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Search of human proteins with 32967283
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|32967283 ubiquitin-conjugating enzyme E2C isoform 2 [Homo
sapiens]
(161 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|32967283 ubiquitin-conjugating enzyme E2C isoform 2 [Homo sap... 325 8e-90
gi|5902146 ubiquitin-conjugating enzyme E2C isoform 1 [Homo sapi... 219 1e-57
gi|32967285 ubiquitin-conjugating enzyme E2C isoform 3 [Homo sap... 159 8e-40
gi|32967289 ubiquitin-conjugating enzyme E2C isoform 4 [Homo sap... 145 2e-35
gi|32967287 ubiquitin-conjugating enzyme E2C isoform 4 [Homo sap... 145 2e-35
gi|32967291 ubiquitin-conjugating enzyme E2C isoform 5 [Homo sap... 86 1e-17
gi|32967276 ubiquitin-conjugating enzyme E2A isoform 2 [Homo sap... 44 5e-05
gi|22749327 ubiquitin-conjugating enzyme E2E 2 [Homo sapiens] 36 0.016
gi|33359694 ubiquitin-conjugating enzyme E2E 3 [Homo sapiens] 36 0.016
gi|5454146 ubiquitin-conjugating enzyme E2E 3 [Homo sapiens] 36 0.016
gi|4507771 ubiquitin-conjugating enzyme E2B [Homo sapiens] 35 0.021
gi|4507779 ubiquitin-conjugating enzyme E2E 1 isoform 1 [Homo sa... 35 0.028
gi|32967280 ubiquitin-conjugating enzyme E2A isoform 1 [Homo sap... 35 0.028
gi|4507773 ubiquitin-conjugating enzyme E2D 1 [Homo sapiens] 32 0.24
gi|8393719 ubiquitin-conjugating enzyme E2D 4 (putative) [Homo s... 31 0.40
gi|33149322 ubiquitin-conjugating enzyme E2D 3 isoform 2 [Homo s... 28 3.4
gi|33149320 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo s... 28 3.4
gi|33149318 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo s... 28 3.4
gi|33149316 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo s... 28 3.4
gi|33149314 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo s... 28 3.4
gi|33149312 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo s... 28 3.4
gi|33149310 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo s... 28 3.4
gi|4507777 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo sa... 28 3.4
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H... 28 3.4
gi|188595687 gamma filamin isoform b [Homo sapiens] 28 4.5
gi|116805322 gamma filamin isoform a [Homo sapiens] 28 4.5
gi|4507775 ubiquitin-conjugating enzyme E2D 2 isoform 1 [Homo sa... 28 4.5
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 27 7.6
gi|37577122 ubiquitin-conjugating enzyme E2, J1 [Homo sapiens] 27 7.6
gi|25014103 interleukin 28 receptor, alpha isoform 1 [Homo sapiens] 27 9.9
>gi|32967283 ubiquitin-conjugating enzyme E2C isoform 2 [Homo
sapiens]
Length = 161
Score = 325 bits (834), Expect = 8e-90
Identities = 161/161 (100%), Positives = 161/161 (100%)
Query: 1 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLF 60
MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLF
Sbjct: 1 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLF 60
Query: 61 KWVGTIHGAAGTAVGSIRTSSTVCLLSGPRETQDSSKPLVWGLGWDMRLLLELTLQLFLQ 120
KWVGTIHGAAGTAVGSIRTSSTVCLLSGPRETQDSSKPLVWGLGWDMRLLLELTLQLFLQ
Sbjct: 61 KWVGTIHGAAGTAVGSIRTSSTVCLLSGPRETQDSSKPLVWGLGWDMRLLLELTLQLFLQ 120
Query: 121 MPEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQEP 161
MPEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQEP
Sbjct: 121 MPEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQEP 161
>gi|5902146 ubiquitin-conjugating enzyme E2C isoform 1 [Homo
sapiens]
Length = 179
Score = 219 bits (557), Expect = 1e-57
Identities = 123/182 (67%), Positives = 132/182 (72%), Gaps = 24/182 (13%)
Query: 1 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLF 60
MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLF
Sbjct: 1 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLF 60
Query: 61 KWVGTIHGAAGTAVGSIRTSSTVCLLSGPRETQDSSKPLV-------------------- 100
KWVGTIHGAAGT +R ++ SG + K L
Sbjct: 61 KWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKE 120
Query: 101 -WGLGWDMRLLLELTLQLFLQMPEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQ 159
W +D+R +L L++Q L EPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQ
Sbjct: 121 KWSALYDVRTIL-LSIQSLL--GEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQ 177
Query: 160 EP 161
EP
Sbjct: 178 EP 179
>gi|32967285 ubiquitin-conjugating enzyme E2C isoform 3 [Homo
sapiens]
Length = 150
Score = 159 bits (403), Expect = 8e-40
Identities = 97/162 (59%), Positives = 110/162 (67%), Gaps = 13/162 (8%)
Query: 1 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLF 60
MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLM+ D E + +
Sbjct: 1 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMVYEDLRYKLSLEFPSGY 60
Query: 61 KW-VGTIHGAAGTAVGSIRTSSTVCLLSGPRETQDSSKPLVWGLGWDMRLLLELTLQLFL 119
+ T+ ++ T +CL D K W +D+R +L L++Q L
Sbjct: 61 PYNAPTVKFLTPCYHPNVDTQGNICL--------DILKE-KWSALYDVRTIL-LSIQSLL 110
Query: 120 QMPEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQEP 161
EPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQEP
Sbjct: 111 --GEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQEP 150
>gi|32967289 ubiquitin-conjugating enzyme E2C isoform 4 [Homo
sapiens]
Length = 140
Score = 145 bits (365), Expect = 2e-35
Identities = 84/143 (58%), Positives = 93/143 (65%), Gaps = 24/143 (16%)
Query: 40 MTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTAVGSIRTSSTVCLLSGPRETQDSSKPL 99
MTLMMSGDKGISAFPESDNLFKWVGTIHGAAGT +R ++ SG + K L
Sbjct: 1 MTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFL 60
Query: 100 V---------------------WGLGWDMRLLLELTLQLFLQMPEPNIDSPLNTHAAELW 138
W +D+R +L L++Q L EPNIDSPLNTHAAELW
Sbjct: 61 TPCYHPNVDTQGNICLDILKEKWSALYDVRTIL-LSIQSLLG--EPNIDSPLNTHAAELW 117
Query: 139 KNPTAFKKYLQETYSKQVTSQEP 161
KNPTAFKKYLQETYSKQVTSQEP
Sbjct: 118 KNPTAFKKYLQETYSKQVTSQEP 140
>gi|32967287 ubiquitin-conjugating enzyme E2C isoform 4 [Homo
sapiens]
Length = 140
Score = 145 bits (365), Expect = 2e-35
Identities = 84/143 (58%), Positives = 93/143 (65%), Gaps = 24/143 (16%)
Query: 40 MTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTAVGSIRTSSTVCLLSGPRETQDSSKPL 99
MTLMMSGDKGISAFPESDNLFKWVGTIHGAAGT +R ++ SG + K L
Sbjct: 1 MTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFL 60
Query: 100 V---------------------WGLGWDMRLLLELTLQLFLQMPEPNIDSPLNTHAAELW 138
W +D+R +L L++Q L EPNIDSPLNTHAAELW
Sbjct: 61 TPCYHPNVDTQGNICLDILKEKWSALYDVRTIL-LSIQSLLG--EPNIDSPLNTHAAELW 117
Query: 139 KNPTAFKKYLQETYSKQVTSQEP 161
KNPTAFKKYLQETYSKQVTSQEP
Sbjct: 118 KNPTAFKKYLQETYSKQVTSQEP 140
>gi|32967291 ubiquitin-conjugating enzyme E2C isoform 5 [Homo
sapiens]
Length = 50
Score = 85.9 bits (211), Expect = 1e-17
Identities = 43/43 (100%), Positives = 43/43 (100%)
Query: 1 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLM 43
MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLM
Sbjct: 1 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLM 43
>gi|32967276 ubiquitin-conjugating enzyme E2A isoform 2 [Homo
sapiens]
Length = 122
Score = 44.3 bits (103), Expect = 5e-05
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 12/110 (10%)
Query: 30 PVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTAVGSIRTSSTVCLLSGP 89
P +RL ++ L G+S P +N+ W I G GT + ++CL
Sbjct: 4 PARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDVYADGSICL---- 59
Query: 90 RETQDSSKPLVWGLGWDMRLLLELTLQLFLQMPEPNIDSPLNTHAAELWK 139
W +D+ +L ++Q L P PN SP N+ AA+L++
Sbjct: 60 -----DILQNRWSPTYDVSSIL-TSIQSLLDEPNPN--SPANSQAAQLYQ 101
>gi|22749327 ubiquitin-conjugating enzyme E2E 2 [Homo sapiens]
Length = 201
Score = 35.8 bits (81), Expect = 0.016
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 3 SQNRDPAATSVAAARKGAEPSGGAAR--GPVGKRLQQELMTLMMSGDKGISAFPESDNLF 60
S ++P V +K + S A KR+Q+EL + + SA P+ DN++
Sbjct: 26 SVQQEPEREQVQPKKKEGKISSKTAAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIY 85
Query: 61 KWVGTIHGAAGT 72
+W TI G G+
Sbjct: 86 EWRSTILGPPGS 97
>gi|33359694 ubiquitin-conjugating enzyme E2E 3 [Homo sapiens]
Length = 207
Score = 35.8 bits (81), Expect = 0.016
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 4 QNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWV 63
+ R P+AT K + + A KR+Q+EL + + SA P+ DN+++W
Sbjct: 36 EERKPSATQQKKNTKLSSKTT-AKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWR 94
Query: 64 GTIHGAAGT 72
TI G G+
Sbjct: 95 STILGPPGS 103
>gi|5454146 ubiquitin-conjugating enzyme E2E 3 [Homo sapiens]
Length = 207
Score = 35.8 bits (81), Expect = 0.016
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 4 QNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWV 63
+ R P+AT K + + A KR+Q+EL + + SA P+ DN+++W
Sbjct: 36 EERKPSATQQKKNTKLSSKTT-AKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWR 94
Query: 64 GTIHGAAGT 72
TI G G+
Sbjct: 95 STILGPPGS 103
>gi|4507771 ubiquitin-conjugating enzyme E2B [Homo sapiens]
Length = 152
Score = 35.4 bits (80), Expect = 0.021
Identities = 36/131 (27%), Positives = 54/131 (41%), Gaps = 24/131 (18%)
Query: 30 PVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTAV--GSIR--------- 78
P +RL ++ L G+S P +N+ +W I G GT G+ +
Sbjct: 4 PARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEY 63
Query: 79 --TSSTVCLLS---GPRETQDSSKPL-----VWGLGWDMRLLLELTLQLFLQMPEPNIDS 128
TV LS P D S L W +D+ +L ++Q L P PN S
Sbjct: 64 PNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSIL-TSIQSLLDEPNPN--S 120
Query: 129 PLNTHAAELWK 139
P N+ AA+L++
Sbjct: 121 PANSQAAQLYQ 131
>gi|4507779 ubiquitin-conjugating enzyme E2E 1 isoform 1 [Homo
sapiens]
Length = 193
Score = 35.0 bits (79), Expect = 0.028
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGT 72
KR+Q+EL + + SA P+ DN+++W TI G G+
Sbjct: 50 KRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGS 89
>gi|32967280 ubiquitin-conjugating enzyme E2A isoform 1 [Homo
sapiens]
Length = 152
Score = 35.0 bits (79), Expect = 0.028
Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 24/131 (18%)
Query: 30 PVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTAV--GSIR--------- 78
P +RL ++ L G+S P +N+ W I G GT G+ +
Sbjct: 4 PARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEY 63
Query: 79 -----TSSTVCLLSGPRETQDSSKPL-----VWGLGWDMRLLLELTLQLFLQMPEPNIDS 128
T V + P D S L W +D+ +L ++Q L P PN S
Sbjct: 64 PNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSIL-TSIQSLLDEPNPN--S 120
Query: 129 PLNTHAAELWK 139
P N+ AA+L++
Sbjct: 121 PANSQAAQLYQ 131
>gi|4507773 ubiquitin-conjugating enzyme E2D 1 [Homo sapiens]
Length = 147
Score = 32.0 bits (71), Expect = 0.24
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTA 73
KR+Q+EL L SA P D+LF W TI G +A
Sbjct: 4 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSA 44
>gi|8393719 ubiquitin-conjugating enzyme E2D 4 (putative) [Homo
sapiens]
Length = 147
Score = 31.2 bits (69), Expect = 0.40
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHG 68
KR+Q+EL L SA P D+LF W TI G
Sbjct: 4 KRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMG 39
>gi|33149322 ubiquitin-conjugating enzyme E2D 3 isoform 2 [Homo
sapiens]
Length = 148
Score = 28.1 bits (61), Expect = 3.4
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHG 68
KR+ +EL L SA P D++F W TI G
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMG 39
>gi|33149320 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo
sapiens]
Length = 147
Score = 28.1 bits (61), Expect = 3.4
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHG 68
KR+ +EL L SA P D++F W TI G
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMG 39
>gi|33149318 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo
sapiens]
Length = 147
Score = 28.1 bits (61), Expect = 3.4
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHG 68
KR+ +EL L SA P D++F W TI G
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMG 39
>gi|33149316 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo
sapiens]
Length = 147
Score = 28.1 bits (61), Expect = 3.4
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHG 68
KR+ +EL L SA P D++F W TI G
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMG 39
>gi|33149314 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo
sapiens]
Length = 147
Score = 28.1 bits (61), Expect = 3.4
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHG 68
KR+ +EL L SA P D++F W TI G
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMG 39
>gi|33149312 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo
sapiens]
Length = 147
Score = 28.1 bits (61), Expect = 3.4
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHG 68
KR+ +EL L SA P D++F W TI G
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMG 39
>gi|33149310 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo
sapiens]
Length = 147
Score = 28.1 bits (61), Expect = 3.4
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHG 68
KR+ +EL L SA P D++F W TI G
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMG 39
>gi|4507777 ubiquitin-conjugating enzyme E2D 3 isoform 1 [Homo
sapiens]
Length = 147
Score = 28.1 bits (61), Expect = 3.4
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHG 68
KR+ +EL L SA P D++F W TI G
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMG 39
>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
sapiens]
Length = 425
Score = 28.1 bits (61), Expect = 3.4
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 1 MASQNRDPAATSVAAARKGAEPSGGAARGPVG 32
M + +RDP+ SVAA GA GG A G G
Sbjct: 306 MYTLSRDPSKGSVAAGLAGAGGGGGGAVGAFG 337
>gi|188595687 gamma filamin isoform b [Homo sapiens]
Length = 2692
Score = 27.7 bits (60), Expect = 4.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 79 TSSTVCLLSGPRETQDSSKPLVWGLG 104
T+S +L GP E D+SK VWG G
Sbjct: 1992 TNSPFKILVGPSEIGDASKVRVWGKG 2017
>gi|116805322 gamma filamin isoform a [Homo sapiens]
Length = 2725
Score = 27.7 bits (60), Expect = 4.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 79 TSSTVCLLSGPRETQDSSKPLVWGLG 104
T+S +L GP E D+SK VWG G
Sbjct: 2025 TNSPFKILVGPSEIGDASKVRVWGKG 2050
>gi|4507775 ubiquitin-conjugating enzyme E2D 2 isoform 1 [Homo
sapiens]
Length = 147
Score = 27.7 bits (60), Expect = 4.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHG 68
KR+ +EL L SA P D++F W TI G
Sbjct: 4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMG 39
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 26.9 bits (58), Expect = 7.6
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 7 DPAATSVAAARKGAEPSGGAARG----PVGKRLQQELMTLMMSGDK 48
+ AAT AAAR+G +GG P LQQ L L +S D+
Sbjct: 338 ESAATGNAAAREGGLSAGGEPPAPPTPPATSALQQGLRGLHLSSDR 383
>gi|37577122 ubiquitin-conjugating enzyme E2, J1 [Homo sapiens]
Length = 318
Score = 26.9 bits (58), Expect = 7.6
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 28 RGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHG 68
+ P KRL +E L D A P DNLF+W T+ G
Sbjct: 8 KSPAVKRLMKEAAELKDPTDH-YHAQPLEDNLFEWHFTVRG 47
>gi|25014103 interleukin 28 receptor, alpha isoform 1 [Homo sapiens]
Length = 520
Score = 26.6 bits (57), Expect = 9.9
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 15 AARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWV--GTIHGAAGT 72
A G G +GP G Q+ L S D G DNL W GT+
Sbjct: 401 AGSSGYLAEKGPGQGPGGDGHQESLPPPEFSKDSGFLEELPEDNLSSWATWGTLPPEPNL 460
Query: 73 AVG----SIRTSSTVCLLSGPRETQDS 95
G S++T T C S P E +++
Sbjct: 461 VPGGPPVSLQT-LTFCWESSPEEEEEA 486
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.128 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,325,340
Number of Sequences: 37866
Number of extensions: 258941
Number of successful extensions: 717
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 680
Number of HSP's gapped (non-prelim): 41
length of query: 161
length of database: 18,247,518
effective HSP length: 94
effective length of query: 67
effective length of database: 14,688,114
effective search space: 984103638
effective search space used: 984103638
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.