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Search of human proteins with 32698876
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|32698876 COX assembly mitochondrial protein homolog [Homo
sapiens]
(106 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|32698876 COX assembly mitochondrial protein homolog [Homo sap... 221 1e-58
gi|154146189 dedicator of cytokinesis 10 [Homo sapiens] 30 0.55
gi|9910184 hypothetical protein LOC56942 [Homo sapiens] 29 0.94
gi|20127479 RNA binding motif protein 10 isoform 1 [Homo sapiens] 28 1.6
gi|23111018 RNA binding motif protein 10 isoform 2 [Homo sapiens] 28 1.6
gi|7657369 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8... 27 2.7
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 27 2.7
gi|149363685 hypothetical protein LOC23379 [Homo sapiens] 27 3.6
gi|239508879 PREDICTED: similar to zinc finger protein 208 [Homo... 27 3.6
gi|4507579 tumor necrosis factor receptor superfamily, member 4 ... 27 3.6
gi|4502895 colipase preproprotein [Homo sapiens] 27 4.6
gi|58533161 PDZ and LIM domain 5 isoform e [Homo sapiens] 27 4.6
gi|154146231 DMRT-like family A2 [Homo sapiens] 27 4.6
gi|226529227 zinc finger protein 716 [Homo sapiens] 26 6.1
gi|239754572 PREDICTED: zinc finger protein 716 [Homo sapiens] 26 6.1
gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens] 26 6.1
gi|239743176 PREDICTED: zinc finger protein 716 [Homo sapiens] 26 6.1
gi|239508840 PREDICTED: zinc finger protein 716 [Homo sapiens] 26 6.1
gi|4504805 basic leucine zipper nuclear factor 1 [Homo sapiens] 26 6.1
gi|15619008 vacuolar protein sorting 13A isoform B [Homo sapiens] 26 6.1
gi|66346676 vacuolar protein sorting 13A isoform D [Homo sapiens] 26 6.1
gi|66346674 vacuolar protein sorting 13A isoform A [Homo sapiens] 26 6.1
gi|66346672 vacuolar protein sorting 13A isoform C [Homo sapiens] 26 6.1
gi|157426898 tripartite motif-containing 10 isoform 1 [Homo sapi... 26 6.1
gi|157426896 tripartite motif-containing 10 isoform 2 [Homo sapi... 26 6.1
gi|115495445 ankyrin repeat domain 30A [Homo sapiens] 26 7.9
gi|222831595 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 [Homo sap... 26 7.9
gi|88759339 aster-associated protein [Homo sapiens] 26 7.9
>gi|32698876 COX assembly mitochondrial protein homolog [Homo
sapiens]
Length = 106
Score = 221 bits (563), Expect = 1e-58
Identities = 106/106 (100%), Positives = 106/106 (100%)
Query: 1 MALDPADQHLRHVEKDVLIPKIMREKAKERCSEQVQDFTKCCKNSGVLMVVKCRKENSAL 60
MALDPADQHLRHVEKDVLIPKIMREKAKERCSEQVQDFTKCCKNSGVLMVVKCRKENSAL
Sbjct: 1 MALDPADQHLRHVEKDVLIPKIMREKAKERCSEQVQDFTKCCKNSGVLMVVKCRKENSAL 60
Query: 61 KECLTAYYNDPAFYEECKMEYLKEREEFRKTGIPTKKRLQKLPTSM 106
KECLTAYYNDPAFYEECKMEYLKEREEFRKTGIPTKKRLQKLPTSM
Sbjct: 61 KECLTAYYNDPAFYEECKMEYLKEREEFRKTGIPTKKRLQKLPTSM 106
>gi|154146189 dedicator of cytokinesis 10 [Homo sapiens]
Length = 2186
Score = 29.6 bits (65), Expect = 0.55
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 14/70 (20%)
Query: 2 ALDPADQHLRHVEKDVLIPKIMREKAKERCSEQVQDFTKCCKNSGVLMVVKCRKENSALK 61
+LDP L+ +KD+L P+ + + +E+ ++++ ++ C+ NS L+
Sbjct: 361 SLDPDIDTLKLQKKDLLEPESVIKPFEEKAAKRI--------------MIICKALNSNLQ 406
Query: 62 ECLTAYYNDP 71
C+T NDP
Sbjct: 407 GCVTENENDP 416
>gi|9910184 hypothetical protein LOC56942 [Homo sapiens]
Length = 79
Score = 28.9 bits (63), Expect = 0.94
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 14/76 (18%)
Query: 29 ERCSEQVQDFTKCCKNSGVLMVVK-CRKENSALKECLTAYYNDPAFYEECKMEYLKEREE 87
E C+ + +C KN +L C + L++CL K EY++ R +
Sbjct: 12 EECNVLINLLKECHKNHNILKFFGYCNDVDRELRKCL-------------KNEYVENRTK 58
Query: 88 FRKTGIPTKKRLQKLP 103
R+ GI +K+L P
Sbjct: 59 SREHGIAMRKKLFNPP 74
>gi|20127479 RNA binding motif protein 10 isoform 1 [Homo sapiens]
Length = 930
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 60 LKECLTAYYNDPA-------FYEECKMEYLKEREEFRKTGIPTKKRLQKLP 103
L + ++ +Y+DP +C ++ K RE+ K G+P + QKLP
Sbjct: 198 LGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLP 248
>gi|23111018 RNA binding motif protein 10 isoform 2 [Homo sapiens]
Length = 852
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 60 LKECLTAYYNDPA-------FYEECKMEYLKEREEFRKTGIPTKKRLQKLP 103
L + ++ +Y+DP +C ++ K RE+ K G+P + QKLP
Sbjct: 121 LGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLP 171
>gi|7657369 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8,
19kDa [Homo sapiens]
Length = 172
Score = 27.3 bits (59), Expect = 2.7
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 28 KERCSEQVQDFTKCCKNSGVLMVVKCRKENSALKECL 64
K C+E ++ C +G + CRK+ + EC+
Sbjct: 75 KRHCAEPFTEYWTCIDYTGQQLFRHCRKQQAKFDECV 111
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 27.3 bits (59), Expect = 2.7
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 4 DPADQHLRHVEKDVLIPKIMREKAKERCSEQVQDFTKCCKNSGVLMVVKCRKENSALKEC 63
D + L+H+ D I + E A+ER +E +D + +LMV KEN L
Sbjct: 2678 DKLKKELKHLHHDAGIMRNETETAEERVAELARDLVE--MEQKLLMVT---KENKGLTAQ 2732
Query: 64 LTAYYNDPAFYEECKMEYLKEREEFRKTGIPTKKRLQKL 102
+ ++ + + + +E +E ++ + K L +L
Sbjct: 2733 IQSFGRSMSSLQNSRDHANEELDELKRKYDASLKELAQL 2771
>gi|149363685 hypothetical protein LOC23379 [Homo sapiens]
Length = 2266
Score = 26.9 bits (58), Expect = 3.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 52 KCRKENSALKECLTAYYNDPAFYEECKMEYLKEREEFRKTGIPTKK 97
KC++E +LK L + Y++ EY + +EE K+ KK
Sbjct: 87 KCQEELGSLKAELEEKKSSLKLYQDTHQEYARVKEECLKSDAQKKK 132
>gi|239508879 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1102
Score = 26.9 bits (58), Expect = 3.6
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 30 RCSEQVQDFTKCCKNSGVLMVVKCRKENSALKECLTAYYNDPAFYEECKMEYLK----ER 85
+C + F KCCK+ G V K + +K+CL+ N +C + + K R
Sbjct: 160 KCGHENLQFKKCCKSVGECEVHK--GGYNEVKQCLSNTQNKIFQTHKCVIVFGKFSNCNR 217
Query: 86 EEFRKTG 92
E R TG
Sbjct: 218 HETRYTG 224
>gi|4507579 tumor necrosis factor receptor superfamily, member 4
precursor [Homo sapiens]
Length = 277
Score = 26.9 bits (58), Expect = 3.6
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 40 KCCKNS--GVLMVVKC-RKENSALKECLTAYYNDPAFYEECK 78
+CC G MV +C R +N+ + C +YND + CK
Sbjct: 41 RCCHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSSKPCK 82
>gi|4502895 colipase preproprotein [Homo sapiens]
Length = 112
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 29 ERCSEQVQDFTKCCKNSGVLMVVKCRKENSALKEC 63
E C Q + CC++S L + +C S EC
Sbjct: 32 ELCMNSAQCKSNCCQHSSALGLARCTSMASENSEC 66
>gi|58533161 PDZ and LIM domain 5 isoform e [Homo sapiens]
Length = 214
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 35 VQDFTKCCKNSGVLMVVKCRKENSALKECLTAYYNDPAFYEECKMEYLKEREEFRKTGIP 94
VQ T+ N G + + R + E T +Y+ P + K +++ E++R
Sbjct: 95 VQKKTQVTNNPGTVKIPPKRPPRKHIVERYTEFYHVPTHSDASKKRLIEDTEDWRPRTGT 154
Query: 95 TKKR 98
T+ R
Sbjct: 155 TQSR 158
>gi|154146231 DMRT-like family A2 [Homo sapiens]
Length = 542
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 30 RCSEQVQDFTKC--CKNSGVLMVVKCRKENSALKECLTA 66
R +E+ KC C+N GV+ +K K K+CL A
Sbjct: 59 RAAEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCA 97
>gi|226529227 zinc finger protein 716 [Homo sapiens]
Length = 495
Score = 26.2 bits (56), Expect = 6.1
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 15 KDVLIPKIMREKAKERCSEQVQDFTKCCKNSGVLMVVKCRKENSALKECLTAYYNDPAFY 74
KD L I+R K C ++ KCCK+ G V K + + +CL+A N
Sbjct: 104 KDSLQKVILRRYGK--CGQEDLQVKKCCKSVGECEVHK--GGYNYVNQCLSATQNKTFQT 159
Query: 75 EECKMEYLK----EREEFRKTG 92
+C + K R + R TG
Sbjct: 160 HKCVKVFGKFSNSNRHKTRHTG 181
>gi|239754572 PREDICTED: zinc finger protein 716 [Homo sapiens]
Length = 412
Score = 26.2 bits (56), Expect = 6.1
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 15 KDVLIPKIMREKAKERCSEQVQDFTKCCKNSGVLMVVKCRKENSALKECLTAYYNDPAFY 74
KD L I+R K C ++ KCCK+ G V K + + +CL+A N
Sbjct: 104 KDSLQKVILRRYGK--CGQEDLQVKKCCKSVGECEVHK--GGYNYVNQCLSATQNKTFQT 159
Query: 75 EECKMEYLK----EREEFRKTG 92
+C + K R + R TG
Sbjct: 160 HKCVKVFGKFSNSNRHKTRHTG 181
>gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens]
Length = 1215
Score = 26.2 bits (56), Expect = 6.1
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 15 KDVLIPKIMREKAKERCSEQVQDFTKCCKNSGVLMVVKCRKENSALKECLTAYYNDPAFY 74
KD L I+R K C ++ KCCK+ G V K + + +CL+A N
Sbjct: 907 KDSLQKVILRRYGK--CGQEDLQVKKCCKSVGECEVHK--GGYNYVNQCLSATQNKTFQT 962
Query: 75 EECKMEYLK----EREEFRKTG 92
+C + K R + R TG
Sbjct: 963 HKCVKVFGKFSNSNRHKTRHTG 984
>gi|239743176 PREDICTED: zinc finger protein 716 [Homo sapiens]
Length = 412
Score = 26.2 bits (56), Expect = 6.1
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 15 KDVLIPKIMREKAKERCSEQVQDFTKCCKNSGVLMVVKCRKENSALKECLTAYYNDPAFY 74
KD L I+R K C ++ KCCK+ G V K + + +CL+A N
Sbjct: 104 KDSLQKVILRRYGK--CGQEDLQVKKCCKSVGECEVHK--GGYNYVNQCLSATQNKTFQT 159
Query: 75 EECKMEYLK----EREEFRKTG 92
+C + K R + R TG
Sbjct: 160 HKCVKVFGKFSNSNRHKTRHTG 181
>gi|239508840 PREDICTED: zinc finger protein 716 [Homo sapiens]
Length = 412
Score = 26.2 bits (56), Expect = 6.1
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 15 KDVLIPKIMREKAKERCSEQVQDFTKCCKNSGVLMVVKCRKENSALKECLTAYYNDPAFY 74
KD L I+R K C ++ KCCK+ G V K + + +CL+A N
Sbjct: 104 KDSLQKVILRRYGK--CGQEDLQVKKCCKSVGECEVHK--GGYNYVNQCLSATQNKTFQT 159
Query: 75 EECKMEYLK----EREEFRKTG 92
+C + K R + R TG
Sbjct: 160 HKCVKVFGKFSNSNRHKTRHTG 181
>gi|4504805 basic leucine zipper nuclear factor 1 [Homo sapiens]
Length = 400
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 80 EYLKEREEFRKTGIPTKKRLQKLPTSM 106
+ L ERE+FR+ I T+K L++L S+
Sbjct: 249 DLLSEREQFRQEMIATQKLLEELLVSL 275
>gi|15619008 vacuolar protein sorting 13A isoform B [Homo sapiens]
Length = 3095
Score = 26.2 bits (56), Expect = 6.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 37 DFTKCCKNSGVLMVVKCRKENSALKECL 64
DF + KN G L+ KCR +N + + L
Sbjct: 2051 DFEEIIKNDGALLKKKCRSKNPSKESFL 2078
>gi|66346676 vacuolar protein sorting 13A isoform D [Homo sapiens]
Length = 3069
Score = 26.2 bits (56), Expect = 6.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 37 DFTKCCKNSGVLMVVKCRKENSALKECL 64
DF + KN G L+ KCR +N + + L
Sbjct: 2051 DFEEIIKNDGALLKKKCRSKNPSKESFL 2078
>gi|66346674 vacuolar protein sorting 13A isoform A [Homo sapiens]
Length = 3174
Score = 26.2 bits (56), Expect = 6.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 37 DFTKCCKNSGVLMVVKCRKENSALKECL 64
DF + KN G L+ KCR +N + + L
Sbjct: 2051 DFEEIIKNDGALLKKKCRSKNPSKESFL 2078
>gi|66346672 vacuolar protein sorting 13A isoform C [Homo sapiens]
Length = 3135
Score = 26.2 bits (56), Expect = 6.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 37 DFTKCCKNSGVLMVVKCRKENSALKECL 64
DF + KN G L+ KCR +N + + L
Sbjct: 2012 DFEEIIKNDGALLKKKCRSKNPSKESFL 2039
>gi|157426898 tripartite motif-containing 10 isoform 1 [Homo
sapiens]
Length = 481
Score = 26.2 bits (56), Expect = 6.1
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 31 CSEQVQDFTKCCKNSGVLMVVKCRKENSALKECLTAYYNDPAFYEE----CKMEYLKERE 86
C E + C++ + + V CR+ + + A Y E C KERE
Sbjct: 99 CQEHGEKIYFFCEDDEMQLCVVCREAGEHATHTMRFLEDAAAPYREQIHKCLKCLRKERE 158
Query: 87 EFRKTGIPTKKRLQKLPTSM 106
E ++ KR+Q L T +
Sbjct: 159 EIQEIQSRENKRMQVLLTQV 178
>gi|157426896 tripartite motif-containing 10 isoform 2 [Homo
sapiens]
Length = 395
Score = 26.2 bits (56), Expect = 6.1
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 31 CSEQVQDFTKCCKNSGVLMVVKCRKENSALKECLTAYYNDPAFYEE----CKMEYLKERE 86
C E + C++ + + V CR+ + + A Y E C KERE
Sbjct: 99 CQEHGEKIYFFCEDDEMQLCVVCREAGEHATHTMRFLEDAAAPYREQIHKCLKCLRKERE 158
Query: 87 EFRKTGIPTKKRLQKLPTSM 106
E ++ KR+Q L T +
Sbjct: 159 EIQEIQSRENKRMQVLLTQV 178
>gi|115495445 ankyrin repeat domain 30A [Homo sapiens]
Length = 1341
Score = 25.8 bits (55), Expect = 7.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 14 EKDVLIPKIMREKAKERCSEQVQDFTKCCK 43
+KDV +PK +K ++ S +++D T K
Sbjct: 878 QKDVCVPKATHQKEMDKISGKLEDSTSLSK 907
>gi|222831595 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 [Homo
sapiens]
Length = 1712
Score = 25.8 bits (55), Expect = 7.9
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 33 EQVQDFTKCCKNSGVLMVVKCRKENSALKECLTAYYNDPAFYEECKMEYLKEREEFRKTG 92
+ ++DF K CK+S VK + E L CL A+ E C+ E K ++
Sbjct: 621 KSLEDFLKSCKSS----CVKLQVEMVGLTACLKAW------KEHCRSEEGKTTKDL-SIA 669
Query: 93 IPTKKRLQKL 102
+ KR+ L
Sbjct: 670 VQVMKRIHSL 679
>gi|88759339 aster-associated protein [Homo sapiens]
Length = 647
Score = 25.8 bits (55), Expect = 7.9
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 52 KCRKENSALK-ECLTAYYNDPAFYEECKMEYLKEREEFRKTGIPTKKRLQK 101
K +EN+A K E L A+ ++E KMEYLKE+ + KK+ ++
Sbjct: 500 KTEEENAARKGEALQAFEK----WKEKKMEYLKEKNRKEREYERAKKQKEE 546
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.132 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,219,954
Number of Sequences: 37866
Number of extensions: 162643
Number of successful extensions: 511
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 496
Number of HSP's gapped (non-prelim): 28
length of query: 106
length of database: 18,247,518
effective HSP length: 76
effective length of query: 30
effective length of database: 15,369,702
effective search space: 461091060
effective search space used: 461091060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.