Search of human proteins with 32483363

Search of human proteins with 32483363

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|32483363 apoptotic peptidase activating factor 1 isoform e
[Homo sapiens]
         (338 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|32483363 apoptotic peptidase activating factor 1 isoform e [H...   678   0.0  
gi|32483361 apoptotic peptidase activating factor 1 isoform d [H...   634   0.0  
gi|32483359 apoptotic peptidase activating factor 1 isoform c [H...   634   0.0  
gi|4502123 apoptotic peptidase activating factor 1 isoform b [Ho...   605   e-173
gi|7108333 apoptotic peptidase activating factor 1 isoform a [Ho...   605   e-173
gi|45237195 Janus kinase and microtubule interacting protein 2 [...    31   1.8  
gi|145580600 schlafen family member 5 [Homo sapiens]                   30   4.0  
gi|45643125 nuclear VCP-like isoform 2 [Homo sapiens]                  29   5.2  
gi|45643123 nuclear VCP-like isoform 1 [Homo sapiens]                  29   5.2  
gi|110832839 ATP-binding cassette, sub-family C, member 9 isofor...    29   6.8  
gi|110832835 ATP-binding cassette, sub-family C, member 9 isofor...    29   6.8  
gi|110832837 ATP-binding cassette, sub-family C, member 9 isofor...    29   6.8  
gi|134133246 hypothetical protein LOC285753 [Homo sapiens]             29   6.8  
gi|28603844 hypothetical protein LOC285753 [Homo sapiens]              29   6.8  
gi|7662404 caspase recruitment domain family, member 8 [Homo sap...    28   8.9  

>gi|32483363 apoptotic peptidase activating factor 1 isoform e [Homo
           sapiens]
          Length = 338

 Score =  678 bits (1750), Expect = 0.0
 Identities = 338/338 (100%), Positives = 338/338 (100%)

Query: 1   MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI 60
           MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI
Sbjct: 1   MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI 60

Query: 61  LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVP 120
           LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVP
Sbjct: 61  LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVP 120

Query: 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG 180
           QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG
Sbjct: 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG 180

Query: 181 GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL 240
           GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL
Sbjct: 181 GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL 240

Query: 241 ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN 300
           ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN
Sbjct: 241 ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN 300

Query: 301 MKKADLPEQAHSIIKECKVVERCHWGILTDLLHKWNQS 338
           MKKADLPEQAHSIIKECKVVERCHWGILTDLLHKWNQS
Sbjct: 301 MKKADLPEQAHSIIKECKVVERCHWGILTDLLHKWNQS 338


>gi|32483361 apoptotic peptidase activating factor 1 isoform d [Homo
           sapiens]
          Length = 1205

 Score =  634 bits (1636), Expect = 0.0
 Identities = 322/338 (95%), Positives = 326/338 (96%), Gaps = 3/338 (0%)

Query: 1   MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI 60
           MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI
Sbjct: 1   MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI 60

Query: 61  LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVP 120
           LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVP
Sbjct: 61  LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVP 120

Query: 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG 180
           QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG
Sbjct: 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG 180

Query: 181 GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL 240
           GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL
Sbjct: 181 GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL 240

Query: 241 ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN 300
           ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN
Sbjct: 241 ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN 300

Query: 301 MKKADLPEQAHSIIKECK---VVERCHWGILTDLLHKW 335
           MKKADLPEQAHSIIKECK   +V      +L D  ++W
Sbjct: 301 MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRW 338


>gi|32483359 apoptotic peptidase activating factor 1 isoform c [Homo
           sapiens]
          Length = 1248

 Score =  634 bits (1636), Expect = 0.0
 Identities = 322/338 (95%), Positives = 326/338 (96%), Gaps = 3/338 (0%)

Query: 1   MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI 60
           MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI
Sbjct: 1   MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI 60

Query: 61  LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVP 120
           LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVP
Sbjct: 61  LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVP 120

Query: 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG 180
           QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG
Sbjct: 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG 180

Query: 181 GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL 240
           GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL
Sbjct: 181 GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL 240

Query: 241 ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN 300
           ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN
Sbjct: 241 ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN 300

Query: 301 MKKADLPEQAHSIIKECK---VVERCHWGILTDLLHKW 335
           MKKADLPEQAHSIIKECK   +V      +L D  ++W
Sbjct: 301 MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRW 338


>gi|4502123 apoptotic peptidase activating factor 1 isoform b [Homo
           sapiens]
          Length = 1194

 Score =  605 bits (1559), Expect = e-173
 Identities = 311/338 (92%), Positives = 315/338 (93%), Gaps = 14/338 (4%)

Query: 1   MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI 60
           MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI
Sbjct: 1   MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI 60

Query: 61  LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVP 120
           LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSS           VRTVLCEGGVP
Sbjct: 61  LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSS-----------VRTVLCEGGVP 109

Query: 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG 180
           QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG
Sbjct: 110 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG 169

Query: 181 GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL 240
           GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL
Sbjct: 170 GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL 229

Query: 241 ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN 300
           ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN
Sbjct: 230 ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN 289

Query: 301 MKKADLPEQAHSIIKECK---VVERCHWGILTDLLHKW 335
           MKKADLPEQAHSIIKECK   +V      +L D  ++W
Sbjct: 290 MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRW 327


>gi|7108333 apoptotic peptidase activating factor 1 isoform a [Homo
           sapiens]
          Length = 1237

 Score =  605 bits (1559), Expect = e-173
 Identities = 311/338 (92%), Positives = 315/338 (93%), Gaps = 14/338 (4%)

Query: 1   MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI 60
           MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI
Sbjct: 1   MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI 60

Query: 61  LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVP 120
           LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSS           VRTVLCEGGVP
Sbjct: 61  LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSS-----------VRTVLCEGGVP 109

Query: 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG 180
           QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG
Sbjct: 110 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG 169

Query: 181 GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL 240
           GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL
Sbjct: 170 GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL 229

Query: 241 ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN 300
           ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN
Sbjct: 230 ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN 289

Query: 301 MKKADLPEQAHSIIKECK---VVERCHWGILTDLLHKW 335
           MKKADLPEQAHSIIKECK   +V      +L D  ++W
Sbjct: 290 MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRW 327


>gi|45237195 Janus kinase and microtubule interacting protein 2
           [Homo sapiens]
          Length = 810

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 44/236 (18%), Positives = 89/236 (37%), Gaps = 29/236 (12%)

Query: 4   KARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILKK 63
           K+ N L Q  E  E +     +++       LT   E+ +R    ++       K I + 
Sbjct: 375 KSLNDLDQANEEQETEFLKLQVIEQQNIIDELTRDREKLIRRRKHRRSS-----KPIKRP 429

Query: 64  DNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVPQRP 123
             D ++ +    +      +A+   D  P        +S++   S +R            
Sbjct: 430 VLDPFIGYDEDSMDSETSSMASFRTDRTPATPDDDLDESLAAEESELR------------ 477

Query: 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG--- 180
             F    K   A+Q+  + L+ + G +         +  L AE +R  + +E        
Sbjct: 478 --FRQLTKEYQALQRAYALLQEQTGGIIDAEREAKAQEQLQAEVLRYKAKIEDLEATLAQ 535

Query: 181 ---GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR 233
                HWV    +DK   + + Q L  ++++ E+ + RL   +++A+D+  +L  R
Sbjct: 536 KGQDSHWV----EDKQLFIKRNQELLEKIEKQEAENHRLQQELQDARDQNELLEFR 587


>gi|145580600 schlafen family member 5 [Homo sapiens]
          Length = 891

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 17/72 (23%), Positives = 33/72 (45%)

Query: 132 LVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191
           L N   + LSK   +   + +HG+ G GK++LA   +     +  C P  + ++   +  
Sbjct: 556 LTNKQYELLSKNLRKTRELFVHGLPGSGKTILALRIMEKIRNVFHCEPANILYICENQPL 615

Query: 192 KSGLLMKLQNLC 203
           K  +    +N+C
Sbjct: 616 KKLVSFSKKNIC 627


>gi|45643125 nuclear VCP-like isoform 2 [Homo sapiens]
          Length = 750

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 13/160 (8%)

Query: 16  LEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNAL 75
           L++  K +  M+ + S G     +EE++  EPT + +  +   + L +D D        L
Sbjct: 387 LQEQQKKNPEMEDLPSKGV----QEERLGTEPTSETQDELQRLLGLLRDQDP-------L 435

Query: 76  LHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVPQRPVVFVTRKKLVNA 135
             E  + L   L+D I  +SS        G  +       + G  +     +T   L   
Sbjct: 436 SEEQMQGLCIELNDFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAILAPV 495

Query: 136 IQQKLSKLKG--EPGWVTIHGMAGCGKSVLAAEAVRDHSL 173
                 K  G   P  V + G  GCGK++LA     +  L
Sbjct: 496 RNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL 535


>gi|45643123 nuclear VCP-like isoform 1 [Homo sapiens]
          Length = 856

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 13/160 (8%)

Query: 16  LEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNAL 75
           L++  K +  M+ + S G     +EE++  EPT + +  +   + L +D D        L
Sbjct: 493 LQEQQKKNPEMEDLPSKGV----QEERLGTEPTSETQDELQRLLGLLRDQDP-------L 541

Query: 76  LHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVPQRPVVFVTRKKLVNA 135
             E  + L   L+D I  +SS        G  +       + G  +     +T   L   
Sbjct: 542 SEEQMQGLCIELNDFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAILAPV 601

Query: 136 IQQKLSKLKG--EPGWVTIHGMAGCGKSVLAAEAVRDHSL 173
                 K  G   P  V + G  GCGK++LA     +  L
Sbjct: 602 RNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL 641


>gi|110832839 ATP-binding cassette, sub-family C, member 9 isoform
           SUR2A-delta-14 [Homo sapiens]
          Length = 1513

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 152 IHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKS 193
           I G  GCGKS L    + +   LE    G VHW +V + + S
Sbjct: 667 IVGQVGCGKSSLLLAILGEMQTLE----GKVHWSNVNESEPS 704


>gi|110832835 ATP-binding cassette, sub-family C, member 9 isoform
           SUR2A [Homo sapiens]
          Length = 1549

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 152 IHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKS 193
           I G  GCGKS L    + +   LE    G VHW +V + + S
Sbjct: 703 IVGQVGCGKSSLLLAILGEMQTLE----GKVHWSNVNESEPS 740


>gi|110832837 ATP-binding cassette, sub-family C, member 9 isoform
           SUR2B [Homo sapiens]
          Length = 1549

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 152 IHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKS 193
           I G  GCGKS L    + +   LE    G VHW +V + + S
Sbjct: 703 IVGQVGCGKSSLLLAILGEMQTLE----GKVHWSNVNESEPS 740


>gi|134133246 hypothetical protein LOC285753 [Homo sapiens]
          Length = 460

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 189 KQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRL 227
           K+D S  L   Q+ CT L++   +++R+ LN+E  K+ +
Sbjct: 112 KKDISIQLSSAQSRCTLLEKQLEYTKRMVLNVEREKNMI 150


>gi|28603844 hypothetical protein LOC285753 [Homo sapiens]
          Length = 460

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 189 KQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRL 227
           K+D S  L   Q+ CT L++   +++R+ LN+E  K+ +
Sbjct: 112 KKDISIQLSSAQSRCTLLEKQLEYTKRMVLNVEREKNMI 150


>gi|7662404 caspase recruitment domain family, member 8 [Homo
           sapiens]
          Length = 431

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 12  HREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILKK 63
           HR+   +      ++D +  +  LT +E+E V  E T+Q +   L+ M+ KK
Sbjct: 352 HRQLQARMGDLKGVLDDLQDNEVLTENEKELVEQEKTRQSKNEALLSMVEKK 403


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,484,342
Number of Sequences: 37866
Number of extensions: 529833
Number of successful extensions: 1387
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1375
Number of HSP's gapped (non-prelim): 18
length of query: 338
length of database: 18,247,518
effective HSP length: 103
effective length of query: 235
effective length of database: 14,347,320
effective search space: 3371620200
effective search space used: 3371620200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.