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Search of human proteins with 32967291
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|32967291 ubiquitin-conjugating enzyme E2C isoform 5 [Homo
sapiens]
(50 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|32967291 ubiquitin-conjugating enzyme E2C isoform 5 [Homo sap... 100 3e-22
gi|5902146 ubiquitin-conjugating enzyme E2C isoform 1 [Homo sapi... 86 6e-18
gi|32967285 ubiquitin-conjugating enzyme E2C isoform 3 [Homo sap... 86 6e-18
gi|32967283 ubiquitin-conjugating enzyme E2C isoform 2 [Homo sap... 86 6e-18
gi|239756433 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo ... 30 0.41
gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo ... 30 0.41
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H... 28 1.6
gi|169162512 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|169161987 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|169161159 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|52485799 fucosyltransferase 5 [Homo sapiens] 27 4.5
gi|153266778 arg tyrosine kinase isoform c [Homo sapiens] 26 5.9
gi|6382062 arg tyrosine kinase isoform b [Homo sapiens] 26 5.9
gi|209862772 arg tyrosine kinase isoform d [Homo sapiens] 26 5.9
gi|153266757 arg tyrosine kinase isoform a [Homo sapiens] 26 5.9
gi|42821110 hypothetical protein LOC340602 [Homo sapiens] 26 5.9
gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens] 26 7.7
gi|7662236 TSC22 domain family, member 2 [Homo sapiens] 26 7.7
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 26 7.7
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 26 7.7
>gi|32967291 ubiquitin-conjugating enzyme E2C isoform 5 [Homo
sapiens]
Length = 50
Score = 100 bits (248), Expect = 3e-22
Identities = 50/50 (100%), Positives = 50/50 (100%)
Query: 1 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMNPTLIVP 50
MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMNPTLIVP
Sbjct: 1 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMNPTLIVP 50
>gi|5902146 ubiquitin-conjugating enzyme E2C isoform 1 [Homo
sapiens]
Length = 179
Score = 85.9 bits (211), Expect = 6e-18
Identities = 43/43 (100%), Positives = 43/43 (100%)
Query: 1 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLM 43
MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLM
Sbjct: 1 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLM 43
>gi|32967285 ubiquitin-conjugating enzyme E2C isoform 3 [Homo
sapiens]
Length = 150
Score = 85.9 bits (211), Expect = 6e-18
Identities = 43/43 (100%), Positives = 43/43 (100%)
Query: 1 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLM 43
MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLM
Sbjct: 1 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLM 43
>gi|32967283 ubiquitin-conjugating enzyme E2C isoform 2 [Homo
sapiens]
Length = 161
Score = 85.9 bits (211), Expect = 6e-18
Identities = 43/43 (100%), Positives = 43/43 (100%)
Query: 1 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLM 43
MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLM
Sbjct: 1 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLM 43
>gi|239756433 PREDICTED: hypothetical protein [Homo sapiens]
Length = 513
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 6 RDPAATS----VAAARKGAEPSGGAARGPVGKRLQQELMTLMNP 45
R PAA + +AAAR+GA P+ GA GP + + T NP
Sbjct: 281 RPPAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFANP 324
>gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo
sapiens]
Length = 513
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 6 RDPAATS----VAAARKGAEPSGGAARGPVGKRLQQELMTLMNP 45
R PAA + +AAAR+GA P+ GA GP + + T NP
Sbjct: 281 RPPAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFANP 324
>gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo
sapiens]
Length = 513
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 6 RDPAATS----VAAARKGAEPSGGAARGPVGKRLQQELMTLMNP 45
R PAA + +AAAR+GA P+ GA GP + + T NP
Sbjct: 281 RPPAAAARRPLLAAARRGALPAPGALIGPAPRARRPLACTFANP 324
>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
sapiens]
Length = 425
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 1 MASQNRDPAATSVAAARKGAEPSGGAARGPVG 32
M + +RDP+ SVAA GA GG A G G
Sbjct: 306 MYTLSRDPSKGSVAAGLAGAGGGGGGAVGAFG 337
>gi|169162512 PREDICTED: hypothetical protein [Homo sapiens]
Length = 119
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 8 PAATSVAAARKGAEPSGGAA 27
PA T+ AA GA P GGAA
Sbjct: 59 PAGTTAPAAAAGAAPRGGAA 78
>gi|169161987 PREDICTED: hypothetical protein [Homo sapiens]
Length = 119
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 8 PAATSVAAARKGAEPSGGAA 27
PA T+ AA GA P GGAA
Sbjct: 59 PAGTTAPAAAAGAAPRGGAA 78
>gi|169161159 PREDICTED: hypothetical protein [Homo sapiens]
Length = 119
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 8 PAATSVAAARKGAEPSGGAA 27
PA T+ AA GA P GGAA
Sbjct: 59 PAGTTAPAAAAGAAPRGGAA 78
>gi|52485799 fucosyltransferase 5 [Homo sapiens]
Length = 374
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 5 NRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMNPTLIV 49
+RD A S EP GA P G R Q + T +PTL++
Sbjct: 37 SRDDATGSPRPGLMAVEPVTGA---PNGSRCQDSMATPAHPTLLI 78
>gi|153266778 arg tyrosine kinase isoform c [Homo sapiens]
Length = 1167
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 1 MASQNRDP---AATSVAAARKGAEPSGGAARGPVG 32
+A +DP VAAA KG E +GGA G G
Sbjct: 854 LAITEKDPPGVGVAGVAAAPKGKEKNGGARLGMAG 888
>gi|6382062 arg tyrosine kinase isoform b [Homo sapiens]
Length = 1182
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 1 MASQNRDP---AATSVAAARKGAEPSGGAARGPVG 32
+A +DP VAAA KG E +GGA G G
Sbjct: 869 LAITEKDPPGVGVAGVAAAPKGKEKNGGARLGMAG 903
>gi|209862772 arg tyrosine kinase isoform d [Homo sapiens]
Length = 1064
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 1 MASQNRDP---AATSVAAARKGAEPSGGAARGPVG 32
+A +DP VAAA KG E +GGA G G
Sbjct: 751 LAITEKDPPGVGVAGVAAAPKGKEKNGGARLGMAG 785
>gi|153266757 arg tyrosine kinase isoform a [Homo sapiens]
Length = 1146
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 1 MASQNRDP---AATSVAAARKGAEPSGGAARGPVG 32
+A +DP VAAA KG E +GGA G G
Sbjct: 833 LAITEKDPPGVGVAGVAAAPKGKEKNGGARLGMAG 867
>gi|42821110 hypothetical protein LOC340602 [Homo sapiens]
Length = 503
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/23 (60%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 5 NRDPAATSVAAARKGAEPSGGAA 27
N+DPAA SV A PSGGAA
Sbjct: 38 NQDPAA-SVTTVSSQASPSGGAA 59
>gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens]
Length = 547
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 3 SQNRDPAATSVAAARKGAEPSGGAARGP 30
S R P A AAA G+ P GAARGP
Sbjct: 79 SPTRPPVAA--AAASLGSLPGPGAARGP 104
>gi|7662236 TSC22 domain family, member 2 [Homo sapiens]
Length = 780
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 9 AATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMNPTLIVP 50
AAT A+PS GP G+ L +TL P + +P
Sbjct: 298 AATGPQPMMAAAQPSQPQGAGPGGQTLPPTNVTLAQPAMSLP 339
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 7 DPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTL 42
DP A S+ A + + A RGPVG + LM +
Sbjct: 149 DPPACSLPVASQPPQHLSEAGRGPVGSKRDHLLMNV 184
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 7 DPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTL 42
DP A S+ A + + A RGPVG + LM +
Sbjct: 149 DPPACSLPVASQPPQHLSEAGRGPVGSKRDHLLMNV 184
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.125 0.344
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,878,659
Number of Sequences: 37866
Number of extensions: 53629
Number of successful extensions: 323
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 309
Number of HSP's gapped (non-prelim): 21
length of query: 50
length of database: 18,247,518
effective HSP length: 24
effective length of query: 26
effective length of database: 17,338,734
effective search space: 450807084
effective search space used: 450807084
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.