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Search of human proteins with 32880199
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|32880199 makorin ring finger protein 2 [Homo sapiens]
(416 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|32880199 makorin ring finger protein 2 [Homo sapiens] 877 0.0
gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens] 385 e-107
gi|5032243 makorin ring finger protein 3 [Homo sapiens] 291 1e-78
gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens] 263 2e-70
gi|118766347 zinc finger CCCH-type domain containing 6 [Homo sap... 60 5e-09
gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens] 56 5e-08
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 55 1e-07
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 55 2e-07
gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa... 50 3e-06
gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens] 47 4e-05
gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens] 46 5e-05
gi|125987603 cleavage and polyadenylation specific factor 4, 30k... 45 9e-05
gi|193788659 cleavage and polyadenylation specific factor 4-like... 44 2e-04
gi|21630277 tripartite motif-containing 11 [Homo sapiens] 42 0.001
gi|71043932 zinc finger, SWIM domain containing 2 [Homo sapiens] 39 0.007
gi|5902054 ring finger protein 5 [Homo sapiens] 39 0.011
gi|5454014 tripartite motif-containing 38 [Homo sapiens] 38 0.015
gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo sapi... 38 0.019
gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens] 38 0.019
gi|114842410 zinc finger CCCH-type containing 11A [Homo sapiens] 38 0.019
gi|117676384 splicing factor, arginine/serine-rich 2, interactin... 37 0.025
gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo ... 37 0.033
gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo ... 37 0.033
gi|15812180 butyrate response factor 1 [Homo sapiens] 37 0.043
gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens] 37 0.043
gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens] 37 0.043
gi|35493801 ring finger protein 19 [Homo sapiens] 37 0.043
gi|35493782 ring finger protein 19 [Homo sapiens] 37 0.043
gi|22749117 hypothetical protein LOC152405 [Homo sapiens] 37 0.043
gi|39777586 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [Homo ... 36 0.056
>gi|32880199 makorin ring finger protein 2 [Homo sapiens]
Length = 416
Score = 877 bits (2267), Expect = 0.0
Identities = 416/416 (100%), Positives = 416/416 (100%)
Query: 1 MSTKQITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDHTRPSA 60
MSTKQITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDHTRPSA
Sbjct: 1 MSTKQITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDHTRPSA 60
Query: 61 AAGGAVGTMAHSVPSPAFHSPHPPSEVTASIVKTNSHEPGKREKRTLVLRDRNLSGMAER 120
AAGGAVGTMAHSVPSPAFHSPHPPSEVTASIVKTNSHEPGKREKRTLVLRDRNLSGMAER
Sbjct: 61 AAGGAVGTMAHSVPSPAFHSPHPPSEVTASIVKTNSHEPGKREKRTLVLRDRNLSGMAER 120
Query: 121 KTQPSMVSNPGSCSDPQPSPEMKPHSYLDAIRSGLDDVEASSSYSNEQQLCPYAAAGECR 180
KTQPSMVSNPGSCSDPQPSPEMKPHSYLDAIRSGLDDVEASSSYSNEQQLCPYAAAGECR
Sbjct: 121 KTQPSMVSNPGSCSDPQPSPEMKPHSYLDAIRSGLDDVEASSSYSNEQQLCPYAAAGECR 180
Query: 181 FGDACVYLHGEVCEICRLQVLHPFDPEQRKAHEKICMLTFEHEMEKAFAFQASQDKVCSI 240
FGDACVYLHGEVCEICRLQVLHPFDPEQRKAHEKICMLTFEHEMEKAFAFQASQDKVCSI
Sbjct: 181 FGDACVYLHGEVCEICRLQVLHPFDPEQRKAHEKICMLTFEHEMEKAFAFQASQDKVCSI 240
Query: 241 CMEVILEKASASERRFGILSNCNHTYCLSCIRQWRCAKQFENPIIKSCPECRVISEFVIP 300
CMEVILEKASASERRFGILSNCNHTYCLSCIRQWRCAKQFENPIIKSCPECRVISEFVIP
Sbjct: 241 CMEVILEKASASERRFGILSNCNHTYCLSCIRQWRCAKQFENPIIKSCPECRVISEFVIP 300
Query: 301 SVYWVEDQNKKNELIEAFKQGMGKKACKYFEQGKGTCPFGSKCLYRHAYPDGRLAEPEKP 360
SVYWVEDQNKKNELIEAFKQGMGKKACKYFEQGKGTCPFGSKCLYRHAYPDGRLAEPEKP
Sbjct: 301 SVYWVEDQNKKNELIEAFKQGMGKKACKYFEQGKGTCPFGSKCLYRHAYPDGRLAEPEKP 360
Query: 361 RKQLSSQGTVRFFNSVRLWDFIENRESRHVPNNEDVDMTELGDLFMHLSGVESSEP 416
RKQLSSQGTVRFFNSVRLWDFIENRESRHVPNNEDVDMTELGDLFMHLSGVESSEP
Sbjct: 361 RKQLSSQGTVRFFNSVRLWDFIENRESRHVPNNEDVDMTELGDLFMHLSGVESSEP 416
>gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens]
Length = 482
Score = 385 bits (989), Expect = e-107
Identities = 188/408 (46%), Positives = 254/408 (62%), Gaps = 14/408 (3%)
Query: 3 TKQITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDHTRPSAAA 62
TKQ+TCRYFMHGVC+EG C +SHDL++S S +CKY+Q+GYC YG RCRY+H++P
Sbjct: 56 TKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQE 115
Query: 63 GGAVGTMAHSVPSPAFHSPHPPSEVTASIVKTNSHEPGKREKRTLVLRDRNLSGMAERKT 122
T + + S + +V+ N+ E R + +G +
Sbjct: 116 EA---TATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVG----AGSEDWVN 168
Query: 123 QPSMVSNPGSCSDPQPSPEMKPHSYLDAIRSGLDDVEASSSYSNEQQLCPYAAAGECRFG 182
V C PS P L + + + ++ ++QLCPYAA GECR+G
Sbjct: 169 AIEFVPGQPYCGRTAPSCTEAP---LQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYG 225
Query: 183 DACVYLHGEVCEICRLQVLHPFDPEQRKAHEKICMLTFEHEMEKAFAFQASQDKVCSICM 242
+ CVYLHG+ C++C LQVLHP D QR H K C+ E +ME +FA Q S+D VC ICM
Sbjct: 226 ENCVYLHGDSCDMCGLQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICM 285
Query: 243 EVILEKASASERRFGILSNCNHTYCLSCIRQWRCAKQFENPIIKSCPECRVISEFVIPSV 302
EV+ EKA+ SERRFGILSNCNHTYCL CIR+WR AKQFE+ IIKSCPECR+ S FVIPS
Sbjct: 286 EVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNFVIPSE 345
Query: 303 YWVEDQNKKNELIEAFKQGMGKKACKYFEQGKGTCPFGSKCLYRHAYPDGRLAEPEKPRK 362
YWVE++ +K +LI +K+ M KAC+YF++G+G+CPFG C Y+HAYPDGR EP++ +
Sbjct: 346 YWVEEKEEKQKLILKYKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEPQRQKV 405
Query: 363 QLSSQGTVRFFNSVRLWDFIENRESRHVPNN--EDVDMTELGDLFMHL 408
SS+ + N W+ IE RE+ + +N E+V ELG++ + L
Sbjct: 406 GTSSRYRAQRRN--HFWELIEERENSNPFDNDEEEVVTFELGEMLLML 451
>gi|5032243 makorin ring finger protein 3 [Homo sapiens]
Length = 507
Score = 291 bits (744), Expect = 1e-78
Identities = 148/359 (41%), Positives = 208/359 (57%), Gaps = 22/359 (6%)
Query: 3 TKQITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDHTRPSAAA 62
TKQI CRY++HG C+EG C +SHDL+ K +T + G + P A+A
Sbjct: 96 TKQIICRYYIHGQCKEGENCRYSHDLSGRKMAT-----EGGV-----------SPPGASA 139
Query: 63 GGAVGTMAHSVPSPAFHSPHPPSEVTASIVKTNSHEPGKREKRTLVLRDRNLSGMAERKT 122
GG T AH P + PP+ + S+ S + DR +G A ++
Sbjct: 140 GGGPSTAAHIEPPTQEVAEAPPAASSLSLPVIGSAAERGFFEAERDNADRGAAGGAGVES 199
Query: 123 QPSMVS-NPGSCSDPQPSPEMKPHSYLDAIRSGLDDVEASSSYSNEQQLCPYAAAGECRF 181
+ PG QP S +A + + + + C YA+ G C
Sbjct: 200 WADAIEFVPG-----QPYRGRWVASAPEAPLQSSETERKQMAVGSGLRFCYYASRGVCFR 254
Query: 182 GDACVYLHGEVCEICRLQVLHPFDPEQRKAHEKICMLTFEHEMEKAFAFQASQDKVCSIC 241
G++C+YLHG++C++C LQ LHP D QR+ H + C+ E +ME +FA Q DKVC IC
Sbjct: 255 GESCMYLHGDICDMCGLQTLHPMDAAQREEHMRACIEAHEKDMELSFAVQRGMDKVCGIC 314
Query: 242 MEVILEKASASERRFGILSNCNHTYCLSCIRQWRCAKQFENPIIKSCPECRVISEFVIPS 301
MEV+ EKA+ ++RRFGILSNCNH++C+ CIR+WR A+QFEN I+KSCP+CRV SE VIPS
Sbjct: 315 MEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVKSCPQCRVTSELVIPS 374
Query: 302 VYWVEDQNKKNELIEAFKQGMGKKACKYFEQGKGTCPFGSKCLYRHAYPDGRLAEPEKP 360
+WVE++ +K +LI+ +K+ M KAC+YF +G+G CPFG C Y+H YP+G EP P
Sbjct: 375 EFWVEEEEEKQKLIQQYKEAMSNKACRYFAEGRGNCPFGDTCFYKHEYPEGWGDEPPGP 433
>gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens]
Length = 329
Score = 263 bits (673), Expect = 2e-70
Identities = 130/284 (45%), Positives = 170/284 (59%), Gaps = 10/284 (3%)
Query: 3 TKQITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDHTRPSAAA 62
TKQ+TCRYFMHGVC+EG C +SHDL++S S +CKY+Q+GYC YG RCRY+H++P
Sbjct: 56 TKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQE 115
Query: 63 GGAVGTMAHSVPSPAFHSPHPPSEVTASIVKTNSHEPGKREKRTLVLRDRNLSGMAERKT 122
T + + S + +V+ N+ E R + +G +
Sbjct: 116 EA---TATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVG----AGSEDWVN 168
Query: 123 QPSMVSNPGSCSDPQPSPEMKPHSYLDAIRSGLDDVEASSSYSNEQQLCPYAAAGECRFG 182
V C PS P L + + + ++ ++QLCPYAA GECR+G
Sbjct: 169 AIEFVPGQPYCGRTAPSCTEAP---LQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYG 225
Query: 183 DACVYLHGEVCEICRLQVLHPFDPEQRKAHEKICMLTFEHEMEKAFAFQASQDKVCSICM 242
+ CVYLHG+ C++C LQVLHP D QR H K C+ E +ME +FA Q S+D VC ICM
Sbjct: 226 ENCVYLHGDSCDMCGLQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICM 285
Query: 243 EVILEKASASERRFGILSNCNHTYCLSCIRQWRCAKQFENPIIK 286
EV+ EKA+ SERRFGILSNCNHTYCL CIR+WR AKQFE+ IIK
Sbjct: 286 EVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIK 329
Score = 32.3 bits (72), Expect = 0.81
Identities = 58/260 (22%), Positives = 88/260 (33%), Gaps = 57/260 (21%)
Query: 117 MAERKTQPSMVSNPGS--------CSDPQPSPEMKPHSYLDAIRSGLDDVEASSSYSNEQ 168
MAE T + + G+ + P P P + S G + S +Q
Sbjct: 1 MAEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSL--GAGGGGGGSDGSGGGWTKQ 58
Query: 169 QLCPYAAAGECRFGDACVYLH-------GEVCEI-----------CRLQVLHPFDPEQRK 210
C Y G C+ GD C Y H VC+ CR + P E+
Sbjct: 59 VTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEEAT 118
Query: 211 AHEKICMLTFEHEMEKAFAFQASQDKVCSICMEVILEKASASERRFGILSNCNHTYCLSC 270
A E LT + + A+ + SI ++ +E R N N +
Sbjct: 119 ATE----LTTKSSL-------AASSSLSSIVGPLVEMNTGEAESR-----NSNFATVGAG 162
Query: 271 IRQWRCAKQFE--NPII-KSCPECRVISEFVIPSVYWVEDQNKKNELIEAFKQGMGKKAC 327
W A +F P ++ P C +E + E+ K+ +E KQ C
Sbjct: 163 SEDWVNAIEFVPGQPYCGRTAPSC---TEAPLQGSVTKEESEKEQTAVETKKQ-----LC 214
Query: 328 KYFEQGKGTCPFGSKCLYRH 347
Y G+ C +G C+Y H
Sbjct: 215 PYAAVGE--CRYGENCVYLH 232
Score = 31.6 bits (70), Expect = 1.4
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 327 CKYFEQGKGTCPFGSKCLYRHAYPDGRLAEPEKPRKQLSSQGTVRFFNSV 376
CKYF+ +G C +G +C Y H+ P L + E +L+++ ++ +S+
Sbjct: 90 CKYFQ--RGYCIYGDRCRYEHSKP---LKQEEATATELTTKSSLAASSSL 134
>gi|118766347 zinc finger CCCH-type domain containing 6 [Homo
sapiens]
Length = 1189
Score = 59.7 bits (143), Expect = 5e-09
Identities = 26/52 (50%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 4 KQITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDH 55
KQI C+YF+ G C +G QC F HD K ICK+Y +GYC G C Y H
Sbjct: 275 KQI-CKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMH 325
Score = 39.7 bits (91), Expect = 0.005
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 8 CRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKG-YCAYGTRCRYDH 55
C++++ G C +G C++ H N P CK+Y G C G C++ H
Sbjct: 307 CKFYLQGYCTKGENCIYMH---NEFP---CKFYHSGAKCYQGDNCKFSH 349
Score = 32.7 bits (73), Expect = 0.62
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 32 KPSTICKYYQKGYCAYGTRCRYDH 55
K ICKY+ +G C G +C++DH
Sbjct: 273 KGKQICKYFLEGRCIKGDQCKFDH 296
>gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens]
Length = 291
Score = 56.2 bits (134), Expect = 5e-08
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 4 KQITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDH 55
KQI C+YF+ C +G QC F HD K +CK+Y +GYC G C Y H
Sbjct: 194 KQI-CKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLH 244
Score = 39.3 bits (90), Expect = 0.007
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 4 KQITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKG-YCAYGTRCRYDH 55
K+ C++++ G C G CL+ H N P CK+Y G C G C++ H
Sbjct: 222 KKEMCKFYVQGYCTRGENCLYLH---NEYP---CKFYHTGTKCYQGEYCKFSH 268
Score = 32.3 bits (72), Expect = 0.81
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 20 SQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDH 55
SQ + K ICKY+ + C G +C++DH
Sbjct: 180 SQAFINQHTVERKGKQICKYFLERKCIKGDQCKFDH 215
Score = 28.9 bits (63), Expect = 9.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 167 EQQLCPYAAAGECRFGDACVYLHGE 191
++++C + G C G+ C+YLH E
Sbjct: 222 KKEMCKFYVQGYCTRGENCLYLHNE 246
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 55.1 bits (131), Expect = 1e-07
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 5 QITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDH 55
++ C+YF+ G C G C FSHD+ K +CK+Y G+CA C Y H
Sbjct: 393 KVICKYFVEGRCTWGDHCNFSHDIELPKKRELCKFYITGFCARAENCPYMH 443
Score = 36.6 bits (83), Expect = 0.043
Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 15/129 (11%)
Query: 26 HDLANSKPSTICKYYQKGYCAYGTRCRYDH-----TRPSAAAGGAVGTMAHSVPSPAFHS 80
H ++ K ICKY+ +G C +G C + H + G A + P H
Sbjct: 385 HQQSDKKGKVICKYFVEGRCTWGDHCNFSHDIELPKKRELCKFYITGFCARAENCPYMHG 444
Query: 81 PHPPS--EVTASIVKTN----SHEPGKREKRTL---VLRDRNLSGMAERKTQPSMVSNPG 131
P T + + + SH+P E R L +L D +G AE + + + G
Sbjct: 445 DFPCKLYHTTGNCINGDDCMFSHDPLTEETRELLDKMLADDAEAG-AEDEKEVEELKKQG 503
Query: 132 SCSDPQPSP 140
P+P P
Sbjct: 504 INPLPKPPP 512
Score = 29.6 bits (65), Expect = 5.3
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 4 KQITCRYFMHGVCREGSQCLFSHDLANSKPSTICK-YYQKGYCAYGTRCRYDH 55
K+ C++++ G C C + H CK Y+ G C G C + H
Sbjct: 421 KRELCKFYITGFCARAENCPYMHG------DFPCKLYHTTGNCINGDDCMFSH 467
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 54.7 bits (130), Expect = 2e-07
Identities = 51/187 (27%), Positives = 71/187 (37%), Gaps = 23/187 (12%)
Query: 4 KQITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDHT------- 56
K C YF+ G+C S C +SH + K + +C + KGYC G +C+ HT
Sbjct: 725 KMPVCSYFLKGIC-SNSNCPYSHVYVSRK-AEVCSDFLKGYCPLGAKCKKKHTLLCPDFA 782
Query: 57 RPSAAAGGAVGTMAHSVPS----PAFHSPHP-PSEVTASIVKTNSHEPGKREKRTLVLRD 111
R A GA + H A SP P PS+ TA + SH P K R
Sbjct: 783 RRGACPRGAQCQLLHRTQKRHSRRAATSPAPGPSDATARSRVSASHGPRKPSASQRPTRQ 842
Query: 112 RNLSGMAERKTQPSMVSNPGSCSDP-------QPSPEMKPHSYLDAIRSGLDDVEASSSY 164
S + PG + P S P + LD L + +++
Sbjct: 843 TPSSAALTAAAVAAPPHCPGGSASPSSSKASSSSSSSSSPPASLDHEAPSLQEAALAAAC 902
Query: 165 SNEQQLC 171
SN +LC
Sbjct: 903 SN--RLC 907
>gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa
isoform 1 [Homo sapiens]
Length = 269
Score = 50.4 bits (119), Expect = 3e-06
Identities = 41/177 (23%), Positives = 65/177 (36%), Gaps = 41/177 (23%)
Query: 4 KQITCRYFMHGVCREGSQCLFSHDLANSKPSTI--------------------------- 36
K + C++++ G+C++G QC F H+ +K
Sbjct: 64 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKD 123
Query: 37 CKYYQKGYCAYGTRCRYDHTRPSAAAGGAVGTMAHSVPSPAFHSPH-----------PPS 85
C +Y +G+C +G CR+ HTR VG PS F P P
Sbjct: 124 CPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEG-PSCKFMHPRFELPMGTTEQPPLP 182
Query: 86 EVTASIVKTNSHEPGKREKRTLVLRDRNLSGMAERKTQ--PSMVSNPGSCSDPQPSP 140
+ T K +++ P +R + L +N S +R Q M S S + P P
Sbjct: 183 QQTQPPAKQSNNPPLQRSSSLIQLTSQNSSPNQQRTPQVIGVMQSQNSSAGNRGPRP 239
Score = 40.8 bits (94), Expect = 0.002
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 8 CRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDH 55
C +F+ C +G C F H + + + +CK++ +G C G +C + H
Sbjct: 41 CEFFLKAACGKGGMCPFRH--ISGEKTVVCKHWLRGLCKKGDQCEFLH 86
>gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens]
Length = 494
Score = 46.6 bits (109), Expect = 4e-05
Identities = 48/189 (25%), Positives = 69/189 (36%), Gaps = 40/189 (21%)
Query: 8 CRYFMH-GVCREGSQCLFSHDLANSKPST--------ICK-YYQKGYCAYGTRCRYDHT- 56
CR F G C+ G +C F+H + T +C+ ++ G+C YG RC + H
Sbjct: 159 CRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNA 218
Query: 57 --RPSAAAGGAVGTMAHSVPSPAFHSPHPPSEVTASIVKTNSHEPGKREKRTLVLRDRNL 114
R A +GGA G + A H P RE R + +
Sbjct: 219 DERRPAPSGGASGDLRAFGTRDALHLGFP------------------REPRPKLHHSLSF 260
Query: 115 SGMAERKTQPS-------MVSNPGSCSDPQPSPEMKPHSYLDAIRSGLDDVEASSSYSNE 167
SG QP ++ +P S + P PS S + S A+S+ S
Sbjct: 261 SGFPSGHHQPPGGLESPLLLDSPTSRTPPPPS--CSSASSCSSSASSCSSASAASTPSGA 318
Query: 168 QQLCPYAAA 176
C AAA
Sbjct: 319 PTCCASAAA 327
Score = 28.9 bits (63), Expect = 9.0
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 327 CKYFEQGKGTCPFGSKCLYRHAYPDGR 353
C+ FE+ GTC +G KC + H + + R
Sbjct: 159 CRPFEES-GTCKYGEKCQFAHGFHELR 184
>gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens]
Length = 326
Score = 46.2 bits (108), Expect = 5e-05
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 8 CRYFMH-GVCREGSQCLFSHDL-----ANSKP---STIC-KYYQKGYCAYGTRCRYDHT- 56
CR F G CR G++C F+H L AN P + +C K+Y +G C YG+RC + H
Sbjct: 109 CRTFSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNP 168
Query: 57 RPSAAAGGAVGTMAHSV-----PSPAFHSPHPP 84
AA G + S+ PS SP PP
Sbjct: 169 SEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPP 201
>gi|125987603 cleavage and polyadenylation specific factor 4, 30kDa
isoform 2 [Homo sapiens]
Length = 244
Score = 45.4 bits (106), Expect = 9e-05
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 28/105 (26%)
Query: 4 KQITCRYFMHGVCREGSQCLFSHDLANSKPSTI--------------------------- 36
K + C++++ G+C++G QC F H+ +K
Sbjct: 64 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKD 123
Query: 37 CKYYQKGYCAYGTRCRYDHTRPSAAAGGAVGTMAHSVPSPAFHSP 81
C +Y +G+C +G CR+ HTR VG PS F P
Sbjct: 124 CPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEG-PSCKFMHP 167
Score = 40.8 bits (94), Expect = 0.002
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 8 CRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDH 55
C +F+ C +G C F H + + + +CK++ +G C G +C + H
Sbjct: 41 CEFFLKAACGKGGMCPFRH--ISGEKTVVCKHWLRGLCKKGDQCEFLH 86
Score = 33.5 bits (75), Expect = 0.37
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 8 CRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDHTR 57
C ++ G C+ G C H IC Y G+C G C++ H R
Sbjct: 124 CPWYDRGFCKHGPLCRHRHTRR-----VICVNYLVGFCPEGPSCKFMHPR 168
>gi|193788659 cleavage and polyadenylation specific factor 4-like
[Homo sapiens]
Length = 179
Score = 44.3 bits (103), Expect = 2e-04
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 8 CRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDH 55
C +F G+C +G C F HD + +CK++ +G C G C++ H
Sbjct: 41 CNFFTKGLCEKGKLCPFRHD--RGEKMVVCKHWLRGLCKKGDHCKFLH 86
Score = 40.0 bits (92), Expect = 0.004
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 27/79 (34%)
Query: 4 KQITCRYFMHGVCREGSQCLFSH-----------------DLANSKPSTI---------- 36
K + C++++ G+C++G C F H D +N + S +
Sbjct: 64 KMVVCKHWLRGLCKKGDHCKFLHQYDLTRMPECYFYSKFGDCSNKECSFLHVKPAFKSQD 123
Query: 37 CKYYQKGYCAYGTRCRYDH 55
C +Y +G+C G C+Y H
Sbjct: 124 CPWYDQGFCKDGPLCKYRH 142
Score = 35.0 bits (79), Expect = 0.13
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 4 KQITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRY 53
K C ++ G C++G C + H P +C Y G+C G +C++
Sbjct: 120 KSQDCPWYDQGFCKDGPLCKYRH-----VPRIMCLNYLVGFCPEGPKCQF 164
>gi|21630277 tripartite motif-containing 11 [Homo sapiens]
Length = 468
Score = 41.6 bits (96), Expect = 0.001
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 13/62 (20%)
Query: 234 QDKVCSICMEVILEKASASERRFGILSNCNHTYCLSCIRQWRCAKQFENPIIKSCPECRV 293
++ C+IC++ + ++++C H +C CIR RC Q E P +CPECR
Sbjct: 12 EEATCAICLDYFTDP---------VMTDCGHNFCRECIR--RCWGQPEGPY--ACPECRE 58
Query: 294 IS 295
+S
Sbjct: 59 LS 60
>gi|71043932 zinc finger, SWIM domain containing 2 [Homo sapiens]
Length = 633
Score = 39.3 bits (90), Expect = 0.007
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Query: 221 EHEMEKAFAFQASQDK--VCSICMEVILE-KASASERRFGILSNCNHTYCLSCIRQWRCA 277
EH E + Q D +CSIC E++LE K + RFG C ++ + C++
Sbjct: 128 EHVEEDGYIKQKEIDSEDICSICQELLLEKKLPVTFCRFG----CGNSIHIKCMKILANY 183
Query: 278 KQFENPIIKSCPECRVISEFVIPSVYWVEDQNKKNELIEAFKQGMGK------KACKYFE 331
+ N + CP CR EF + E +N + A K+ + K CK F
Sbjct: 184 QSTSNTSMLKCPLCR--KEFAPLKLILEEFKNSSKLVAAAEKERLDKHLGIPCNNCKQFP 241
Query: 332 QGKGTCPFGSKCLYRH 347
+G C ++C+ H
Sbjct: 242 I-EGKCYKCTECIEYH 256
>gi|5902054 ring finger protein 5 [Homo sapiens]
Length = 180
Score = 38.5 bits (88), Expect = 0.011
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 16/104 (15%)
Query: 238 CSICMEVILEKASASERRFGILSNCNHTYCLSCIRQWRCAKQFENPIIKSCPECRV-ISE 296
C+IC+E E ++S C H YC C+ QW + P + CP C+ IS
Sbjct: 27 CNICLETARE---------AVVSVCGHLYCWPCLHQWLETR----PERQECPVCKAGISR 73
Query: 297 FVIPSVYWVEDQNKKNELIEAFKQGMGKKACKYFEQGKGTCPFG 340
+ +Y Q ++ ++ + G++ E G PFG
Sbjct: 74 EKVVPLYGRGSQKPQDPRLKTPPRPQGQRPAP--ESRGGFQPFG 115
>gi|5454014 tripartite motif-containing 38 [Homo sapiens]
Length = 465
Score = 38.1 bits (87), Expect = 0.015
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 26/102 (25%)
Query: 234 QDKVCSICMEVILEKASASERRFGILSNCNHTYCLSCIRQWRCAKQFENPIIKS------ 287
++ CSIC+ ++ S NC H+YC CI + F+NP K
Sbjct: 12 EEATCSICLSLMTNPVSI---------NCGHSYCHLCITDF-----FKNPSQKQLRQETF 57
Query: 288 -CPECRVISEFVIPSVYWVEDQNKKNELIEAFKQGMGKKACK 328
CP+CR + F + S + + LIEA K+ + +C+
Sbjct: 58 CCPQCR--APFHMDS---LRPNKQLGSLIEALKETDQEMSCE 94
>gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo
sapiens]
Length = 346
Score = 37.7 bits (86), Expect = 0.019
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 16/92 (17%)
Query: 201 LHPFDPEQRKAHEKICMLTFEHEMEKAFAFQASQDKVCSICMEVILEKASASERRFGILS 260
L+ F QR E H S++ +C++C+E ERR +
Sbjct: 256 LYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLE---------ERRHPTAT 306
Query: 261 NCNHTYCLSCIRQWRCAKQFENPIIKSCPECR 292
C H +C CI W C+ + E CP CR
Sbjct: 307 PCGHLFCWECITAW-CSSKAE------CPLCR 331
>gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens]
Length = 326
Score = 37.7 bits (86), Expect = 0.019
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 16/92 (17%)
Query: 201 LHPFDPEQRKAHEKICMLTFEHEMEKAFAFQASQDKVCSICMEVILEKASASERRFGILS 260
L+ F QR E H S++ +C++C+E ERR +
Sbjct: 236 LYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLE---------ERRHPTAT 286
Query: 261 NCNHTYCLSCIRQWRCAKQFENPIIKSCPECR 292
C H +C CI W C+ + E CP CR
Sbjct: 287 PCGHLFCWECITAW-CSSKAE------CPLCR 311
>gi|114842410 zinc finger CCCH-type containing 11A [Homo sapiens]
Length = 810
Score = 37.7 bits (86), Expect = 0.019
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 8 CRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDH 55
C +F + C +G C F H A T+C +Q+G C + CR+ H
Sbjct: 8 CYFFFYSTCTKGDSCPFRHCEAAIGNETVCTLWQEGRC-FRQVCRFRH 54
>gi|117676384 splicing factor, arginine/serine-rich 2, interacting
protein [Homo sapiens]
Length = 1463
Score = 37.4 bits (85), Expect = 0.025
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 238 CSICMEVILEKASASERRFGILSNCNHTYCLSCIRQW 274
C IC+ +LEK G +CNH +C++CI +W
Sbjct: 41 CPICLNCLLEK------EVGFPESCNHVFCMTCILKW 71
>gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo
sapiens]
Length = 571
Score = 37.0 bits (84), Expect = 0.033
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 8 CRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAY-GTRCRYDH--TRPSAAAGG 64
C+Y+ C+ G +C + H ++ K CK+ +K C + C+YD T+P
Sbjct: 436 CKYWP--ACKNGDECAYHHPISPCKAFPNCKFAEK--CLFVHPNCKYDAKCTKPDCPFTH 491
Query: 65 AVGTMAHSVPSPAFHSPHPPS 85
+ P PA P PPS
Sbjct: 492 VSRRIPVLSPKPAVAPPAPPS 512
>gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo
sapiens]
Length = 736
Score = 37.0 bits (84), Expect = 0.033
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 8 CRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAY-GTRCRYDH--TRPSAAAGG 64
C+Y+ C+ G +C + H ++ K CK+ +K C + C+YD T+P
Sbjct: 601 CKYWP--ACKNGDECAYHHPISPCKAFPNCKFAEK--CLFVHPNCKYDAKCTKPDCPFTH 656
Query: 65 AVGTMAHSVPSPAFHSPHPPS 85
+ P PA P PPS
Sbjct: 657 VSRRIPVLSPKPAVAPPAPPS 677
>gi|15812180 butyrate response factor 1 [Homo sapiens]
Length = 338
Score = 36.6 bits (83), Expect = 0.043
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 8 CRYFM-HGVCREGSQCLFSHDLANSKPST--------ICK-YYQKGYCAYGTRCRYDH 55
CR F +G C+ G +C F+H + + T +C+ ++ G+C YG RC + H
Sbjct: 120 CRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 177
Score = 30.0 bits (66), Expect = 4.0
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 161 SSSYSNEQQLC-PYAAAGECRFGDACVYLHG 190
SS Y E LC P+ G C++GD C + HG
Sbjct: 112 SSRYKTE--LCRPFEENGACKYGDKCQFAHG 140
>gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens]
Length = 488
Score = 36.6 bits (83), Expect = 0.043
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 21/114 (18%)
Query: 238 CSICMEVILEKASASERRFGILSNCNHTYCLSCIRQWRCAKQFENPIIKSCPECRVISEF 297
CS+C+E + E ++ C H +C +CI +W + + P CP CR S +
Sbjct: 29 CSVCLEYLKEP---------VIIECGHNFCKACITRWWEDLERDFP----CPVCRKTSRY 75
Query: 298 VIPSVYWVEDQNKKNELIEAFKQGMGKKACKYFEQGKGTCPFGSKCLYRHAYPD 351
+ + ++E KQ +A K + + CP + L Y D
Sbjct: 76 -----RSLRPNRQLGSMVEIAKQ---LQAVKRKIRDESLCPQHHEALSLFCYED 121
>gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens]
Length = 518
Score = 36.6 bits (83), Expect = 0.043
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 21/114 (18%)
Query: 238 CSICMEVILEKASASERRFGILSNCNHTYCLSCIRQWRCAKQFENPIIKSCPECRVISEF 297
CS+C+E + E ++ C H +C +CI +W + + P CP CR S +
Sbjct: 29 CSVCLEYLKEP---------VIIECGHNFCKACITRWWEDLERDFP----CPVCRKTSRY 75
Query: 298 VIPSVYWVEDQNKKNELIEAFKQGMGKKACKYFEQGKGTCPFGSKCLYRHAYPD 351
+ + ++E KQ +A K + + CP + L Y D
Sbjct: 76 -----RSLRPNRQLGSMVEIAKQ---LQAVKRKIRDESLCPQHHEALSLFCYED 121
>gi|35493801 ring finger protein 19 [Homo sapiens]
Length = 838
Score = 36.6 bits (83), Expect = 0.043
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 252 SERRFGILSNCNHTYCLSCIRQWRCAKQFENPIIKSCPEC 291
S+ RF + C+H C+ C+RQ+ + E+ + SCPEC
Sbjct: 140 SKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPEC 179
>gi|35493782 ring finger protein 19 [Homo sapiens]
Length = 838
Score = 36.6 bits (83), Expect = 0.043
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 252 SERRFGILSNCNHTYCLSCIRQWRCAKQFENPIIKSCPEC 291
S+ RF + C+H C+ C+RQ+ + E+ + SCPEC
Sbjct: 140 SKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPEC 179
>gi|22749117 hypothetical protein LOC152405 [Homo sapiens]
Length = 536
Score = 36.6 bits (83), Expect = 0.043
Identities = 20/77 (25%), Positives = 40/77 (51%)
Query: 93 KTNSHEPGKREKRTLVLRDRNLSGMAERKTQPSMVSNPGSCSDPQPSPEMKPHSYLDAIR 152
+T+ G+ E+R DR +SG AER+T + S+ +PS ++ S + + +
Sbjct: 177 QTDHRMAGQSERRASEQMDRRMSGEAERRTSEQITHRLSKLSERRPSVQIDSGSSVPSDQ 236
Query: 153 SGLDDVEASSSYSNEQQ 169
S +++ SS ++Q+
Sbjct: 237 SPSVQIDSGSSVPSDQR 253
>gi|39777586 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [Homo
sapiens]
Length = 1386
Score = 36.2 bits (82), Expect = 0.056
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 36 ICKYYQKGYCAYGTRCRYDHTRP 58
ICK+Y KG C +G++CR+ H P
Sbjct: 304 ICKFYLKGNCKFGSKCRFKHEVP 326
Score = 32.0 bits (71), Expect = 1.1
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 327 CKYFEQGKGTCPFGSKCLYRHAYPDGRL 354
CK++ KG C FGSKC ++H P ++
Sbjct: 305 CKFYL--KGNCKFGSKCRFKHEVPPNQI 330
Score = 29.3 bits (64), Expect = 6.9
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 8 CRYFMHGVCREGSQCLFSHDL 28
C++++ G C+ GS+C F H++
Sbjct: 305 CKFYLKGNCKFGSKCRFKHEV 325
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,576,547
Number of Sequences: 37866
Number of extensions: 918625
Number of successful extensions: 3529
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 3259
Number of HSP's gapped (non-prelim): 343
length of query: 416
length of database: 18,247,518
effective HSP length: 105
effective length of query: 311
effective length of database: 14,271,588
effective search space: 4438463868
effective search space used: 4438463868
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.