Search of human proteins with 33386674

Search of human proteins with 33386674

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|33386674 toll-like receptor adaptor molecule 2 [Homo
sapiens]
         (235 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|33386674 toll-like receptor adaptor molecule 2 [Homo sapiens]      482   e-136
gi|41281981 toll-like receptor adaptor molecule 1 [Homo sapiens]       68   8e-12
gi|62865621 toll-like receptor 10 precursor [Homo sapiens]             37   0.019
gi|62865618 toll-like receptor 10 precursor [Homo sapiens]             37   0.019
gi|20143971 toll-like receptor 6 [Homo sapiens]                        34   0.12 
gi|19718734 toll-like receptor 2 [Homo sapiens]                        34   0.12 
gi|41350337 toll-like receptor 1 [Homo sapiens]                        33   0.16 
gi|22547219 Toll-interleukin 1 receptor domain-containing adapto...    33   0.28 
gi|89111122 Toll-interleukin 1 receptor domain-containing adapto...    33   0.28 
gi|16751843 toll-like receptor 5 [Homo sapiens]                        32   0.47 
gi|83035136 F-box protein 31 [Homo sapiens]                            32   0.62 
gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Hom...    32   0.62 
gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Hom...    32   0.62 
gi|48762712 SH3-binding domain and glutamic acid-rich protein is...    31   1.1  
gi|6677929 SH3-binding domain and glutamic acid-rich protein iso...    31   1.1  
gi|189409124 armadillo repeat containing 3 [Homo sapiens]              29   4.0  
gi|4759128 solute carrier family 24 (sodium/potassium/calcium ex...    29   4.0  
gi|226437606 ankyrin repeat domain 34C [Homo sapiens]                  28   5.2  
gi|239756364 PREDICTED: ankyrin repeat domain 34C [Homo sapiens]       28   5.2  
gi|239750889 PREDICTED: ankyrin repeat domain 34C [Homo sapiens]       28   5.2  
gi|239745252 PREDICTED: ankyrin repeat domain 34C [Homo sapiens]       28   5.2  
gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens]       28   5.2  
gi|195546900 suppressor of Ty 5 homolog isoform a [Homo sapiens]       28   5.2  
gi|161169023 suppressor of Ty 5 homolog isoform a [Homo sapiens]       28   5.2  
gi|20149524 suppressor of Ty 5 homolog isoform a [Homo sapiens]        28   5.2  
gi|94721344 zinc finger, CW type with PWWP domain 1 [Homo sapiens]     28   5.2  
gi|31543140 Usher syndrome 1C binding protein 1 [Homo sapiens]         28   5.2  
gi|6005942 valosin-containing protein [Homo sapiens]                   28   6.8  
gi|87298939 hypothetical protein LOC131831 [Homo sapiens]              28   6.8  
gi|109689720 acyl-Coenzyme A binding domain containing 5 isoform...    28   6.8  

>gi|33386674 toll-like receptor adaptor molecule 2 [Homo sapiens]
          Length = 235

 Score =  482 bits (1240), Expect = e-136
 Identities = 235/235 (100%), Positives = 235/235 (100%)

Query: 1   MGIGKSKINSCPLSLSWGKRHSVDTSPGYHESDSKKSEDLSLCNVAEHSNTTEGPTGKQE 60
           MGIGKSKINSCPLSLSWGKRHSVDTSPGYHESDSKKSEDLSLCNVAEHSNTTEGPTGKQE
Sbjct: 1   MGIGKSKINSCPLSLSWGKRHSVDTSPGYHESDSKKSEDLSLCNVAEHSNTTEGPTGKQE 60

Query: 61  GAQSVEEMFEEEAEEEVFLKFVILHAEDDTDEALRVQNLLQDDFGIKPGIIFAEMPCGRQ 120
           GAQSVEEMFEEEAEEEVFLKFVILHAEDDTDEALRVQNLLQDDFGIKPGIIFAEMPCGRQ
Sbjct: 61  GAQSVEEMFEEEAEEEVFLKFVILHAEDDTDEALRVQNLLQDDFGIKPGIIFAEMPCGRQ 120

Query: 121 HLQNLDDAVNGSAWTILLLTENFLRDTWCNFQFYTSLMNSVNRQHKYNSVIPMRPLNNPL 180
           HLQNLDDAVNGSAWTILLLTENFLRDTWCNFQFYTSLMNSVNRQHKYNSVIPMRPLNNPL
Sbjct: 121 HLQNLDDAVNGSAWTILLLTENFLRDTWCNFQFYTSLMNSVNRQHKYNSVIPMRPLNNPL 180

Query: 181 PRERTPFALQTINALEEESRGFPTQVERIFQESVYKTQQTIWKETRNMVQRQFIA 235
           PRERTPFALQTINALEEESRGFPTQVERIFQESVYKTQQTIWKETRNMVQRQFIA
Sbjct: 181 PRERTPFALQTINALEEESRGFPTQVERIFQESVYKTQQTIWKETRNMVQRQFIA 235


>gi|41281981 toll-like receptor adaptor molecule 1 [Homo sapiens]
          Length = 712

 Score = 67.8 bits (164), Expect = 8e-12
 Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 8/162 (4%)

Query: 71  EEAEEEVFLKFVILHAEDDTDEALRVQNLLQDDFGIKPGIIFAE--MPCGRQHLQNLDDA 128
           E + E+ F  FVILHA  D   ALRV+  L +  G+  G  F E     GR  L  L DA
Sbjct: 387 ESSSEQKFYNFVILHARADEHIALRVREKL-EALGVPDGATFCEDFQVPGRGELSCLQDA 445

Query: 129 VNGSAWTILLLTENFLRDTWCNF-QFYTSLMNSVNRQHKYNSVIPMRPLNNPLPR--ERT 185
           ++ SA+ ILLLT NF  D   +  Q   ++M+++ RQ   + VIP  PL +   +    T
Sbjct: 446 IDHSAFIILLLTSNF--DCRLSLHQVNQAMMSNLTRQGSPDCVIPFLPLESSPAQLSSDT 503

Query: 186 PFALQTINALEEESRGFPTQVERIFQESVYKTQQTIWKETRN 227
              L  +  L+E S+ F  +V   F+    + ++ +W++ ++
Sbjct: 504 ASLLSGLVRLDEHSQIFARKVANTFKPHRLQARKAMWRKEQD 545


>gi|62865621 toll-like receptor 10 precursor [Homo sapiens]
          Length = 811

 Score = 36.6 bits (83), Expect = 0.019
 Identities = 24/114 (21%), Positives = 55/114 (48%), Gaps = 2/114 (1%)

Query: 65  VEEMFEEEAEEEVFLKFVILHAEDDTDEALR--VQNLLQDDFGIKPGIIFAEMPCGRQHL 122
           V +  +E+ +  V     I ++E D+       + NL ++D  I   +  +    G+   
Sbjct: 620 VRKTTQEQLKRNVRFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGKSIS 679

Query: 123 QNLDDAVNGSAWTILLLTENFLRDTWCNFQFYTSLMNSVNRQHKYNSVIPMRPL 176
           +N+   +  S  +I +L+ NF+++ WC+++FY +  N  +    +  +I + P+
Sbjct: 680 ENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPI 733


>gi|62865618 toll-like receptor 10 precursor [Homo sapiens]
          Length = 811

 Score = 36.6 bits (83), Expect = 0.019
 Identities = 24/114 (21%), Positives = 55/114 (48%), Gaps = 2/114 (1%)

Query: 65  VEEMFEEEAEEEVFLKFVILHAEDDTDEALR--VQNLLQDDFGIKPGIIFAEMPCGRQHL 122
           V +  +E+ +  V     I ++E D+       + NL ++D  I   +  +    G+   
Sbjct: 620 VRKTTQEQLKRNVRFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGKSIS 679

Query: 123 QNLDDAVNGSAWTILLLTENFLRDTWCNFQFYTSLMNSVNRQHKYNSVIPMRPL 176
           +N+   +  S  +I +L+ NF+++ WC+++FY +  N  +    +  +I + P+
Sbjct: 680 ENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPI 733


>gi|20143971 toll-like receptor 6 [Homo sapiens]
          Length = 796

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 118 GRQHLQNLDDAVNGSAWTILLLTENFLRDTWCNFQFYTSLMNSVNRQHKYNSVIPMRPLN 177
           G+  ++N+ + +  S  +I +L+ NF++  WC+++ Y +  N  +     N++I +  L 
Sbjct: 681 GKSIVENIINCIEKSYKSIFVLSPNFVQSEWCHYELYFAHHNLFHEGS--NNLILI--LL 736

Query: 178 NPLPRERTPFALQTINAL 195
            P+P+   P     + AL
Sbjct: 737 EPIPQNSIPNKYHKLKAL 754


>gi|19718734 toll-like receptor 2 [Homo sapiens]
          Length = 784

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 14/59 (23%), Positives = 31/59 (52%)

Query: 118 GRQHLQNLDDAVNGSAWTILLLTENFLRDTWCNFQFYTSLMNSVNRQHKYNSVIPMRPL 176
           G+  + N+ D++  S  T+ +L+ENF++  WC ++   S     +  +    +I + P+
Sbjct: 682 GKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPI 740


>gi|41350337 toll-like receptor 1 [Homo sapiens]
          Length = 786

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 118 GRQHLQNLDDAVNGSAWTILLLTENFLRDTWCNFQFYTSLMNSVNRQHKYNSVIPMRPLN 177
           G+  ++N+   +  S  +I +L+ NF++  WC+++ Y +  N  +     NS+I +  L 
Sbjct: 676 GKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHYELYFAHHNLFHEGS--NSLILI--LL 731

Query: 178 NPLPRERTPFALQTINAL 195
            P+P+   P +   + +L
Sbjct: 732 EPIPQYSIPSSYHKLKSL 749


>gi|22547219 Toll-interleukin 1 receptor domain-containing adaptor
           protein isoform b [Homo sapiens]
          Length = 235

 Score = 32.7 bits (73), Expect = 0.28
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 83  ILHAEDDTDEALRVQNLLQDDFG-IKPGIIFAEMPCGRQHLQNLDDAVNGSAWTILLLTE 141
           + H+E+D   A  + + L+     ++  +   +   G   +  L  A++ S   +LL+T 
Sbjct: 90  VCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITP 149

Query: 142 NFLRDTWCNFQFYTSL 157
            FL+D WC +Q   +L
Sbjct: 150 GFLQDPWCKYQMLQAL 165


>gi|89111122 Toll-interleukin 1 receptor domain-containing adaptor
           protein isoform a [Homo sapiens]
          Length = 221

 Score = 32.7 bits (73), Expect = 0.28
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 83  ILHAEDDTDEALRVQNLLQDDFG-IKPGIIFAEMPCGRQHLQNLDDAVNGSAWTILLLTE 141
           + H+E+D   A  + + L+     ++  +   +   G   +  L  A++ S   +LL+T 
Sbjct: 90  VCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITP 149

Query: 142 NFLRDTWCNFQFYTSL 157
            FL+D WC +Q   +L
Sbjct: 150 GFLQDPWCKYQMLQAL 165


>gi|16751843 toll-like receptor 5 [Homo sapiens]
          Length = 858

 Score = 32.0 bits (71), Expect = 0.47
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 118 GRQHLQNLDDAVNGSAWTILLLTENFLRDTWC 149
           G   + N+ DA+  S   + L++ +FLRD WC
Sbjct: 737 GENRIANIQDAIWNSRKIVCLVSRHFLRDGWC 768


>gi|83035136 F-box protein 31 [Homo sapiens]
          Length = 539

 Score = 31.6 bits (70), Expect = 0.62
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 9/84 (10%)

Query: 35  KKSEDLSLCNVAEHSNTTEGPTG------KQEGAQSVEEMFEEEAEEEVFLKFVILHAED 88
           KK E  + CN  +H   + G         ++E  +++E++F E  +E + +KF+     D
Sbjct: 222 KKDEFSTKCNQTDHHRMSGGRQEEFRTWLREEWGRTLEDIFHEHMQELILMKFIYTSQYD 281

Query: 89  D--TDEALRVQNLLQDDFGIKPGI 110
           +  T   + +     DD  IKPG+
Sbjct: 282 NCLTYRRIYLPPSRPDDL-IKPGL 304


>gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Homo
            sapiens]
          Length = 1108

 Score = 31.6 bits (70), Expect = 0.62
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 17/84 (20%)

Query: 20   RHSVDTSPGYHESDSKKSEDLSLCNVAEHSNTTEGPTGKQEGAQSVEEMFEEEAEEEVFL 79
            R   + S    E + K+ E+L      +     E P G +E  +  EE+ EEE EE    
Sbjct: 1014 REEDEDSEKEEEEEDKEMEEL------QEEKECEKPQGDEEEEEEEEEVEEEEVEE---- 1063

Query: 80   KFVILHAEDDTDEALRVQNLLQDD 103
                  AE++ +EA + + L++DD
Sbjct: 1064 ------AENEGEEA-KTEGLMKDD 1080


>gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Homo
            sapiens]
          Length = 1124

 Score = 31.6 bits (70), Expect = 0.62
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 17/84 (20%)

Query: 20   RHSVDTSPGYHESDSKKSEDLSLCNVAEHSNTTEGPTGKQEGAQSVEEMFEEEAEEEVFL 79
            R   + S    E + K+ E+L      +     E P G +E  +  EE+ EEE EE    
Sbjct: 1030 REEDEDSEKEEEEEDKEMEEL------QEEKECEKPQGDEEEEEEEEEVEEEEVEE---- 1079

Query: 80   KFVILHAEDDTDEALRVQNLLQDD 103
                  AE++ +EA + + L++DD
Sbjct: 1080 ------AENEGEEA-KTEGLMKDD 1096


>gi|48762712 SH3-binding domain and glutamic acid-rich protein
           isoform b [Homo sapiens]
          Length = 128

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 18/49 (36%), Positives = 24/49 (48%)

Query: 28  GYHESDSKKSEDLSLCNVAEHSNTTEGPTGKQEGAQSVEEMFEEEAEEE 76
           G  E+  + SED+     A+  N  EG T  +E  +   E  E EAEEE
Sbjct: 65  GETEAQKEGSEDVGNLPEAQEKNEEEGETATEETEEIAMEGAEGEAEEE 113


>gi|6677929 SH3-binding domain and glutamic acid-rich protein
           isoform a [Homo sapiens]
          Length = 239

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 18/49 (36%), Positives = 24/49 (48%)

Query: 28  GYHESDSKKSEDLSLCNVAEHSNTTEGPTGKQEGAQSVEEMFEEEAEEE 76
           G  E+  + SED+     A+  N  EG T  +E  +   E  E EAEEE
Sbjct: 176 GETEAQKEGSEDVGNLPEAQEKNEEEGETATEETEEIAMEGAEGEAEEE 224


>gi|189409124 armadillo repeat containing 3 [Homo sapiens]
          Length = 872

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 1   MGIGKSKINSCPL---SLSWGKRHSVDTSPGYHESDSKKSEDLSLCNVAEHSNTTEGPTG 57
           +G G+S  +S  L   S    K++S   S G+      KSE  S  N     + T+    
Sbjct: 622 VGYGRSISSSSSLRRSSKEKNKKNSYHFSAGFGSPIEDKSEPASGRNTVLSKSATKEKGW 681

Query: 58  KQEGAQSVEEMFEEEAEEEVFLKFV 82
           ++   +  EE  +EE E  V  KFV
Sbjct: 682 RKSKGKKEEEKVKEEEEVMVVPKFV 706


>gi|4759128 solute carrier family 24 (sodium/potassium/calcium
           exchanger), member 1 [Homo sapiens]
          Length = 1099

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 18  GKRHSVDTSPGYHESDSKKSEDLSLCNVAEHSNTTEGPT--GKQEGAQSVEEMFEEEAEE 75
           G+ H+ D     +E +++ S++LS  N  E  N  +G    G  +G  S EE  EEE +E
Sbjct: 812 GEIHAEDGEMKGNEGETE-SQELSAENHGEAKNDEKGVEDGGGSDGGDSEEEEEEEEEQE 870

Query: 76  E 76
           E
Sbjct: 871 E 871


>gi|226437606 ankyrin repeat domain 34C [Homo sapiens]
          Length = 535

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 3   IGKSKINSCPLSLSWGKRHSVDTSPGYHESDSKK 36
           + + K+NS  LSL  G R S+DT P    S +++
Sbjct: 403 LDRKKLNSSHLSLFHGSRESLDTVPSTSPSSARR 436


>gi|239756364 PREDICTED: ankyrin repeat domain 34C [Homo sapiens]
          Length = 534

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 3   IGKSKINSCPLSLSWGKRHSVDTSPGYHESDSKK 36
           + + K+NS  LSL  G R S+DT P    S +++
Sbjct: 402 LDRKKLNSSHLSLFHGSRESLDTVPSTSPSSARR 435


>gi|239750889 PREDICTED: ankyrin repeat domain 34C [Homo sapiens]
          Length = 534

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 3   IGKSKINSCPLSLSWGKRHSVDTSPGYHESDSKK 36
           + + K+NS  LSL  G R S+DT P    S +++
Sbjct: 402 LDRKKLNSSHLSLFHGSRESLDTVPSTSPSSARR 435


>gi|239745252 PREDICTED: ankyrin repeat domain 34C [Homo sapiens]
          Length = 535

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 3   IGKSKINSCPLSLSWGKRHSVDTSPGYHESDSKK 36
           + + K+NS  LSL  G R S+DT P    S +++
Sbjct: 403 LDRKKLNSSHLSLFHGSRESLDTVPSTSPSSARR 436


>gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens]
          Length = 1083

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 16/46 (34%), Positives = 22/46 (47%)

Query: 31 ESDSKKSEDLSLCNVAEHSNTTEGPTGKQEGAQSVEEMFEEEAEEE 76
          E DS++S D     V E   +  G   ++E     EE  EEE +EE
Sbjct: 12 EEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEE 57


>gi|195546900 suppressor of Ty 5 homolog isoform a [Homo sapiens]
          Length = 1087

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 16/46 (34%), Positives = 22/46 (47%)

Query: 31 ESDSKKSEDLSLCNVAEHSNTTEGPTGKQEGAQSVEEMFEEEAEEE 76
          E DS++S D     V E   +  G   ++E     EE  EEE +EE
Sbjct: 12 EEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEE 57


>gi|161169023 suppressor of Ty 5 homolog isoform a [Homo sapiens]
          Length = 1087

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 16/46 (34%), Positives = 22/46 (47%)

Query: 31 ESDSKKSEDLSLCNVAEHSNTTEGPTGKQEGAQSVEEMFEEEAEEE 76
          E DS++S D     V E   +  G   ++E     EE  EEE +EE
Sbjct: 12 EEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEE 57


>gi|20149524 suppressor of Ty 5 homolog isoform a [Homo sapiens]
          Length = 1087

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 16/46 (34%), Positives = 22/46 (47%)

Query: 31 ESDSKKSEDLSLCNVAEHSNTTEGPTGKQEGAQSVEEMFEEEAEEE 76
          E DS++S D     V E   +  G   ++E     EE  EEE +EE
Sbjct: 12 EEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEE 57


>gi|94721344 zinc finger, CW type with PWWP domain 1 [Homo sapiens]
          Length = 648

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 11/97 (11%)

Query: 35  KKSEDLSLCNVAEHSNTTEGPTGKQEGAQSVEEMFEEEAEEEVFLKFVILHAEDDTDEAL 94
           KK E  ++ NV         P+ +QE  +  +    ++AE++   K  + +AE +    +
Sbjct: 62  KKEEKATMKNV---------PSREQEKKRKAQ--INKQAEKKEKEKSSLTNAEFEEIVQI 110

Query: 95  RVQNLLQDDFGIKPGIIFAEMPCGRQHLQNLDDAVNG 131
            +Q  LQ+  G+  G+ FAE  C +  +    D   G
Sbjct: 111 VLQKSLQECLGMGSGLDFAETSCAQPVVSTQSDKEPG 147


>gi|31543140 Usher syndrome 1C binding protein 1 [Homo sapiens]
          Length = 703

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 14/86 (16%)

Query: 47  EHSNTTEGPTG---KQEGAQSVEEMFEEEAEEEVFLKFVILHAEDDTDEALRVQNLLQDD 103
           E   T+EG  G   KQEGA S +      AE   +L+  +   E   DE +R Q  L+  
Sbjct: 148 EFEGTSEGGAGSLGKQEGAGSCQREAARLAERNAWLRLALSSRE---DELVRTQASLE-- 202

Query: 104 FGIKPGIIFAEMPCGRQHLQNLDDAV 129
                  I AE    ++ +Q L D++
Sbjct: 203 ------AIRAEKETLQKEVQELQDSL 222


>gi|6005942 valosin-containing protein [Homo sapiens]
          Length = 806

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 6/56 (10%)

Query: 82  VILHAEDDTDEALRVQNLLQDDFGIKPGIIFAEMPC------GRQHLQNLDDAVNG 131
           ++L  +  +DE +R+  +++++  ++ G + +  PC       R H+  +DD V G
Sbjct: 70  IVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEG 125


>gi|87298939 hypothetical protein LOC131831 [Homo sapiens]
          Length = 663

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 54 GPTGKQEGAQSVEEMFEEEAEEEV 77
          G  GK++  +S EE+ EEE EEEV
Sbjct: 11 GDPGKKDQKESEEELEEEEEEEEV 34


>gi|109689720 acyl-Coenzyme A binding domain containing 5 isoform 2
           [Homo sapiens]
          Length = 490

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 31  ESDSKKSEDLS--LCNVAEHSNTTEGPTGKQEGAQSVEEMFEEEAEEEV 77
           +  S +S D++  L NV   +   +   GK E + S  E  EEEA+EEV
Sbjct: 117 DKKSGRSSDITSDLGNVLTSTPNAKTVNGKAESSDSGAESEEEEAQEEV 165


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.131    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,295,875
Number of Sequences: 37866
Number of extensions: 418617
Number of successful extensions: 1669
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1627
Number of HSP's gapped (non-prelim): 51
length of query: 235
length of database: 18,247,518
effective HSP length: 99
effective length of query: 136
effective length of database: 14,498,784
effective search space: 1971834624
effective search space used: 1971834624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.