Guide to the Human Genome
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Name: C16orf61 Sequence: fasta or formatted (79aa) NCBI GI: 9910184
Description:

hypothetical protein LOC56942

Referenced in:

Additional Conserved Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.3          1           1
 C cysteine            5.1          4           1
 D aspartate           3.8          3           1
 E glutamate          12.7         10           2
 F phenylalanine       3.8          3           2
 G glycine             2.5          2           1
 H histidine           7.6          6           1
 I isoleucine          3.8          3           1
 K lysine             11.4          9           2
 L leucine            11.4          9           2
 M methionine          2.5          2           1
 N asparagine         10.1          8           1
 P proline             5.1          4           2
 Q glutamine           0.0          0           0
 R arginine            6.3          5           1
 S serine              3.8          3           1
 T threonine           2.5          2           1
 V valine              3.8          3           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC56942 
CCDC38                0.061   coiled-coil domain containing 38 
CMC1                  0.027   COX assembly mitochondrial protein homolog 
KAT2A                 0.014   general control of amino acid synthesis 5-like 2 [H...
OR5K4                 0.014   olfactory receptor, family 5, subfamily K, member 4 ...
ZNF200                0.014   zinc finger protein 200 isoform 3 
ZNF200                0.014   zinc finger protein 200 isoform 3 
ZNF200                0.014   zinc finger protein 200 isoform 3 
ZNF200                0.014   zinc finger protein 200 isoform 1 
ZNF200                0.014   zinc finger protein 200 isoform 2 
ZNF200                0.014   zinc finger protein 200 isoform 1 
KAT2B                 0.007   K(lysine) acetyltransferase 2B 
GFRA1                 0.007   GDNF family receptor alpha 1 isoform b preproprotei...
GFRA1                 0.007   GDNF family receptor alpha 1 isoform b preproprotein...
GFRA1                 0.007   GDNF family receptor alpha 1 isoform a preproprotein ...
ALDH3A1               0.007   aldehyde dehydrogenase 3A1 
ALDH3A1               0.007   aldehyde dehydrogenase 3A1 
ALDH3A1               0.007   aldehyde dehydrogenase 3A1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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