Guide to the Human Genome
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Name: UBE2C Sequence: fasta or formatted (50aa) NCBI GI: 32967291
Description:

ubiquitin-conjugating enzyme E2C isoform 5

Referenced in:

Cyclins and Related Functions
Ubiquitin and Related Protein Modifications

Other entries for this name:
alt prot [161aa] ubiquitin-conjugating enzyme E2C isoform 2
alt prot [150aa] ubiquitin-conjugating enzyme E2C isoform 3
alt prot [140aa] ubiquitin-conjugating enzyme E2C isoform 4
alt prot [140aa] ubiquitin-conjugating enzyme E2C isoform 4
alt prot [179aa] ubiquitin-conjugating enzyme E2C isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            18.0          9           3
 C cysteine            0.0          0           0
 D aspartate           2.0          1           1
 E glutamate           4.0          2           1
 F phenylalanine       0.0          0           0
 G glycine            10.0          5           2
 H histidine           0.0          0           0
 I isoleucine          2.0          1           1
 K lysine              4.0          2           1
 L leucine             8.0          4           1
 M methionine          6.0          3           1
 N asparagine          4.0          2           1
 P proline            10.0          5           1
 Q glutamine           6.0          3           2
 R arginine            8.0          4           1
 S serine              6.0          3           1
 T threonine           6.0          3           1
 V valine              6.0          3           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin-conjugating enzyme E2C isoform 5 
UBE2C                 0.813   ubiquitin-conjugating enzyme E2C isoform 1 
UBE2C                 0.813   ubiquitin-conjugating enzyme E2C isoform 3 
UBE2C                 0.813   ubiquitin-conjugating enzyme E2C isoform 2 
LOC100293327          0.067   PREDICTED: hypothetical protein 
LOC100291252          0.067   PREDICTED: hypothetical protein XP_002347634 
LOC100287254          0.067   PREDICTED: hypothetical protein XP_002343484 
CACNG8                0.040   voltage-dependent calcium channel gamma-8 subunit [H...
LOC100129101          0.027   PREDICTED: hypothetical protein 
LOC100129101          0.027   PREDICTED: hypothetical protein 
LOC100129101          0.027   PREDICTED: hypothetical protein 
FUT5                  0.027   fucosyltransferase 5 
ABL2                  0.013   arg tyrosine kinase isoform c 
ABL2                  0.013   arg tyrosine kinase isoform b 
ABL2                  0.013   arg tyrosine kinase isoform d 
ABL2                  0.013   arg tyrosine kinase isoform a 
CXorf67               0.013   hypothetical protein LOC340602 
GLCCI1                0.013   glucocorticoid induced transcript 1 
TSC22D2               0.013   TSC22 domain family, member 2 
RERE                  0.013   atrophin-1 like protein isoform a 
RERE                  0.013   atrophin-1 like protein isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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