPPSKYV 149
>gi|23111026 sorting nexin 11 [Homo sapiens]
Length = 270
Score = 33.1 bits (74), Expect = 0.33
Identities = 33/150 (22%), Positives = 69/150 (46%), Gaps = 9/150 (6%)
Query: 69 CRWKHVKLLFEIASARIEERKV------SKFVVYQIIV-IQTGSFDNNKAVLERRYSDFA 121
CR + E+ + R+++ +V + +V Y+I + + +F + + RRY +F
Sbjct: 5 CRMSENQEQEEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFV 64
Query: 122 KLQKALLKTFREEIEDVEFPRKHLTGNFAEEMICERRRALQEYL-GLLYAIRCVRRSREF 180
L+K L + + E P K ++E I +RR+ LQ +L +L ++ + S+
Sbjct: 65 WLRKQLQRN-AGLVPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLH 123
Query: 181 LDFLTRPELREAFGCLRAGQYPRALELLLR 210
L ++ + E C++ + +LR
Sbjct: 124 LFLQSQLSVPEIEACVQGRSTMTVSDAILR 153
>gi|23111028 sorting nexin 11 [Homo sapiens]
Length = 270
Score = 33.1 bits (74), Expect = 0.33
Identities = 33/150 (22%), Positives = 69/150 (46%), Gaps = 9/150 (6%)
Query: 69 CRWKHVKLLFEIASARIEERKV------SKFVVYQIIV-IQTGSFDNNKAVLERRYSDFA 121
CR + E+ + R+++ +V + +V Y+I + + +F + + RRY +F
Sbjct: 5 CRMSENQEQEEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFV 64
Query: 122 KLQKALLKTFREEIEDVEFPRKHLTGNFAEEMICERRRALQEYL-GLLYAIRCVRRSREF 180
L+K L + + E P K ++E I +RR+ LQ +L +L ++ + S+
Sbjct: 65 WLRKQLQRN-AGLVPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLH 123
Query: 181 LDFLTRPELREAFGCLRAGQYPRALELLLR 210
L ++ + E C++ + +LR
Sbjct: 124 LFLQSQLSVPEIEACVQGRSTMTVSDAILR 153
>gi|24797143 sorting nexin 14 isoform b [Homo sapiens]
Length = 893
Score = 32.7 bits (73), Expect = 0.43
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 115 RRYSDFAKLQKALLKTFREEIEDVEFPRKHLTGNFAEEMICERRRALQEYLGLLYAIRCV 174
RRY +F L+ L + F D + P K + G E + +R QEYL L +
Sbjct: 562 RRYLEFYVLESKLTE-FHGAFPDAQLPSKRIIGPKNYEFLKSKREEFQEYLQKLLQHPEL 620
Query: 175 RRSREFLDFLT 185
S+ DFL+
Sbjct: 621 SNSQLLADFLS 631
>gi|24797145 sorting nexin 14 isoform a [Homo sapiens]
Length = 946
Score = 32.7 bits (73), Expect = 0.43
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 115 RRYSDFAKLQKALLKTFREEIEDVEFPRKHLTGNFAEEMICERRRALQEYLGLLYAIRCV 174
RRY +F L+ L + F D + P K + G E + +R QEYL L +
Sbjct: 615 RRYLEFYVLESKLTE-FHGAFPDAQLPSKRIIGPKNYEFLKSKREEFQEYLQKLLQHPEL 673
Query: 175 RRSREFLDFLT 185
S+ DFL+
Sbjct: 674 SNSQLLADFLS 684
>gi|154759259 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
isoform 2 [Homo sapiens]
Length = 2472
Score = 32.7 bits (73), Expect = 0.43
Identities = 46/206 (22%), Positives = 76/206 (36%), Gaps = 22/206 (10%)
Query: 37 PGPDGHLDTHSGLSSNSSMTTRELQQYWQNQKCRWKHVKLLFEIASARIEERKVSKFVVY 96
P G LDT LS ++++ E+QQ WK +K L R+EE + V
Sbjct: 1818 PAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVEHWKELKQLAAARGQRLEESLEYQQFVA 1877
Query: 97 QIIVIQTGSFDNNKAVLERRYSDFAKLQKALLK----------TFREEIEDVEFPRKHL- 145
+ + + V Y D + LLK ++ + DV + L
Sbjct: 1878 NVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCTNGQDLI 1937
Query: 146 -TGNFAEEMICERRRALQEYLGLLYAIRCVRRSR-----EFLDFLTRPELREAF-----G 194
N EE I + + L + L R+++ FL F + ++ E++
Sbjct: 1938 KKNNHHEENISSKMKGLNGKVSDLEKAAAQRKAKLDENSAFLQFNWKADVVESWIGEKEN 1997
Query: 195 CLRAGQYPRALELLLRVLPLQEKLTA 220
L+ Y R L + +L QE A
Sbjct: 1998 SLKTDDYGRDLSSVQTLLTKQETFDA 2023
>gi|194595509 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
isoform 1 [Homo sapiens]
Length = 2477
Score = 32.7 bits (73), Expect = 0.43
Identities = 46/206 (22%), Positives = 76/206 (36%), Gaps = 22/206 (10%)
Query: 37 PGPDGHLDTHSGLSSNSSMTTRELQQYWQNQKCRWKHVKLLFEIASARIEERKVSKFVVY 96
P G LDT LS ++++ E+QQ WK +K L R+EE + V
Sbjct: 1823 PAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVEHWKELKQLAAARGQRLEESLEYQQFVA 1882
Query: 97 QIIVIQTGSFDNNKAVLERRYSDFAKLQKALLK----------TFREEIEDVEFPRKHL- 145
+ + + V Y D + LLK ++ + DV + L
Sbjct: 1883 NVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCTNGQDLI 1942
Query: 146 -TGNFAEEMICERRRALQEYLGLLYAIRCVRRSR-----EFLDFLTRPELREAF-----G 194
N EE I + + L + L R+++ FL F + ++ E++
Sbjct: 1943 KKNNHHEENISSKMKGLNGKVSDLEKAAAQRKAKLDENSAFLQFNWKADVVESWIGEKEN 2002
Query: 195 CLRAGQYPRALELLLRVLPLQEKLTA 220
L+ Y R L + +L QE A
Sbjct: 2003 SLKTDDYGRDLSSVQTLLTKQETFDA 2028
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,072,741
Number of Sequences: 37866
Number of extensions: 631707
Number of successful extensions: 2386
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 2304
Number of HSP's gapped (non-prelim): 110
length of query: 316
length of database: 18,247,518
effective HSP length: 102
effective length of query: 214
effective length of database: 14,385,186
effective search space: 3078429804
effective search space used: 3078429804
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.