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Search of human proteins with 33188441
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33188441 cytoplasmic polyadenylation element binding protein
2 isoform A [Homo sapiens]
(559 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33188441 cytoplasmic polyadenylation element binding protein ... 1180 0.0
gi|33188439 cytoplasmic polyadenylation element binding protein ... 1164 0.0
gi|50345881 cytoplasmic polyadenylation element binding protein ... 726 0.0
gi|189027090 cytoplasmic polyadenylation element binding protein... 711 0.0
gi|119395725 cytoplasmic polyadenylation element binding protein... 214 2e-55
gi|119395722 cytoplasmic polyadenylation element binding protein... 214 2e-55
gi|119395720 cytoplasmic polyadenylation element binding protein... 214 2e-55
gi|119395718 cytoplasmic polyadenylation element binding protein... 207 2e-53
gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3 ... 52 1e-06
gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2 ... 52 1e-06
gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1 [... 52 1e-06
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 48 3e-05
gi|38261971 cyclic AMP-regulated phosphoprotein, 21 kD isoform 1... 48 3e-05
gi|22027541 programmed cell death 7 [Homo sapiens] 48 3e-05
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 47 5e-05
gi|39812378 RAN binding protein 9 [Homo sapiens] 47 5e-05
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 47 5e-05
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 47 5e-05
gi|182765442 homeobox A10 isoform a [Homo sapiens] 47 6e-05
gi|56118221 amyloid beta (A4) precursor protein-binding, family ... 47 6e-05
gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ... 46 8e-05
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 46 8e-05
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 46 8e-05
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 45 1e-04
gi|149999378 inverted formin 2 isoform 2 [Homo sapiens] 44 3e-04
gi|149999380 inverted formin 2 isoform 1 [Homo sapiens] 44 3e-04
gi|208431824 forkhead box I3 [Homo sapiens] 44 3e-04
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 44 3e-04
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 44 3e-04
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 44 3e-04
>gi|33188441 cytoplasmic polyadenylation element binding protein 2
isoform A [Homo sapiens]
Length = 559
Score = 1180 bits (3052), Expect = 0.0
Identities = 559/559 (100%), Positives = 559/559 (100%)
Query: 1 MPPPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAV 60
MPPPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAV
Sbjct: 1 MPPPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAV 60
Query: 61 PPPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQRNSYNHHQPLL 120
PPPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQRNSYNHHQPLL
Sbjct: 61 PPPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQRNSYNHHQPLL 120
Query: 121 KQSPWSNHQSSGWGTGSMSWGAMHGRDHRRTGNMGIPGTMNQISPLKKPFSGNVIAPPKF 180
KQSPWSNHQSSGWGTGSMSWGAMHGRDHRRTGNMGIPGTMNQISPLKKPFSGNVIAPPKF
Sbjct: 121 KQSPWSNHQSSGWGTGSMSWGAMHGRDHRRTGNMGIPGTMNQISPLKKPFSGNVIAPPKF 180
Query: 181 TRSTPSLTPKSWIEDNVFRTDNNSNTLLPLQDRSRMYDSLNMHSLENSLIDIMRAEHDPL 240
TRSTPSLTPKSWIEDNVFRTDNNSNTLLPLQDRSRMYDSLNMHSLENSLIDIMRAEHDPL
Sbjct: 181 TRSTPSLTPKSWIEDNVFRTDNNSNTLLPLQDRSRMYDSLNMHSLENSLIDIMRAEHDPL 240
Query: 241 KGRLSYPHPGTDNLLMLNGRSSLFPIDDGLLDDGHSDQVGVLNSPTCYSAHQNGERIERF 300
KGRLSYPHPGTDNLLMLNGRSSLFPIDDGLLDDGHSDQVGVLNSPTCYSAHQNGERIERF
Sbjct: 241 KGRLSYPHPGTDNLLMLNGRSSLFPIDDGLLDDGHSDQVGVLNSPTCYSAHQNGERIERF 300
Query: 301 SRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQA 360
SRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQA
Sbjct: 301 SRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQA 360
Query: 361 LIDACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRP 420
LIDACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRP
Sbjct: 361 LIDACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRP 420
Query: 421 LRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGD 480
LRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGD
Sbjct: 421 LRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGD 480
Query: 481 IDKRVEVKPYVLDDQMCDECQGARCGGKFAPFFCANVTCLQYYCEFCWANIHSRAGREFH 540
IDKRVEVKPYVLDDQMCDECQGARCGGKFAPFFCANVTCLQYYCEFCWANIHSRAGREFH
Sbjct: 481 IDKRVEVKPYVLDDQMCDECQGARCGGKFAPFFCANVTCLQYYCEFCWANIHSRAGREFH 540
Query: 541 KPLVKEGADRPRQIHFRWN 559
KPLVKEGADRPRQIHFRWN
Sbjct: 541 KPLVKEGADRPRQIHFRWN 559
>gi|33188439 cytoplasmic polyadenylation element binding protein 2
isoform B [Homo sapiens]
Length = 589
Score = 1164 bits (3011), Expect = 0.0
Identities = 559/589 (94%), Positives = 559/589 (94%), Gaps = 30/589 (5%)
Query: 1 MPPPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAV 60
MPPPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAV
Sbjct: 1 MPPPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAV 60
Query: 61 PPPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQRNSYNHHQPLL 120
PPPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQRNSYNHHQPLL
Sbjct: 61 PPPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQRNSYNHHQPLL 120
Query: 121 KQSPWSNHQSSGWGTGSMSWGAMHGRDHRRTGNMGIPGTMNQISPLKKPFSGNVIAPPKF 180
KQSPWSNHQSSGWGTGSMSWGAMHGRDHRRTGNMGIPGTMNQISPLKKPFSGNVIAPPKF
Sbjct: 121 KQSPWSNHQSSGWGTGSMSWGAMHGRDHRRTGNMGIPGTMNQISPLKKPFSGNVIAPPKF 180
Query: 181 TRSTPSLTPKSWIEDNVFRTDNNSNTLLPLQ----------------------------- 211
TRSTPSLTPKSWIEDNVFRTDNNSNTLLPLQ
Sbjct: 181 TRSTPSLTPKSWIEDNVFRTDNNSNTLLPLQVRSSLQLPAWGSDSLQDSWCTAAGTSRID 240
Query: 212 -DRSRMYDSLNMHSLENSLIDIMRAEHDPLKGRLSYPHPGTDNLLMLNGRSSLFPIDDGL 270
DRSRMYDSLNMHSLENSLIDIMRAEHDPLKGRLSYPHPGTDNLLMLNGRSSLFPIDDGL
Sbjct: 241 QDRSRMYDSLNMHSLENSLIDIMRAEHDPLKGRLSYPHPGTDNLLMLNGRSSLFPIDDGL 300
Query: 271 LDDGHSDQVGVLNSPTCYSAHQNGERIERFSRKVFVGGLPPDIDEDEITASFRRFGPLVV 330
LDDGHSDQVGVLNSPTCYSAHQNGERIERFSRKVFVGGLPPDIDEDEITASFRRFGPLVV
Sbjct: 301 LDDGHSDQVGVLNSPTCYSAHQNGERIERFSRKVFVGGLPPDIDEDEITASFRRFGPLVV 360
Query: 331 DWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRP 390
DWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRP
Sbjct: 361 DWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRP 420
Query: 391 WNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKY 450
WNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKY
Sbjct: 421 WNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKY 480
Query: 451 PKGAGRVAFSNQQSYIAAISARFVQLQHGDIDKRVEVKPYVLDDQMCDECQGARCGGKFA 510
PKGAGRVAFSNQQSYIAAISARFVQLQHGDIDKRVEVKPYVLDDQMCDECQGARCGGKFA
Sbjct: 481 PKGAGRVAFSNQQSYIAAISARFVQLQHGDIDKRVEVKPYVLDDQMCDECQGARCGGKFA 540
Query: 511 PFFCANVTCLQYYCEFCWANIHSRAGREFHKPLVKEGADRPRQIHFRWN 559
PFFCANVTCLQYYCEFCWANIHSRAGREFHKPLVKEGADRPRQIHFRWN
Sbjct: 541 PFFCANVTCLQYYCEFCWANIHSRAGREFHKPLVKEGADRPRQIHFRWN 589
>gi|50345881 cytoplasmic polyadenylation element binding protein 3
[Homo sapiens]
Length = 698
Score = 726 bits (1875), Expect = 0.0
Identities = 390/629 (62%), Positives = 434/629 (68%), Gaps = 108/629 (17%)
Query: 5 SPDSENGFYPGLPSSMNPAFFPSFSPVS--------PHGCTGLSVPTSGGGGGGFGGPFS 56
SP + + G +++ +FF +PV+ PH + FGG FS
Sbjct: 104 SPSFGSTWSTGTTNAVEDSFFQGITPVNGTMLFQNFPHHVNPV-----------FGGTFS 152
Query: 57 ATA---------VPPPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFL 107
PPPP PA Q PP A P PQ RRSP SP Q +AAA
Sbjct: 153 PQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQAQP--PQQRRSPASPSQAPYAQRSAAA-- 208
Query: 108 QQRNSYNHHQPLLKQSP---------------------WSNHQS--SGWGTGSMSWGAMH 144
+Y H QP++ P W+ HQS + W S WG +
Sbjct: 209 ----AYGH-QPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQSVNAAWSAPSNPWGGLQ 263
Query: 145 -GRDHRRTGNMGI------PGTMNQISPLKKPFSGNVIAPPKFTRSTPSLTPKSWIEDNV 197
GRD RR +G+ P +N ISPLKKPFS NVIAPPKF R+ P LT KSW+EDN
Sbjct: 264 AGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNVIAPPKFPRAAP-LTSKSWMEDNA 322
Query: 198 FRTDNNSNTLLPLQDRSRMYDSLNMHSLENSLIDIMRAEHDPLKGR-------------- 243
FRTDN +N LLP QDRSR YD+ N+HSLENSL+D++R +H+PLKG+
Sbjct: 323 FRTDNGNN-LLPFQDRSRPYDTFNLHSLENSLMDMIRTDHEPLKGKHYPPSGPPMSFADI 381
Query: 244 -----------LSYPHPGTDNLLMLNGRSSLFPIDDGLLDDGHSDQV--GVLNSPTCYSA 290
+++ HPGTDN++ LN + LDD H DQ L+SPT
Sbjct: 382 MWRNHFAGRMGINFHHPGTDNIMALN---------NAFLDDSHGDQALSSGLSSPT---R 429
Query: 291 HQNGERIERFSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFL 350
QNGER+ER+SRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFL
Sbjct: 430 CQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFL 489
Query: 351 LFQEESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRK 410
LFQEESSVQALIDAC+EEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRK
Sbjct: 490 LFQEESSVQALIDACLEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRK 549
Query: 411 TIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAIS 470
TIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAIS
Sbjct: 550 TIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAIS 609
Query: 471 ARFVQLQHGDIDKRVEVKPYVLDDQMCDECQGARCGGKFAPFFCANVTCLQYYCEFCWAN 530
ARFVQLQH DIDKRVEVKPYVLDDQMCDECQG RCGGKFAPFFCANVTCLQYYCE+CWA+
Sbjct: 610 ARFVQLQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYCWAS 669
Query: 531 IHSRAGREFHKPLVKEGADRPRQIHFRWN 559
IHSRAGREFHKPLVKEG DRPR + FRW+
Sbjct: 670 IHSRAGREFHKPLVKEGGDRPRHVPFRWS 698
Score = 32.7 bits (73), Expect = 0.90
Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 27/97 (27%)
Query: 4 PSPDSENGFYPGLPSSMN----------PAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGG 53
P P+S P P S PA P+ +P +P+G + + +
Sbjct: 26 PQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMES---------- 75
Query: 54 PFSATAVPPPPPPAMNIPQQQPPPPAAPQQPQSRRSP 90
P P + + P QQPPPP P P + SP
Sbjct: 76 -------PLLPGLSFHQPPQQPPPPQEPAAPGASLSP 105
>gi|189027090 cytoplasmic polyadenylation element binding protein 4
[Homo sapiens]
Length = 729
Score = 711 bits (1835), Expect = 0.0
Identities = 370/529 (69%), Positives = 407/529 (76%), Gaps = 35/529 (6%)
Query: 50 GFGGPFSATAVPPPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQ 109
GFGG FS P P + + P Q Q RRSP SP AA
Sbjct: 217 GFGGSFS----PQIGPLSQHHPHHPHFQHHHSQHQQQRRSPASPHPPPFTHRNAAFNQLP 272
Query: 110 RNSYNHHQPLLKQSPWSNHQS------SGW---GTGSMSWGAMHGRDHRRTGNMGIPGTM 160
+ N ++P SPWS++QS S W G G WG GRDHRR N GI +
Sbjct: 273 HLANNLNKP---PSPWSSYQSPSPTPSSSWSPGGGGYGGWGGSQGRDHRRGLNGGIT-PL 328
Query: 161 NQISPLKKPFSGNVIAPPKFTRSTPSLTPKSWIEDNVFRTDNNSNTLLPLQDRSRMYDSL 220
N ISPLKK F+ N I K+ R + + PKSW+ED++ R DN + P DR R +D
Sbjct: 329 NSISPLKKNFASNHIQLQKYARPSSAFAPKSWMEDSLNRADN----IFPFPDRPRTFD-- 382
Query: 221 NMHSLENSLIDIMRAEHDPLKGRLSYPHPGTDNLLMLN--------GRSSLFPIDDGLLD 272
MHSLE+SLIDIMRAE+D +KGRL+Y +PG+D+ L++N G+SSLFP++DG LD
Sbjct: 383 -MHSLESSLIDIMRAENDTIKGRLNYSYPGSDSSLLINARTYGRRRGQSSLFPMEDGFLD 441
Query: 273 DGHSDQV--GVLNSPTCYSAHQNGERIERFSRKVFVGGLPPDIDEDEITASFRRFGPLVV 330
DG DQ L SP C+S HQNGER+ER+SRKVFVGGLPPDIDEDEITASFRRFGPL+V
Sbjct: 442 DGRGDQPLHSGLGSPHCFS-HQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIV 500
Query: 331 DWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRP 390
DWPHKAESKSYFPPKGYAFLLFQ+ESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRP
Sbjct: 501 DWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRP 560
Query: 391 WNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKY 450
WNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKY
Sbjct: 561 WNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKY 620
Query: 451 PKGAGRVAFSNQQSYIAAISARFVQLQHGDIDKRVEVKPYVLDDQMCDECQGARCGGKFA 510
PKGAGRVAFSNQQSYIAAISARFVQLQHG+IDKRVEVKPYVLDDQ+CDECQGARCGGKFA
Sbjct: 621 PKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGGKFA 680
Query: 511 PFFCANVTCLQYYCEFCWANIHSRAGREFHKPLVKEGADRPRQIHFRWN 559
PFFCANVTCLQYYCE+CWA IHSRAGREFHKPLVKEG DRPR I FRWN
Sbjct: 681 PFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN 729
>gi|119395725 cytoplasmic polyadenylation element binding protein 1
isoform 1 [Homo sapiens]
Length = 561
Score = 214 bits (544), Expect = 2e-55
Identities = 119/282 (42%), Positives = 168/282 (59%), Gaps = 16/282 (5%)
Query: 278 QVGVLNSPTCYSAHQNGERIER---FSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPH 334
Q +N TC + Q R + +S KVF+GG+P DI E + +FR FG L V+WP
Sbjct: 284 QAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPG 343
Query: 335 KAESKSYFPPKGYAFLLFQEESSVQALIDAC----IEEDG--KLYLCVSSPTIKDKPVQI 388
K PPKGY +L+F+ E SV++L+ AC + DG + Y +SS ++ K VQ+
Sbjct: 344 KDGKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQV 403
Query: 389 RPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPEL 448
PW L+DS+FV SQ LDP +T+FVG + L A LA I++ L+GGV YAGIDTD
Sbjct: 404 IPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKH- 462
Query: 449 KYPKGAGRVAFSNQQSYIAAISARFVQLQHGDIDKRVEVKPYVLDDQMCDECQGARCGGK 508
KYP G+GRV F+NQ+SY+ A+SA FV+++ K+V++ PY L+D +C C +
Sbjct: 463 KYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPY-LEDSLCH-----ICSSQ 516
Query: 509 FAPFFCANVTCLQYYCEFCWANIHSRAGREFHKPLVKEGADR 550
PFFC + C +Y+C CW HS G H PL++ +R
Sbjct: 517 PGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNR 558
>gi|119395722 cytoplasmic polyadenylation element binding protein 1
isoform 3 [Homo sapiens]
Length = 486
Score = 214 bits (544), Expect = 2e-55
Identities = 119/282 (42%), Positives = 168/282 (59%), Gaps = 16/282 (5%)
Query: 278 QVGVLNSPTCYSAHQNGERIER---FSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPH 334
Q +N TC + Q R + +S KVF+GG+P DI E + +FR FG L V+WP
Sbjct: 209 QAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPG 268
Query: 335 KAESKSYFPPKGYAFLLFQEESSVQALIDAC----IEEDG--KLYLCVSSPTIKDKPVQI 388
K PPKGY +L+F+ E SV++L+ AC + DG + Y +SS ++ K VQ+
Sbjct: 269 KDGKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQV 328
Query: 389 RPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPEL 448
PW L+DS+FV SQ LDP +T+FVG + L A LA I++ L+GGV YAGIDTD
Sbjct: 329 IPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKH- 387
Query: 449 KYPKGAGRVAFSNQQSYIAAISARFVQLQHGDIDKRVEVKPYVLDDQMCDECQGARCGGK 508
KYP G+GRV F+NQ+SY+ A+SA FV+++ K+V++ PY L+D +C C +
Sbjct: 388 KYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPY-LEDSLCH-----ICSSQ 441
Query: 509 FAPFFCANVTCLQYYCEFCWANIHSRAGREFHKPLVKEGADR 550
PFFC + C +Y+C CW HS G H PL++ +R
Sbjct: 442 PGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNR 483
>gi|119395720 cytoplasmic polyadenylation element binding protein 1
isoform 3 [Homo sapiens]
Length = 486
Score = 214 bits (544), Expect = 2e-55
Identities = 119/282 (42%), Positives = 168/282 (59%), Gaps = 16/282 (5%)
Query: 278 QVGVLNSPTCYSAHQNGERIER---FSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPH 334
Q +N TC + Q R + +S KVF+GG+P DI E + +FR FG L V+WP
Sbjct: 209 QAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPG 268
Query: 335 KAESKSYFPPKGYAFLLFQEESSVQALIDAC----IEEDG--KLYLCVSSPTIKDKPVQI 388
K PPKGY +L+F+ E SV++L+ AC + DG + Y +SS ++ K VQ+
Sbjct: 269 KDGKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQV 328
Query: 389 RPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPEL 448
PW L+DS+FV SQ LDP +T+FVG + L A LA I++ L+GGV YAGIDTD
Sbjct: 329 IPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKH- 387
Query: 449 KYPKGAGRVAFSNQQSYIAAISARFVQLQHGDIDKRVEVKPYVLDDQMCDECQGARCGGK 508
KYP G+GRV F+NQ+SY+ A+SA FV+++ K+V++ PY L+D +C C +
Sbjct: 388 KYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPY-LEDSLCH-----ICSSQ 441
Query: 509 FAPFFCANVTCLQYYCEFCWANIHSRAGREFHKPLVKEGADR 550
PFFC + C +Y+C CW HS G H PL++ +R
Sbjct: 442 PGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNR 483
>gi|119395718 cytoplasmic polyadenylation element binding protein 1
isoform 2 [Homo sapiens]
Length = 491
Score = 207 bits (528), Expect = 2e-53
Identities = 119/287 (41%), Positives = 168/287 (58%), Gaps = 21/287 (7%)
Query: 278 QVGVLNSPTCYSAHQNGERIER---FSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPH 334
Q +N TC + Q R + +S KVF+GG+P DI E + +FR FG L V+WP
Sbjct: 209 QAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPG 268
Query: 335 KAESKSYFPPKG-----YAFLLFQEESSVQALIDAC----IEEDG--KLYLCVSSPTIKD 383
K PPKG Y +L+F+ E SV++L+ AC + DG + Y +SS ++
Sbjct: 269 KDGKHPRCPPKGNMPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRC 328
Query: 384 KPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGID 443
K VQ+ PW L+DS+FV SQ LDP +T+FVG + L A LA I++ L+GGV YAGID
Sbjct: 329 KEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGID 388
Query: 444 TDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGDIDKRVEVKPYVLDDQMCDECQGA 503
TD KYP G+GRV F+NQ+SY+ A+SA FV+++ K+V++ PY L+D +C
Sbjct: 389 TDKH-KYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPY-LEDSLCH----- 441
Query: 504 RCGGKFAPFFCANVTCLQYYCEFCWANIHSRAGREFHKPLVKEGADR 550
C + PFFC + C +Y+C CW HS G H PL++ +R
Sbjct: 442 ICSSQPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNR 488
>gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3
[Homo sapiens]
Length = 1125
Score = 52.4 bits (124), Expect = 1e-06
Identities = 46/116 (39%), Positives = 48/116 (41%), Gaps = 17/116 (14%)
Query: 2 PPPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVP 61
PPP P GF P M F P V P G GL GG G G GGP
Sbjct: 868 PPPGP---GGFAMPPPHGMKGPFPPHGPFVRPGGMPGL-----GGPGPGPGGPEDRDGRQ 919
Query: 62 PPPPPAMNIPQQQPPP--PAAPQQPQSRRSPVS---PQLQQQHQAAAAAFLQQRNS 112
PP PQQQP P P PQQ Q ++ P S P QQQ Q QQ NS
Sbjct: 920 QPPQQ----PQQQPQPQAPQQPQQQQQQQPPPSQQPPPTQQQPQQFRNDNRQQFNS 971
Score = 43.5 bits (101), Expect = 5e-04
Identities = 49/164 (29%), Positives = 59/164 (35%), Gaps = 35/164 (21%)
Query: 3 PPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVP----TSGGGGGGFGGPFSAT 58
PP P + + G P F+ PHG G P GG G GGP
Sbjct: 855 PPRPMPPHMMHRGPPPGPG-----GFAMPPPHGMKGPFPPHGPFVRPGGMPGLGGP---- 905
Query: 59 AVPPPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQRNSYNHHQP 118
P P P +QQP PQQPQ + P +PQ QQ Q QQ+ + P
Sbjct: 906 -GPGPGGPEDRDGRQQP-----PQQPQQQPQPQAPQQPQQQQ-------QQQPPPSQQPP 952
Query: 119 LLKQSPW----SNHQSSGWGT-----GSMSWGAMHGRDHRRTGN 153
+Q P N Q G G S+G D R GN
Sbjct: 953 PTQQQPQQFRNDNRQQFNSGRDQERFGRRSFGNRVENDRERYGN 996
Score = 33.5 bits (75), Expect = 0.53
Identities = 52/211 (24%), Positives = 79/211 (37%), Gaps = 54/211 (25%)
Query: 2 PPPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVP 61
PP P + G P + ++ P P+F+P L +P G G G VP
Sbjct: 679 PPQVPPHQPG--PPVVGALQP---PAFTPP-------LGIPPPGFGPG----------VP 716
Query: 62 PPPPP---------AMNIP----QQQPPPPAAPQQPQSRRSPVSPQLQQQHQAAAA---- 104
PPPPP M++P PPPP P P S P +P + + + A
Sbjct: 717 PPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITP--PVSIPPPHTPPISIPNLVSGARGNA 774
Query: 105 ----AFLQQRNSYNHHQPLLKQSPWSNHQSSGWGTGSMSWGAMHGRDHRRTGNMGI-PGT 159
+ ++ P +P S GT ++ G + G TG +G PG
Sbjct: 775 ESGDSVKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQAPSTGLLGARPG- 833
Query: 160 MNQISPLKKPFSGNVIAPPKFTRSTPSLTPK 190
+ PL++P PP + P + P+
Sbjct: 834 ---LIPLQRPPG----MPPPHLQRFPLMPPR 857
Score = 30.8 bits (68), Expect = 3.4
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 26/83 (31%)
Query: 1 MPPPSPDSENGFYPGLPSSMNPAFF--PSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSAT 58
+PPP GF PG+P P F P F+P+ H G P GP
Sbjct: 706 IPPP------GFGPGVPPPPPPPPFLRPGFNPM--HLPPGFLPP----------GP---- 743
Query: 59 AVPPPPPPAMNIPQQQPPPPAAP 81
PPP P ++IP PP + P
Sbjct: 744 --PPPITPPVSIPPPHTPPISIP 764
Score = 29.6 bits (65), Expect = 7.6
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 61 PPPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQRNSYNHHQPLL 120
PPPP + P Q P + P PQ S + Q Q LQQ QP
Sbjct: 155 PPPPVKVSSEPPTQATPNSVPAVPQLPSSDAFAAVAQLFQTTQGQQLQQ-ILQTFQQPPK 213
Query: 121 KQSP 124
QSP
Sbjct: 214 PQSP 217
Score = 29.3 bits (64), Expect = 10.0
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 56 SATAVPPPPPPAMNIPQQQPPPPAAPQQPQS--------RRSPVSPQLQQQHQAAAAAFL 107
+A A PP P +P P A+P PQ+ + P Q Q Q
Sbjct: 288 TAPAAAVPPAPTATVPAAAAPAAASPPPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRMMG 347
Query: 108 QQRNSYNHHQPL 119
Q++ +H PL
Sbjct: 348 IQQDPMHHQVPL 359
>gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2
[Homo sapiens]
Length = 1132
Score = 52.4 bits (124), Expect = 1e-06
Identities = 46/116 (39%), Positives = 48/116 (41%), Gaps = 17/116 (14%)
Query: 2 PPPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVP 61
PPP P GF P M F P V P G GL GG G G GGP
Sbjct: 875 PPPGP---GGFAMPPPHGMKGPFPPHGPFVRPGGMPGL-----GGPGPGPGGPEDRDGRQ 926
Query: 62 PPPPPAMNIPQQQPPP--PAAPQQPQSRRSPVS---PQLQQQHQAAAAAFLQQRNS 112
PP PQQQP P P PQQ Q ++ P S P QQQ Q QQ NS
Sbjct: 927 QPPQQ----PQQQPQPQAPQQPQQQQQQQPPPSQQPPPTQQQPQQFRNDNRQQFNS 978
Score = 43.5 bits (101), Expect = 5e-04
Identities = 49/164 (29%), Positives = 59/164 (35%), Gaps = 35/164 (21%)
Query: 3 PPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVP----TSGGGGGGFGGPFSAT 58
PP P + + G P F+ PHG G P GG G GGP
Sbjct: 862 PPRPMPPHMMHRGPPPGPG-----GFAMPPPHGMKGPFPPHGPFVRPGGMPGLGGP---- 912
Query: 59 AVPPPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQRNSYNHHQP 118
P P P +QQP PQQPQ + P +PQ QQ Q QQ+ + P
Sbjct: 913 -GPGPGGPEDRDGRQQP-----PQQPQQQPQPQAPQQPQQQQ-------QQQPPPSQQPP 959
Query: 119 LLKQSPW----SNHQSSGWGT-----GSMSWGAMHGRDHRRTGN 153
+Q P N Q G G S+G D R GN
Sbjct: 960 PTQQQPQQFRNDNRQQFNSGRDQERFGRRSFGNRVENDRERYGN 1003
Score = 32.7 bits (73), Expect = 0.90
Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 37/107 (34%)
Query: 2 PPPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVP 61
PP P + G P + ++ P P+F+P L +P G G G VP
Sbjct: 664 PPQVPPHQPG--PPVVGALQP---PAFTPP-------LGIPPPGFGPG----------VP 701
Query: 62 PPPPP---------AMNIP----QQQPPPPAAPQQPQSRRSPVSPQL 95
PPPPP M++P PPPP P P S P +P +
Sbjct: 702 PPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITP--PVSIPPPHTPPI 746
Score = 30.8 bits (68), Expect = 3.4
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 26/83 (31%)
Query: 1 MPPPSPDSENGFYPGLPSSMNPAFF--PSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSAT 58
+PPP GF PG+P P F P F+P+ H G P GP
Sbjct: 691 IPPP------GFGPGVPPPPPPPPFLRPGFNPM--HLPPGFLPP----------GP---- 728
Query: 59 AVPPPPPPAMNIPQQQPPPPAAP 81
PPP P ++IP PP + P
Sbjct: 729 --PPPITPPVSIPPPHTPPISIP 749
Score = 29.6 bits (65), Expect = 7.6
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 61 PPPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQRNSYNHHQPLL 120
PPPP + P Q P + P PQ S + Q Q LQQ QP
Sbjct: 140 PPPPVKVSSEPPTQATPNSVPAVPQLPSSDAFAAVAQLFQTTQGQQLQQ-ILQTFQQPPK 198
Query: 121 KQSP 124
QSP
Sbjct: 199 PQSP 202
Score = 29.3 bits (64), Expect = 10.0
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 56 SATAVPPPPPPAMNIPQQQPPPPAAPQQPQS--------RRSPVSPQLQQQHQAAAAAFL 107
+A A PP P +P P A+P PQ+ + P Q Q Q
Sbjct: 273 TAPAAAVPPAPTATVPAAAAPAAASPPPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRMMG 332
Query: 108 QQRNSYNHHQPL 119
Q++ +H PL
Sbjct: 333 IQQDPMHHQVPL 344
>gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1
[Homo sapiens]
Length = 1147
Score = 52.4 bits (124), Expect = 1e-06
Identities = 46/116 (39%), Positives = 48/116 (41%), Gaps = 17/116 (14%)
Query: 2 PPPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVP 61
PPP P GF P M F P V P G GL GG G G GGP
Sbjct: 890 PPPGP---GGFAMPPPHGMKGPFPPHGPFVRPGGMPGL-----GGPGPGPGGPEDRDGRQ 941
Query: 62 PPPPPAMNIPQQQPPP--PAAPQQPQSRRSPVS---PQLQQQHQAAAAAFLQQRNS 112
PP PQQQP P P PQQ Q ++ P S P QQQ Q QQ NS
Sbjct: 942 QPPQQ----PQQQPQPQAPQQPQQQQQQQPPPSQQPPPTQQQPQQFRNDNRQQFNS 993
Score = 43.5 bits (101), Expect = 5e-04
Identities = 49/164 (29%), Positives = 59/164 (35%), Gaps = 35/164 (21%)
Query: 3 PPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVP----TSGGGGGGFGGPFSAT 58
PP P + + G P F+ PHG G P GG G GGP
Sbjct: 877 PPRPMPPHMMHRGPPPGPG-----GFAMPPPHGMKGPFPPHGPFVRPGGMPGLGGP---- 927
Query: 59 AVPPPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQRNSYNHHQP 118
P P P +QQP PQQPQ + P +PQ QQ Q QQ+ + P
Sbjct: 928 -GPGPGGPEDRDGRQQP-----PQQPQQQPQPQAPQQPQQQQ-------QQQPPPSQQPP 974
Query: 119 LLKQSPW----SNHQSSGWGT-----GSMSWGAMHGRDHRRTGN 153
+Q P N Q G G S+G D R GN
Sbjct: 975 PTQQQPQQFRNDNRQQFNSGRDQERFGRRSFGNRVENDRERYGN 1018
Score = 32.7 bits (73), Expect = 0.90
Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 37/107 (34%)
Query: 2 PPPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVP 61
PP P + G P + ++ P P+F+P L +P G G G VP
Sbjct: 679 PPQVPPHQPG--PPVVGALQP---PAFTPP-------LGIPPPGFGPG----------VP 716
Query: 62 PPPPP---------AMNIP----QQQPPPPAAPQQPQSRRSPVSPQL 95
PPPPP M++P PPPP P P S P +P +
Sbjct: 717 PPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITP--PVSIPPPHTPPI 761
Score = 30.8 bits (68), Expect = 3.4
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 26/83 (31%)
Query: 1 MPPPSPDSENGFYPGLPSSMNPAFF--PSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSAT 58
+PPP GF PG+P P F P F+P+ H G P GP
Sbjct: 706 IPPP------GFGPGVPPPPPPPPFLRPGFNPM--HLPPGFLPP----------GP---- 743
Query: 59 AVPPPPPPAMNIPQQQPPPPAAP 81
PPP P ++IP PP + P
Sbjct: 744 --PPPITPPVSIPPPHTPPISIP 764
Score = 29.6 bits (65), Expect = 7.6
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 61 PPPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQRNSYNHHQPLL 120
PPPP + P Q P + P PQ S + Q Q LQQ QP
Sbjct: 155 PPPPVKVSSEPPTQATPNSVPAVPQLPSSDAFAAVAQLFQTTQGQQLQQ-ILQTFQQPPK 213
Query: 121 KQSP 124
QSP
Sbjct: 214 PQSP 217
Score = 29.3 bits (64), Expect = 10.0
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 56 SATAVPPPPPPAMNIPQQQPPPPAAPQQPQS--------RRSPVSPQLQQQHQAAAAAFL 107
+A A PP P +P P A+P PQ+ + P Q Q Q
Sbjct: 288 TAPAAAVPPAPTATVPAAAAPAAASPPPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRMMG 347
Query: 108 QQRNSYNHHQPL 119
Q++ +H PL
Sbjct: 348 IQQDPMHHQVPL 359
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 47.8 bits (112), Expect = 3e-05
Identities = 32/83 (38%), Positives = 35/83 (42%), Gaps = 24/83 (28%)
Query: 38 GLSVPTSGGGGGGFGGPFSATAVPPPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQ 97
G PTS G GGP PPPPPP PPPP PQ P P+SPQ
Sbjct: 525 GPQAPTSPNGRPMQGGP------PPPPPPP-------PPPPGPPQMPMPVHEPLSPQQ-- 569
Query: 98 QHQAAAAAFLQQRNSYNHHQPLL 120
LQQ++ YN P L
Sbjct: 570 ---------LQQQDMYNKKIPSL 583
Score = 35.4 bits (80), Expect = 0.14
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 62 PPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSP 93
PPPPP+ + P PPPP+ P P P SP
Sbjct: 8 PPPPPSESPPPPSPPPPSTPSPP-----PCSP 34
>gi|38261971 cyclic AMP-regulated phosphoprotein, 21 kD isoform 1
[Homo sapiens]
Length = 812
Score = 47.8 bits (112), Expect = 3e-05
Identities = 39/123 (31%), Positives = 52/123 (42%), Gaps = 15/123 (12%)
Query: 5 SPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVPPPP 64
+P+ +G P PSS+ P P+ P TG +PT GG G G P S + PPP
Sbjct: 569 TPEPPSG--PVYPSSLMPQ--PAQQPSYVIASTGQQLPT--GGFSGSGPPISQQVLQPPP 622
Query: 65 PPAMNIPQQQPPPPAAP-------QQPQSRRSPVSPQLQQQHQAAAAAFLQQRNSYNHHQ 117
P + QQPPP P Q P S P Q+ A + + Q +Q
Sbjct: 623 SPQGFV--QQPPPAQMPVYYYPSGQYPTSTTQQYRPMAPVQYNAQRSQQMPQAAQQAGYQ 680
Query: 118 PLL 120
P+L
Sbjct: 681 PVL 683
>gi|22027541 programmed cell death 7 [Homo sapiens]
Length = 485
Score = 47.8 bits (112), Expect = 3e-05
Identities = 36/113 (31%), Positives = 42/113 (37%), Gaps = 22/113 (19%)
Query: 2 PPPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVP----------------TSG 45
PPP P F P +PAF P P P G S P + G
Sbjct: 15 PPPQPPPPAPFGCPPPPLPSPAFPPPL-PQRPGPFPGASAPFLQPPLALQPRASAEASRG 73
Query: 46 GGGGGFGGPFSATAVPPPPPPAMNIP-----QQQPPPPAAPQQPQSRRSPVSP 93
GGG G P +PPPPP P ++ PPP P P S R P +P
Sbjct: 74 GGGAGAFYPVPPPPLPPPPPQCRPFPGTDAGERPRPPPPGPGPPWSPRWPEAP 126
Score = 35.4 bits (80), Expect = 0.14
Identities = 29/89 (32%), Positives = 35/89 (39%), Gaps = 21/89 (23%)
Query: 54 PFSATAVPPPPPPAMNIPQQQPPPPA-----APQQPQSRRSPVSPQLQQQHQAAAAAFLQ 108
PF P PPPP QPPPPA P P P PQ A+A FL
Sbjct: 5 PFFGQGRPGPPPP-------QPPPPAPFGCPPPPLPSPAFPPPLPQRPGPFPGASAPFL- 56
Query: 109 QRNSYNHHQPLLKQSPWSNHQSSGWGTGS 137
QP L P ++ ++S G G+
Sbjct: 57 --------QPPLALQPRASAEASRGGGGA 77
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 47.0 bits (110), Expect = 5e-05
Identities = 26/50 (52%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 46 GGGGGFGGPFSATAVP-PPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQ 94
GGGG G AT P PPPPP PQQQPPPP P P P PQ
Sbjct: 5 GGGGRPGESPGATPAPGPPPPPPPAPPQQQPPPPPPPAPPPG-PGPAPPQ 53
Score = 33.1 bits (74), Expect = 0.69
Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 52 GGPFSATAVPPPPPPAMNIPQQQPP--PPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQ 109
G P PP P PA P PP PP AP P++ R+ SP A L
Sbjct: 753 GSPRLVRRPPPGPAPAAASPGPPPPASPPGAPASPRAPRT--SPYGGLPAAPLAGPALPA 810
Query: 110 RNSYNHHQPLLKQSPWSNHQSSG 132
R +PL P H + G
Sbjct: 811 RRLSRASRPLSASQPSLPHGAPG 833
Score = 29.3 bits (64), Expect = 10.0
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 10/27 (37%)
Query: 61 PPPPPPAMNIPQQQPPP---PAAPQQP 84
PPPPPPA PPP PA PQ P
Sbjct: 36 PPPPPPA-------PPPGPGPAPPQHP 55
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 47.0 bits (110), Expect = 5e-05
Identities = 32/97 (32%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 2 PPPSPDSENG---FYPGLPSSMNPA---FFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPF 55
PPP P + P P+++ P P+ VS G + P G GG G G
Sbjct: 6 PPPPPQQQQQQQQLSPPPPAALAPVSGVVLPAPPAVSA-GSSPAGSPGGGAGGEGLGAAA 64
Query: 56 SATAVPPPPPPAMNIPQQQPPPPAAPQQPQSRRSPVS 92
+A + PPPPP PPPP P P S +P S
Sbjct: 65 AALLLHPPPPPP-PATAAPPPPPPPPPPPASAAAPAS 100
Score = 33.5 bits (75), Expect = 0.53
Identities = 15/22 (68%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 61 PPPPPPAMNIPQQQ--PPPPAA 80
PPPPPP QQQ PPPPAA
Sbjct: 5 PPPPPPQQQQQQQQLSPPPPAA 26
>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
isoform d [Homo sapiens]
Length = 756
Score = 47.0 bits (110), Expect = 5e-05
Identities = 38/125 (30%), Positives = 49/125 (39%), Gaps = 27/125 (21%)
Query: 2 PPPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVP 61
P S ++N PG ++ + S+SP P S GG+ ++A P
Sbjct: 624 PGASTYNKNSNIPGSSANTSTPTVSSYSPPQP------SYSQPPYNQGGYSQGYTAPPPP 677
Query: 62 PPPPPAMN---------IPQQQPPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQRNS 112
PPPPPA N P PPPP A PQ P Q QQ + QQ N
Sbjct: 678 PPPPPAYNYGSYGGYNPAPYTPPPPPTAQTYPQ----PSYNQYQQ--------YAQQWNQ 725
Query: 113 YNHHQ 117
Y +Q
Sbjct: 726 YYQNQ 730
Score = 32.3 bits (72), Expect = 1.2
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 61 PPP--PPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQQHQ----AAAAAFLQQRNSYN 114
PPP PPP PQQ PPPP+ R+P ++ ++A +SY+
Sbjct: 596 PPPQQPPPPQPPPQQPPPPPSY----SPARNPPGASTYNKNSNIPGSSANTSTPTVSSYS 651
Query: 115 HHQPLLKQSPWS 126
QP Q P++
Sbjct: 652 PPQPSYSQPPYN 663
>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
isoform a [Homo sapiens]
Length = 856
Score = 47.0 bits (110), Expect = 5e-05
Identities = 38/125 (30%), Positives = 49/125 (39%), Gaps = 27/125 (21%)
Query: 2 PPPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVP 61
P S ++N PG ++ + S+SP P S GG+ ++A P
Sbjct: 724 PGASTYNKNSNIPGSSANTSTPTVSSYSPPQP------SYSQPPYNQGGYSQGYTAPPPP 777
Query: 62 PPPPPAMN---------IPQQQPPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQRNS 112
PPPPPA N P PPPP A PQ P Q QQ + QQ N
Sbjct: 778 PPPPPAYNYGSYGGYNPAPYTPPPPPTAQTYPQ----PSYNQYQQ--------YAQQWNQ 825
Query: 113 YNHHQ 117
Y +Q
Sbjct: 826 YYQNQ 830
Score = 32.3 bits (72), Expect = 1.2
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 61 PPP--PPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQQHQ----AAAAAFLQQRNSYN 114
PPP PPP PQQ PPPP+ R+P ++ ++A +SY+
Sbjct: 696 PPPQQPPPPQPPPQQPPPPPSY----SPARNPPGASTYNKNSNIPGSSANTSTPTVSSYS 751
Query: 115 HHQPLLKQSPWS 126
QP Q P++
Sbjct: 752 PPQPSYSQPPYN 763
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 46.6 bits (109), Expect = 6e-05
Identities = 29/69 (42%), Positives = 31/69 (44%), Gaps = 22/69 (31%)
Query: 42 PTSGGGGGGFG----------------GPFSATAVPP--PPPPAMNIPQQQPPPPAAPQQ 83
P SGGGGGG G P S PP PPPP PQQQPPPP P Q
Sbjct: 94 PGSGGGGGGLGPGAHGYGPSPIDLWLDAPRSCRMEPPDGPPPP----PQQQPPPPPQPPQ 149
Query: 84 PQSRRSPVS 92
P + + S
Sbjct: 150 PAPQATSCS 158
>gi|56118221 amyloid beta (A4) precursor protein-binding, family B,
member 1 interacting protein [Homo sapiens]
Length = 666
Score = 46.6 bits (109), Expect = 6e-05
Identities = 26/80 (32%), Positives = 31/80 (38%)
Query: 14 PGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVPPPPPPAMNIPQQ 73
P P S P P G + G GGGG P PPPPPP ++ P+
Sbjct: 509 PHAPKSSLPPPPPVRRSSDTSGSPATPLKAKGTGGGGLPAPPDDFLPPPPPPPPLDDPEL 568
Query: 74 QPPPPAAPQQPQSRRSPVSP 93
PPPP + P P P
Sbjct: 569 PPPPPDFMEPPPDFVPPPPP 588
Score = 40.4 bits (93), Expect = 0.004
Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 28/101 (27%)
Query: 2 PPPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVP 61
PPP P + P P M P P F P P G++ + +P
Sbjct: 558 PPPPPLDDPELPPPPPDFMEPP--PDFVPPPPPSYAGIA----------------GSELP 599
Query: 62 PPPPP-----AMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQ 97
PPPPP +P PPPA ++P PV P+ Q+
Sbjct: 600 PPPPPPPAPAPAPVPDSARPPPAVAKRP-----PVPPKRQE 635
Score = 31.6 bits (70), Expect = 2.0
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 44 SGGGGGGFGGPFSATAV--------PPPPPPAMNIPQQQPPPPAAPQQPQSRRS 89
SG G+G +AT + PPP P +++P PPP Q+ + ++
Sbjct: 105 SGAASLGYGTNVAATGISQYEDDLPPPPADPVLDLPLPPPPPEPLSQEEEEAQA 158
>gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
sapiens]
Length = 316
Score = 46.2 bits (108), Expect = 8e-05
Identities = 30/84 (35%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 8 SENGFYPGLP-SSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVPPPPPP 66
S +G PGLP +S+ P P F+P PH PTS G G + +PPP P
Sbjct: 175 SRSGTVPGLPPASLQPLRVPYFAPPGPHD------PTSRGPGRLLTREPPSRKLPPPLPL 228
Query: 67 AMNIPQQQPPPPAAPQQPQSRRSP 90
+ PPPP AP P + P
Sbjct: 229 CRSRWVLAPPPPPAPPGPNAAAHP 252
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 46.2 bits (108), Expect = 8e-05
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 16/189 (8%)
Query: 303 KVFVGGLPPDIDEDEITASFRRFGPLV--VDWPHKAESKSYFPPKGYAFLLFQEESSVQA 360
K+FVGGL ++ + + F ++G +V V K ++S +G+ F+ F++ + V
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQS----RGFGFVKFKDPNCVGT 66
Query: 361 LIDACIEE-DGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPR 419
++ + DG+ +P + RP D S+ IFVGG+P
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKS----NKIFVGGIPH 122
Query: 420 PLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHG 479
EL + +G V + D E + P+G G + F ++QS A++ F H
Sbjct: 123 NCGETELREYFKK-FGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHF----HD 177
Query: 480 DIDKRVEVK 488
+ K+VEVK
Sbjct: 178 IMGKKVEVK 186
Score = 43.1 bits (100), Expect = 7e-04
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 292 QNGERIERF-SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAF 349
Q G R + S K+FVGG+P + E E+ F++FG + V + AE + P+G+ F
Sbjct: 102 QKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQR---PRGFGF 158
Query: 350 LLFQEESSVQALID 363
+ F++E SV ++
Sbjct: 159 ITFEDEQSVDQAVN 172
Score = 40.8 bits (94), Expect = 0.003
Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 4 PSPDSENGFYP---GLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGP--FSAT 58
P+ + G+ P G + P F S+ +P G P G G+G P FS
Sbjct: 238 PAGQAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPG----GFPPPQGFPQGYGAPPQFSFG 293
Query: 59 AVPPPPPPAMNIPQQQPPPPAAP 81
PPPPPP P PPPPA P
Sbjct: 294 YGPPPPPPDQFAPPGVPPPPATP 316
Score = 37.4 bits (85), Expect = 0.037
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 34 HGCTGLSVPTSGGGGGGFGGPFSATAVPPPPPPAMNIPQQQPPPPAAPQQ--PQSRRSP 90
+G G+ VP +G GG+G P + PPPPPP + PP P Q PQ +P
Sbjct: 230 YGPQGMWVP-AGQAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAP 287
Score = 29.6 bits (65), Expect = 7.6
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 50 GFGGP------FSATAVPPPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSP 93
G+G P F+ VPPPP P PPPP+ S+ P
Sbjct: 293 GYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQP 342
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 46.2 bits (108), Expect = 8e-05
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 16/189 (8%)
Query: 303 KVFVGGLPPDIDEDEITASFRRFGPLV--VDWPHKAESKSYFPPKGYAFLLFQEESSVQA 360
K+FVGGL ++ + + F ++G +V V K ++S +G+ F+ F++ + V
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQS----RGFGFVKFKDPNCVGT 66
Query: 361 LIDACIEE-DGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPR 419
++ + DG+ +P + RP D S+ IFVGG+P
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKS----NKIFVGGIPH 122
Query: 420 PLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHG 479
EL + +G V + D E + P+G G + F ++QS A++ F H
Sbjct: 123 NCGETELREYFKK-FGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHF----HD 177
Query: 480 DIDKRVEVK 488
+ K+VEVK
Sbjct: 178 IMGKKVEVK 186
Score = 43.1 bits (100), Expect = 7e-04
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 292 QNGERIERF-SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAF 349
Q G R + S K+FVGG+P + E E+ F++FG + V + AE + P+G+ F
Sbjct: 102 QKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQR---PRGFGF 158
Query: 350 LLFQEESSVQALID 363
+ F++E SV ++
Sbjct: 159 ITFEDEQSVDQAVN 172
Score = 40.8 bits (94), Expect = 0.003
Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 4 PSPDSENGFYP---GLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGP--FSAT 58
P+ + G+ P G + P F S+ +P G P G G+G P FS
Sbjct: 238 PAGQAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPG----GFPPPQGFPQGYGAPPQFSFG 293
Query: 59 AVPPPPPPAMNIPQQQPPPPAAP 81
PPPPPP P PPPPA P
Sbjct: 294 YGPPPPPPDQFAPPGVPPPPATP 316
Score = 37.4 bits (85), Expect = 0.037
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 34 HGCTGLSVPTSGGGGGGFGGPFSATAVPPPPPPAMNIPQQQPPPPAAPQQ--PQSRRSP 90
+G G+ VP +G GG+G P + PPPPPP + PP P Q PQ +P
Sbjct: 230 YGPQGMWVP-AGQAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAP 287
Score = 29.6 bits (65), Expect = 7.6
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 50 GFGGP------FSATAVPPPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSP 93
G+G P F+ VPPPP P PPPP+ S+ P
Sbjct: 293 GYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQP 342
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 45.4 bits (106), Expect = 1e-04
Identities = 33/98 (33%), Positives = 39/98 (39%), Gaps = 8/98 (8%)
Query: 2 PPPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVP 61
PPPSP + F P ++P+ P L VP S P S +A P
Sbjct: 667 PPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASP----PMSPSATP 722
Query: 62 PP--PPPAMNIPQQQPPPPAA--PQQPQSRRSPVSPQL 95
PP PPP P Q PP P A P P + P P L
Sbjct: 723 PPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPL 760
Score = 36.6 bits (83), Expect = 0.062
Identities = 32/94 (34%), Positives = 35/94 (37%), Gaps = 23/94 (24%)
Query: 2 PPPSPDSENGFYP--GLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATA 59
PPP P LPS PA FP +P SP P S A
Sbjct: 784 PPPQAPPALATPPLQALPSP--PASFPGQAPFSPSASL----------------PMSPLA 825
Query: 60 VPPPP-PPAMNIP--QQQPPPPAAPQQPQSRRSP 90
PPP PP + P Q P PPA+P RR P
Sbjct: 826 TPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPP 859
Score = 35.4 bits (80), Expect = 0.14
Identities = 32/95 (33%), Positives = 40/95 (42%), Gaps = 16/95 (16%)
Query: 3 PPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVPP 62
PPSP P P M+P+ P P L VP S P S +A PP
Sbjct: 707 PPSP-------PASPP-MSPSATPPPQAPPPLAAPPLQVPPSPPASP----PMSPSATPP 754
Query: 63 PP-PPAMNIP--QQQPPPPAA-PQQPQSRRSPVSP 93
P PP + P Q P PPA+ P P ++ P +P
Sbjct: 755 PRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAP 789
Score = 33.1 bits (74), Expect = 0.69
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 54 PFSATAVPPPP-PPAMNIP--QQQPPPPAAPQ-QPQSRRSPVSPQLQQQH 99
P S A PPP PP + +P Q P PPA+P P + SP +P H
Sbjct: 610 PLSPLATPPPQAPPXLALPPLQAPPSPPASPPLSPLATPSPQAPNALAVH 659
Score = 32.3 bits (72), Expect = 1.2
Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 27/106 (25%)
Query: 2 PPPSPDSENGFY----PGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSA 57
PP SP + P L +S++PA P SP++ H LS S P S+
Sbjct: 451 PPDSPPLQAPLSLPASPPLQTSLSPAVSPLSSPLTIHPLQALSSLASHSP----QAPLSS 506
Query: 58 TAVPP--------PP-----------PPAMNIPQQQPPPPAAPQQP 84
+PP PP PP N+P PPP P
Sbjct: 507 LIMPPLETQSSLAPPSLQTPPASLTTPPLENLPSLAPPPLQTASAP 552
Score = 32.0 bits (71), Expect = 1.5
Identities = 36/121 (29%), Positives = 45/121 (37%), Gaps = 27/121 (22%)
Query: 2 PPPSPDSENGFYPGLPSSMNPAFFPSFSPV---SPHGCTGLSV-----PTSGGGGGGFGG 53
PPP P L + +P P SP+ SP L+V P S
Sbjct: 617 PPPQAPPXLAL-PPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQA 675
Query: 54 PFSATAVPP------PP---PPAMNIPQQQPPP---------PAAPQQPQSRRSPVSPQL 95
PFS A PP PP PP++ P Q PP P+A PQ+ +P L
Sbjct: 676 PFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPL 735
Query: 96 Q 96
Q
Sbjct: 736 Q 736
Score = 31.6 bits (70), Expect = 2.0
Identities = 31/89 (34%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 3 PPSPDSENGFYPGL-PSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVP 61
PP D+ P L P S +P PS P G VP P AT +P
Sbjct: 287 PPRKDAA----PALGPLSSSPLATPS-----PSGTKARPVPPPDNAAT----PLPAT-LP 332
Query: 62 PPPPPAMNIPQQQPPPPAAPQQPQSRRSP 90
P PP A +P PP P+AP Q+ SP
Sbjct: 333 PSPPLATPLP-LAPPSPSAPPSLQTLPSP 360
Score = 29.6 bits (65), Expect = 7.6
Identities = 34/112 (30%), Positives = 39/112 (34%), Gaps = 14/112 (12%)
Query: 2 PPPSPDSENGFYPG-LPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAV 60
P P PD+ P LP S A +P SP L S P S T
Sbjct: 316 PVPPPDNAATPLPATLPPSPPLATPLPLAPPSPSAPPSLQTLPSPPATPPSQAPPSMTTP 375
Query: 61 PPPPPPAMN-IPQ------------QQPPPPAAPQQPQSRRSPVSPQLQQQH 99
P PP++ IP Q PP P A Q+ S SP LQ H
Sbjct: 376 PMQAPPSLQTIPPIQVPHSLTSPSLQAPPSPLALSSLQATTSLGSPTLQATH 427
Score = 29.6 bits (65), Expect = 7.6
Identities = 31/115 (26%), Positives = 40/115 (34%), Gaps = 19/115 (16%)
Query: 4 PSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVPPP 63
P P +N P LP+++ P+ P + P S P S PP
Sbjct: 316 PVPPPDNAATP-LPATLPPS--PPLATPLPLAPPSPSAPPS----------LQTLPSPPA 362
Query: 64 PPPAMNIPQQQPPPPAAPQQPQS------RRSPVSPQLQQQHQAAAAAFLQQRNS 112
PP+ P PP AP Q+ S SP LQ A + LQ S
Sbjct: 363 TPPSQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTSPSLQAPPSPLALSSLQATTS 417
>gi|149999378 inverted formin 2 isoform 2 [Homo sapiens]
Length = 1240
Score = 44.3 bits (103), Expect = 3e-04
Identities = 38/151 (25%), Positives = 53/151 (35%), Gaps = 22/151 (14%)
Query: 2 PPPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVP 61
PPP P PGL + PA P P P C L P P P
Sbjct: 458 PPPPP------LPGLGAMAPPA--PPLPPPLPGSCEFLPPPPP---------PLPGLGCP 500
Query: 62 PPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQ-----QQHQAAAAAFLQQRNSYNHH 116
PPPPP + PPPP P P + PV+ ++ Q +A++ N
Sbjct: 501 PPPPPLLPGMGWGPPPPPPPLLPCTCSPPVAGGMEEVIVAQVDHGLGSAWVPSHRRVNPP 560
Query: 117 QPLLKQSPWSNHQSSGWGTGSMSWGAMHGRD 147
+K+ W S+ + W ++ D
Sbjct: 561 TLRMKKLNWQKLPSNVAREHNSMWASLSSPD 591
Score = 33.1 bits (74), Expect = 0.69
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 56 SATAVPPPPPPAMNIPQQQPPPPAAP 81
++T PPPPPP + +PPPP P
Sbjct: 418 ASTPPPPPPPPLLPGSSAEPPPPPPP 443
Score = 31.2 bits (69), Expect = 2.6
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 57 ATAVPPPPPPAM--NIPQQQPPPPAAPQQPQ--SRRSPVSP 93
A+ PPPPPP + + PPPP P P ++ P +P
Sbjct: 418 ASTPPPPPPPPLLPGSSAEPPPPPPPPPLPSVGAKALPTAP 458
Score = 29.6 bits (65), Expect = 7.6
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 7/32 (21%)
Query: 54 PFSATAVPPPPPP-------AMNIPQQQPPPP 78
P S+ PPPPPP A +P PPPP
Sbjct: 431 PGSSAEPPPPPPPPPLPSVGAKALPTAPPPPP 462
>gi|149999380 inverted formin 2 isoform 1 [Homo sapiens]
Length = 1249
Score = 44.3 bits (103), Expect = 3e-04
Identities = 38/151 (25%), Positives = 53/151 (35%), Gaps = 22/151 (14%)
Query: 2 PPPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVP 61
PPP P PGL + PA P P P C L P P P
Sbjct: 458 PPPPP------LPGLGAMAPPA--PPLPPPLPGSCEFLPPPPP---------PLPGLGCP 500
Query: 62 PPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQ-----QQHQAAAAAFLQQRNSYNHH 116
PPPPP + PPPP P P + PV+ ++ Q +A++ N
Sbjct: 501 PPPPPLLPGMGWGPPPPPPPLLPCTCSPPVAGGMEEVIVAQVDHGLGSAWVPSHRRVNPP 560
Query: 117 QPLLKQSPWSNHQSSGWGTGSMSWGAMHGRD 147
+K+ W S+ + W ++ D
Sbjct: 561 TLRMKKLNWQKLPSNVAREHNSMWASLSSPD 591
Score = 33.1 bits (74), Expect = 0.69
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 56 SATAVPPPPPPAMNIPQQQPPPPAAP 81
++T PPPPPP + +PPPP P
Sbjct: 418 ASTPPPPPPPPLLPGSSAEPPPPPPP 443
Score = 31.2 bits (69), Expect = 2.6
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 57 ATAVPPPPPPAM--NIPQQQPPPPAAPQQPQ--SRRSPVSP 93
A+ PPPPPP + + PPPP P P ++ P +P
Sbjct: 418 ASTPPPPPPPPLLPGSSAEPPPPPPPPPLPSVGAKALPTAP 458
Score = 29.6 bits (65), Expect = 7.6
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 7/32 (21%)
Query: 54 PFSATAVPPPPPP-------AMNIPQQQPPPP 78
P S+ PPPPPP A +P PPPP
Sbjct: 431 PGSSAEPPPPPPPPPLPSVGAKALPTAPPPPP 462
>gi|208431824 forkhead box I3 [Homo sapiens]
Length = 420
Score = 44.3 bits (103), Expect = 3e-04
Identities = 35/103 (33%), Positives = 44/103 (42%), Gaps = 23/103 (22%)
Query: 14 PGLPSSMNPAFFPSFSPVS--PHGCTGLSVPTSGGG-------GGGFGGPFSATAV---- 60
PGLP A P P + P+G + P + G G GGP SA A
Sbjct: 15 PGLPPPAATAAAPGAPPAARAPYGLADYAAPPAAAANPYLWLNGPGVGGPPSAAAAAAAA 74
Query: 61 -----PPPPPP-AMNIPQQQPPPPA----APQQPQSRRSPVSP 93
PPPPPP A P QPPP A Q+P ++ +P +P
Sbjct: 75 YLGAPPPPPPPGAAAGPFLQPPPAAGTFGCSQRPFAQPAPAAP 117
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 44.3 bits (103), Expect = 3e-04
Identities = 23/49 (46%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 53 GPFSATAVPPPPPPAMNIPQQQPPPPA-APQQPQSRRSPVSPQLQQQHQ 100
GP + PP PPP + QQQPPP PQQP + P PQ QQ Q
Sbjct: 50 GPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQ 98
Score = 38.5 bits (88), Expect = 0.016
Identities = 29/98 (29%), Positives = 36/98 (36%), Gaps = 18/98 (18%)
Query: 2 PPPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGP------- 54
PPP DS P + PA +P + + PTSG G GP
Sbjct: 100 PPPPQDSSK---PVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPA 156
Query: 55 --FSATAVPPPPPPAMNIPQQ------QPPPPAAPQQP 84
+ PPP PP+ +P PPPPAA P
Sbjct: 157 VTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGP 194
Score = 33.5 bits (75), Expect = 0.53
Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 10/92 (10%)
Query: 3 PPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVPP 62
PP+ + G PG + PA + P VPT+ GG PP
Sbjct: 136 PPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGG----------PP 185
Query: 63 PPPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQ 94
PPP A+ P P P P+ + P P+
Sbjct: 186 PPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPK 217
Score = 33.5 bits (75), Expect = 0.53
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 8/100 (8%)
Query: 2 PPPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVP 61
PPP+P S G+P++ A P P + G G G GG GG
Sbjct: 165 PPPTPPSS-----GVPTTPPQAGGPPPPPAAVPG-PGPGPKQGPGPGGPKGGKMPG-GPK 217
Query: 62 PPPPPAMNIPQQQPPPP-AAPQQPQSRRSPVSPQLQQQHQ 100
P P ++ P P PP +P+ R P QQ HQ
Sbjct: 218 PGGGPGLSTPGGHPKPPHRGGGEPRGGRQHHPPYHQQHHQ 257
Score = 31.2 bits (69), Expect = 2.6
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
Query: 294 GERIERFSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQ 353
GE+ ++FVG LP DI EDE F ++G E F KG F +
Sbjct: 289 GEKTYTQRCRLFVGNLPADITEDEFKRLFAKYG----------EPGEVFINKGKGFGFIK 338
Query: 354 EESSVQALI 362
ES A I
Sbjct: 339 LESRALAEI 347
Score = 29.3 bits (64), Expect = 10.0
Identities = 27/97 (27%), Positives = 30/97 (30%), Gaps = 18/97 (18%)
Query: 2 PPPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVP 61
PPP P P P S PV G G G P S++A P
Sbjct: 87 PPPHPQPHQQQQPPPPPQ------DSSKPVVAQG-------PGPAPGVGSAPPASSSAPP 133
Query: 62 PPPPPAMNIPQQQP-----PPPAAPQQPQSRRSPVSP 93
PP + P P PPPA P P P
Sbjct: 134 ATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPP 170
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 44.3 bits (103), Expect = 3e-04
Identities = 43/167 (25%), Positives = 55/167 (32%), Gaps = 10/167 (5%)
Query: 15 GLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVPPPPPPAMNIPQQQ 74
G SS P+ SP SPH LS G G P + P +IP Q
Sbjct: 646 GSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQ 705
Query: 75 PPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQRNSYNHHQPLLKQSPWSNHQSSGWG 134
PP Q +S P Q + A Q+ + P S H S G
Sbjct: 706 MPPQPPGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPG-- 763
Query: 135 TGSMSWGAMHGRDHRRTGNMGIPGTMNQISPLKKPFSGNVIAPPKFT 181
G M G + +G G M+Q P GN PP ++
Sbjct: 764 -GQMHAGISSFQQSNSSGTYG--PQMSQYGP-----QGNYSRPPAYS 802
Score = 29.6 bits (65), Expect = 7.6
Identities = 36/168 (21%), Positives = 53/168 (31%), Gaps = 24/168 (14%)
Query: 35 GCTGLSVPTSGGGGGGF-----------GGPFSATAVPPPPPPAM-----NIPQQQPP-- 76
G LS +G GGF G + + P P M + P+ P
Sbjct: 328 GAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSA 387
Query: 77 PPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQRNS-YNHHQPLLKQSPWSNHQSSGWGT 135
PP P QPQS+ + Q AA + + Y P + +H + GT
Sbjct: 388 PPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGT 447
Query: 136 GSMSWGAMHGRD-----HRRTGNMGIPGTMNQISPLKKPFSGNVIAPP 178
+ G G +R G+ + P+ G PP
Sbjct: 448 PGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQQSSPYPGGSYGPP 495
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 44.3 bits (103), Expect = 3e-04
Identities = 43/167 (25%), Positives = 55/167 (32%), Gaps = 10/167 (5%)
Query: 15 GLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVPPPPPPAMNIPQQQ 74
G SS P+ SP SPH LS G G P + P +IP Q
Sbjct: 633 GSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQ 692
Query: 75 PPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQRNSYNHHQPLLKQSPWSNHQSSGWG 134
PP Q +S P Q + A Q+ + P S H S G
Sbjct: 693 MPPQPPGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMAQYGPQQTGPSMSPHPSPG-- 750
Query: 135 TGSMSWGAMHGRDHRRTGNMGIPGTMNQISPLKKPFSGNVIAPPKFT 181
G M G + +G G M+Q P GN PP ++
Sbjct: 751 -GQMHAGISSFQQSNSSGTYG--PQMSQYGP-----QGNYSRPPAYS 789
Score = 30.4 bits (67), Expect = 4.5
Identities = 32/119 (26%), Positives = 37/119 (31%), Gaps = 25/119 (21%)
Query: 32 SPHGCTGLSVPTSGGGGGGFGG---PFSATAVPPPPPPAMNIPQQQPPPPAAP------- 81
+PH S P GG G G P P M PQQQ PP
Sbjct: 476 NPHSQPQQSSPYPGGSYGPPGPQRYPIGIQGRTPGAMAGMQYPQQQMPPQYGQQGVSGYC 535
Query: 82 ---QQPQSRRSPVSPQLQQQHQAAAAAFLQQRNSYNHHQPLLKQSPWSNHQSSGWGTGS 137
QQP + P P L Q Q Y Q + P + G+GT S
Sbjct: 536 QQGQQPYYSQQPQPPHLPPQAQ------------YLPSQSQQRYQPQQDMSQEGYGTRS 582
Score = 29.6 bits (65), Expect = 7.6
Identities = 36/168 (21%), Positives = 53/168 (31%), Gaps = 24/168 (14%)
Query: 35 GCTGLSVPTSGGGGGGF-----------GGPFSATAVPPPPPPAM-----NIPQQQPP-- 76
G LS +G GGF G + + P P M + P+ P
Sbjct: 328 GAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSA 387
Query: 77 PPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQRNS-YNHHQPLLKQSPWSNHQSSGWGT 135
PP P QPQS+ + Q AA + + Y P + +H + GT
Sbjct: 388 PPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGT 447
Query: 136 GSMSWGAMHGRD-----HRRTGNMGIPGTMNQISPLKKPFSGNVIAPP 178
+ G G +R G+ + P+ G PP
Sbjct: 448 PGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQQSSPYPGGSYGPP 495
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.137 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,897,188
Number of Sequences: 37866
Number of extensions: 1636466
Number of successful extensions: 26153
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 858
Number of HSP's that attempted gapping in prelim test: 13463
Number of HSP's gapped (non-prelim): 8198
length of query: 559
length of database: 18,247,518
effective HSP length: 107
effective length of query: 452
effective length of database: 14,195,856
effective search space: 6416526912
effective search space used: 6416526912
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.