BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|32130526 chemokine-like factor superfamily 3 [Homo sapiens] (182 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|115385972 chemokine-like factor superfamily 3 [Homo sapiens] 371 e-103 gi|32130528 chemokine-like factor superfamily 3 [Homo sapiens] 371 e-103 gi|32130526 chemokine-like factor superfamily 3 [Homo sapiens] 371 e-103 gi|21389401 chemokine-like factor superfamily 3 [Homo sapiens] 371 e-103 gi|19923993 chemokine-like factor superfamily 5 isoform a [Homo ... 98 3e-21 gi|4505893 proteolipid protein 2 (colonic epithelium-enriched) [... 65 4e-11 gi|82546841 chemokine-like factor superfamily 5 isoform c [Homo ... 59 3e-09 gi|31657096 chemokine-like factor superfamily 4 isoform 2 [Homo ... 48 5e-06 gi|30520333 chemokine-like factor superfamily 4 isoform 1 [Homo ... 48 5e-06 gi|8393581 chemokine-like factor isoform a [Homo sapiens] 42 2e-04 gi|8923370 CKLF-like MARVEL transmembrane domain containing 6 [H... 40 0.001 gi|93141024 chemokine-like factor isoform e [Homo sapiens] 37 0.007 gi|148743783 chemokine-like factor superfamily 1 isoform 13 [Hom... 37 0.009 gi|148743778 chemokine-like factor superfamily 1 isoform 14 [Hom... 36 0.016 gi|169171852 PREDICTED: similar to vacuolar protein sorting 35 [... 36 0.021 gi|17999541 vacuolar protein sorting 35 [Homo sapiens] 36 0.021 gi|31563392 chemokine-like factor superfamily 1 isoform 1 [Homo ... 35 0.046 gi|13273315 homeobox B4 [Homo sapiens] 34 0.079 gi|31563394 chemokine-like factor superfamily 1 isoform 2 [Homo ... 34 0.079 gi|104876423 heparan sulfate D-glucosaminyl 3-O-sulfotransferase... 32 0.23 gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 32 0.39 gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 31 0.51 gi|133922582 zinc finger protein 358 [Homo sapiens] 31 0.51 gi|40807447 papillary renal cell carcinoma translocation-associa... 31 0.67 gi|40807450 papillary renal cell carcinoma translocation-associa... 31 0.67 gi|239757467 PREDICTED: hypothetical protein [Homo sapiens] 30 0.88 gi|239751993 PREDICTED: hypothetical protein [Homo sapiens] 30 0.88 gi|239746476 PREDICTED: hypothetical protein [Homo sapiens] 30 0.88 gi|52485606 formin-like 2 [Homo sapiens] 30 0.88 gi|112382214 SEC24 (S. cerevisiae) homolog B isoform b [Homo sap... 30 0.88 >gi|115385972 chemokine-like factor superfamily 3 [Homo sapiens] Length = 182 Score = 371 bits (952), Expect = e-103 Identities = 182/182 (100%), Positives = 182/182 (100%) Query: 1 MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV 60 MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV Sbjct: 1 MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV 60 Query: 61 ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA 120 ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA Sbjct: 61 ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA 120 Query: 121 IAKYSDGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQGDSADETTAHKTEEENSDSD 180 IAKYSDGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQGDSADETTAHKTEEENSDSD Sbjct: 121 IAKYSDGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQGDSADETTAHKTEEENSDSD 180 Query: 181 SD 182 SD Sbjct: 181 SD 182 >gi|32130528 chemokine-like factor superfamily 3 [Homo sapiens] Length = 182 Score = 371 bits (952), Expect = e-103 Identities = 182/182 (100%), Positives = 182/182 (100%) Query: 1 MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV 60 MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV Sbjct: 1 MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV 60 Query: 61 ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA 120 ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA Sbjct: 61 ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA 120 Query: 121 IAKYSDGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQGDSADETTAHKTEEENSDSD 180 IAKYSDGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQGDSADETTAHKTEEENSDSD Sbjct: 121 IAKYSDGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQGDSADETTAHKTEEENSDSD 180 Query: 181 SD 182 SD Sbjct: 181 SD 182 >gi|32130526 chemokine-like factor superfamily 3 [Homo sapiens] Length = 182 Score = 371 bits (952), Expect = e-103 Identities = 182/182 (100%), Positives = 182/182 (100%) Query: 1 MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV 60 MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV Sbjct: 1 MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV 60 Query: 61 ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA 120 ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA Sbjct: 61 ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA 120 Query: 121 IAKYSDGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQGDSADETTAHKTEEENSDSD 180 IAKYSDGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQGDSADETTAHKTEEENSDSD Sbjct: 121 IAKYSDGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQGDSADETTAHKTEEENSDSD 180 Query: 181 SD 182 SD Sbjct: 181 SD 182 >gi|21389401 chemokine-like factor superfamily 3 [Homo sapiens] Length = 182 Score = 371 bits (952), Expect = e-103 Identities = 182/182 (100%), Positives = 182/182 (100%) Query: 1 MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV 60 MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV Sbjct: 1 MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV 60 Query: 61 ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA 120 ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA Sbjct: 61 ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA 120 Query: 121 IAKYSDGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQGDSADETTAHKTEEENSDSD 180 IAKYSDGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQGDSADETTAHKTEEENSDSD Sbjct: 121 IAKYSDGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQGDSADETTAHKTEEENSDSD 180 Query: 181 SD 182 SD Sbjct: 181 SD 182 >gi|19923993 chemokine-like factor superfamily 5 isoform a [Homo sapiens] Length = 156 Score = 98.2 bits (243), Expect = 3e-21 Identities = 59/140 (42%), Positives = 81/140 (57%), Gaps = 3/140 (2%) Query: 24 VPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYVASSASAFLTAPLLEFLLALYFLF 83 V L+ +AFL S KG LL E L+ I FIC+ AS SA++ A LLEF + L FLF Sbjct: 17 VAELQGFAVDKAFLTSHKGILLETELALTLIIFICFTAS-ISAYMAAALLEFFITLAFLF 75 Query: 84 ADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITAIAKYSDGASKAAGVFGFFATIVF 143 A Q ++ + WP +DFLRCV+A +I+ +S A+ DGA+ AA VFG +F Sbjct: 76 LYATQYYQRFDRINWPCLDFLRCVSAIIIFLVVSFAAVTS-RDGAAIAAFVFGIILVSIF 134 Query: 144 ATDFYLIF-NDVAKFLKQGD 162 A D + I+ ++A QGD Sbjct: 135 AYDAFKIYRTEMAPGASQGD 154 >gi|4505893 proteolipid protein 2 (colonic epithelium-enriched) [Homo sapiens] Length = 152 Score = 64.7 bits (156), Expect = 4e-11 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 1/111 (0%) Query: 41 KGRLLLAESGLSFITFICYVASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPM 100 KG LL AE L + IC+ AS+ + + ++E +LA F L+ K + WP Sbjct: 24 KGILLFAEIILCLVILICFSASTPG-YSSLSVIEMILAAIFFVVYMCDLHTKIPFINWPW 82 Query: 101 MDFLRCVTAALIYFAISITAIAKYSDGASKAAGVFGFFATIVFATDFYLIF 151 DF R + AA++Y SI + + + + AGV G AT +F D Y+ F Sbjct: 83 SDFFRTLIAAILYLITSIVVLVERGNHSKIVAGVLGLIATCLFGYDAYVTF 133 >gi|82546841 chemokine-like factor superfamily 5 isoform c [Homo sapiens] Length = 125 Score = 58.5 bits (140), Expect = 3e-09 Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 24 VPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYVASSASAFLTAPLLEFLLALYFLF 83 V L+ +AFL S KG LL E L+ I FIC+ AS SA++ A LLEF + L FLF Sbjct: 17 VAELQGFAVDKAFLTSHKGILLETELALTLIIFICFTAS-ISAYMAAALLEFFITLAFLF 75 Query: 84 ADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISI 118 A Q ++ + WP + F + + Y A I Sbjct: 76 LYATQYYQRFDRINWPCLVFGIILVSIFAYDAFKI 110 >gi|31657096 chemokine-like factor superfamily 4 isoform 2 [Homo sapiens] Length = 208 Score = 47.8 bits (112), Expect = 5e-06 Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 15/178 (8%) Query: 10 PDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYVASSASA--- 66 P EP R GL L +L GRL +A+ L+ I FIC A + Sbjct: 29 PTTEPVSQRR------GLAGLRCDPDYLRGALGRLKVAQVILALIAFICIETIMACSPCE 82 Query: 67 ----FLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISIT-AI 121 F F++ L ++ L+ + + W + D + +A ++F SI A Sbjct: 83 GLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQINWNLTDLVNTGLSAFLFFIASIVLAA 142 Query: 122 AKYSDGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQGDSADETTAHKTEEENSDS 179 + GA AA +FGF AT +A + +L ++Q + D A +TE + DS Sbjct: 143 LNHRAGAEIAAVIFGFLATAAYAVNTFLAVQKWRVSVRQQSTNDYIRA-RTESRDVDS 199 >gi|30520333 chemokine-like factor superfamily 4 isoform 1 [Homo sapiens] Length = 234 Score = 47.8 bits (112), Expect = 5e-06 Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 15/178 (8%) Query: 10 PDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYVASSASA--- 66 P EP R GL L +L GRL +A+ L+ I FIC A + Sbjct: 29 PTTEPVSQRR------GLAGLRCDPDYLRGALGRLKVAQVILALIAFICIETIMACSPCE 82 Query: 67 ----FLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISIT-AI 121 F F++ L ++ L+ + + W + D + +A ++F SI A Sbjct: 83 GLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQINWNLTDLVNTGLSAFLFFIASIVLAA 142 Query: 122 AKYSDGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQGDSADETTAHKTEEENSDS 179 + GA AA +FGF AT +A + +L ++Q + D A +TE + DS Sbjct: 143 LNHRAGAEIAAVIFGFLATAAYAVNTFLAVQKWRVSVRQQSTNDYIRA-RTESRDVDS 199 >gi|8393581 chemokine-like factor isoform a [Homo sapiens] Length = 152 Score = 42.4 bits (98), Expect = 2e-04 Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 1/119 (0%) Query: 34 RAFLCSLKGRLLLAESGLSFITFICYVASSA-SAFLTAPLLEFLLALYFLFADAMQLNDK 92 R F S+KG + + L+ + ++ + A ++ E + L+F+ ++L+ Sbjct: 11 RPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFILLYVLRLDRL 70 Query: 93 WQGLCWPMMDFLRCVTAALIYFAISITAIAKYSDGASKAAGVFGFFATIVFATDFYLIF 151 + L WP++D + + + +S+ A+ + + GVF + D LI+ Sbjct: 71 MKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGVFALVTAVCCLADGALIY 129 >gi|8923370 CKLF-like MARVEL transmembrane domain containing 6 [Homo sapiens] Length = 183 Score = 40.0 bits (92), Expect = 0.001 Identities = 43/157 (27%), Positives = 59/157 (37%), Gaps = 28/157 (17%) Query: 6 PDPDPDPEPAGGSRPGPA--------------VPGLRALLPARAFLCSLKGRLLLAESGL 51 P + DP PA G R G A + GL+ LL AF+C GL Sbjct: 9 PTTEEDPGPARGPRSGLAAYFFMGRLPLLRRVLKGLQLLLSLLAFICEEVVSQCTLCGGL 68 Query: 52 SFITFICYVASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAAL 111 F F+ S SAFL L+L L ++ DF + Sbjct: 69 YFFEFV-----SCSAFL--------LSLLILIVYCTPFYERVDTTKVKSSDFYITLGTGC 115 Query: 112 IYFAISITAIAKYS-DGASKAAGVFGFFATIVFATDF 147 ++ SI ++ + A AA VFGF A+ +F DF Sbjct: 116 VFLLASIIFVSTHDRTSAEIAAIVFGFIASFMFLLDF 152 >gi|93141024 chemokine-like factor isoform e [Homo sapiens] Length = 113 Score = 37.4 bits (85), Expect = 0.007 Identities = 19/103 (18%), Positives = 47/103 (45%), Gaps = 1/103 (0%) Query: 34 RAFLCSLKGRLLLAESGLSFITFICYVASSA-SAFLTAPLLEFLLALYFLFADAMQLNDK 92 R F S+KG + + L+ + ++ + A ++ E + L+F+ ++L+ Sbjct: 11 RPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFILLYVLRLDRL 70 Query: 93 WQGLCWPMMDFLRCVTAALIYFAISITAIAKYSDGASKAAGVF 135 + L WP++D + + + +S+ A+ + + G+F Sbjct: 71 MKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGLF 113 >gi|148743783 chemokine-like factor superfamily 1 isoform 13 [Homo sapiens] Length = 286 Score = 37.0 bits (84), Expect = 0.009 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 2/129 (1%) Query: 34 RAFLCSLKGRLLLAESGLSFITFICYVASSAS-AFLTAPLLEFLLALYFLFADAMQLNDK 92 + F S G L + L C++ + A+ +F+T LE + ++F+ + L+ Sbjct: 129 KRFSFSPTGMLKILRLSLILGALACFIITQANESFITITSLEICIVVFFILIYVLTLHHL 188 Query: 93 WQGLCWPMMDFLRCVTAALIYFAISITAI-AKYSDGASKAAGVFGFFATIVFATDFYLIF 151 L WP++D + A+ ++I A+ K G A IV D +++ Sbjct: 189 LTYLHWPLLDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSLCLTAVIVCCIDAFVVT 248 Query: 152 NDVAKFLKQ 160 + LK+ Sbjct: 249 TKMRTNLKR 257 >gi|148743778 chemokine-like factor superfamily 1 isoform 14 [Homo sapiens] Length = 231 Score = 36.2 bits (82), Expect = 0.016 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 1/89 (1%) Query: 34 RAFLCSLKGRLLLAESGLSFITFICYVASSAS-AFLTAPLLEFLLALYFLFADAMQLNDK 92 + F S G L + L C++ + A+ +F+T LE + ++F+ + L+ Sbjct: 129 KRFSFSPTGMLKILRLSLILGALACFIITQANESFITITSLEICIVVFFILIYVLTLHHL 188 Query: 93 WQGLCWPMMDFLRCVTAALIYFAISITAI 121 L WP++D + A+ ++I A+ Sbjct: 189 LTYLHWPLLDLTNSIITAVFLSVVAILAM 217 >gi|169171852 PREDICTED: similar to vacuolar protein sorting 35 [Homo sapiens] Length = 363 Score = 35.8 bits (81), Expect = 0.021 Identities = 35/137 (25%), Positives = 53/137 (38%), Gaps = 14/137 (10%) Query: 3 PPDPDPDPDPEPAGGSRP--GPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV 60 P P DPDPE + G + LR+ P + +L R G I F Sbjct: 39 PDQPVEDPDPEDFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTL-- 96 Query: 61 ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA 120 PL+ L F + + +++DKW+ C + F +ALI ++ Sbjct: 97 ---------PPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELP 147 Query: 121 IAKYSDGASKAAGVFGF 137 + + GA AAG GF Sbjct: 148 LRLFLQGA-LAAGEIGF 163 >gi|17999541 vacuolar protein sorting 35 [Homo sapiens] Length = 796 Score = 35.8 bits (81), Expect = 0.021 Identities = 35/137 (25%), Positives = 53/137 (38%), Gaps = 14/137 (10%) Query: 3 PPDPDPDPDPEPAGGSRP--GPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV 60 P P DPDPE + G + LR+ P + +L R G I F Sbjct: 472 PDQPVEDPDPEDFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTL-- 529 Query: 61 ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA 120 PL+ L F + + +++DKW+ C + F +ALI ++ Sbjct: 530 ---------PPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELP 580 Query: 121 IAKYSDGASKAAGVFGF 137 + + GA AAG GF Sbjct: 581 LRLFLQGA-LAAGEIGF 596 >gi|31563392 chemokine-like factor superfamily 1 isoform 1 [Homo sapiens] Length = 169 Score = 34.7 bits (78), Expect = 0.046 Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 2/105 (1%) Query: 58 CYVASSAS-AFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAI 116 C++ + A+ +F+T LE + ++F+ + L+ L WP++D + A+ + Sbjct: 36 CFIITQANESFITITSLEICIVVFFILIYVLTLHHLLTYLHWPLLDLTNSIITAVFLSVV 95 Query: 117 SITAI-AKYSDGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQ 160 +I A+ K G A IV D +++ + LK+ Sbjct: 96 AILAMQEKKRRHLLYVGGSLCLTAVIVCCIDAFVVTTKMRTNLKR 140 >gi|13273315 homeobox B4 [Homo sapiens] Length = 251 Score = 33.9 bits (76), Expect = 0.079 Identities = 17/36 (47%), Positives = 17/36 (47%) Query: 3 PPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLC 38 PP P P P P P G S PA P ALLP C Sbjct: 75 PPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRC 110 >gi|31563394 chemokine-like factor superfamily 1 isoform 2 [Homo sapiens] Length = 114 Score = 33.9 bits (76), Expect = 0.079 Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 58 CYVASSAS-AFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAI 116 C++ + A+ +F+T LE + ++F+ + L+ L WP++D + A+ + Sbjct: 36 CFIITQANESFITITSLEICIVVFFILIYVLTLHHLLTYLHWPLLDLTNSIITAVFLSVV 95 Query: 117 SITAI 121 +I A+ Sbjct: 96 AILAM 100 >gi|104876423 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 4 [Homo sapiens] Length = 456 Score = 32.3 bits (72), Expect = 0.23 Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 17/74 (22%) Query: 2 WPPDPDPDPDPEP-AGGSRPGPAVPGLRALLPAR--AFLCSLKGRLLLAESGLSFITFIC 58 WP P P P P P A PG + G PAR F+C+L LS +T++C Sbjct: 4 WPAPPPPPPPPPPLAAPPPPGASAKG----PPARKLLFMCTL---------SLS-VTYLC 49 Query: 59 YVASSASAFLTAPL 72 Y S L PL Sbjct: 50 YSLLGGSGSLQFPL 63 >gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] Length = 663 Score = 31.6 bits (70), Expect = 0.39 Identities = 11/18 (61%), Positives = 13/18 (72%) Query: 3 PPDPDPDPDPEPAGGSRP 20 PP P P P P PAGG++P Sbjct: 413 PPPPPPPPPPPPAGGAKP 430 >gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] Length = 502 Score = 31.2 bits (69), Expect = 0.51 Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Query: 3 PPDPDPDPDPEPAGGSRPGPAVPGL-RALLPA 33 PP P P P P P S GPA P L AL+PA Sbjct: 391 PPMPPPPPPPPPPPSSGNGPAPPPLPPALVPA 422 >gi|133922582 zinc finger protein 358 [Homo sapiens] Length = 568 Score = 31.2 bits (69), Expect = 0.51 Identities = 14/30 (46%), Positives = 16/30 (53%) Query: 4 PDPDPDPDPEPAGGSRPGPAVPGLRALLPA 33 PDPDP P P+P S P P P + PA Sbjct: 518 PDPDPVPSPDPNPVSCPDPCSPTRGTVSPA 547 >gi|40807447 papillary renal cell carcinoma translocation-associated gene product isoform 1 [Homo sapiens] Length = 491 Score = 30.8 bits (68), Expect = 0.67 Identities = 14/31 (45%), Positives = 19/31 (61%) Query: 3 PPDPDPDPDPEPAGGSRPGPAVPGLRALLPA 33 P + +P+P+ E A GPA+ GL A LPA Sbjct: 14 PDEAEPEPEEEEAVAPTSGPALGGLFASLPA 44 >gi|40807450 papillary renal cell carcinoma translocation-associated gene product isoform 2 [Homo sapiens] Length = 459 Score = 30.8 bits (68), Expect = 0.67 Identities = 14/31 (45%), Positives = 19/31 (61%) Query: 3 PPDPDPDPDPEPAGGSRPGPAVPGLRALLPA 33 P + +P+P+ E A GPA+ GL A LPA Sbjct: 14 PDEAEPEPEEEEAVAPTSGPALGGLFASLPA 44 >gi|239757467 PREDICTED: hypothetical protein [Homo sapiens] Length = 278 Score = 30.4 bits (67), Expect = 0.88 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 6/41 (14%) Query: 4 PDPDPDPDPEPAGGSR------PGPAVPGLRALLPARAFLC 38 P P P P P PA G R PA+PG +L + +C Sbjct: 140 PSPSPSPSPSPARGGRWTTCASSSPALPGTDGVLRRMSPVC 180 >gi|239751993 PREDICTED: hypothetical protein [Homo sapiens] Length = 278 Score = 30.4 bits (67), Expect = 0.88 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 6/41 (14%) Query: 4 PDPDPDPDPEPAGGSR------PGPAVPGLRALLPARAFLC 38 P P P P P PA G R PA+PG +L + +C Sbjct: 140 PSPSPSPSPSPARGGRWTTCASSSPALPGTDGVLRRMSPVC 180 >gi|239746476 PREDICTED: hypothetical protein [Homo sapiens] Length = 278 Score = 30.4 bits (67), Expect = 0.88 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 6/41 (14%) Query: 4 PDPDPDPDPEPAGGSR------PGPAVPGLRALLPARAFLC 38 P P P P P PA G R PA+PG +L + +C Sbjct: 140 PSPSPSPSPSPARGGRWTTCASSSPALPGTDGVLRRMSPVC 180 >gi|52485606 formin-like 2 [Homo sapiens] Length = 1092 Score = 30.4 bits (67), Expect = 0.88 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 5/57 (8%) Query: 3 PPDPDPDPDPEPAGGSRPGPA-----VPGLRALLPARAFLCSLKGRLLLAESGLSFI 54 PP P P P P P PGPA P L LP+ L ++ SGL+ + Sbjct: 558 PPPPPPPPPPPPPPPPLPGPAAETVPAPPLAPPLPSAPPLPGTSSPTVVFNSGLAAV 614 Score = 28.1 bits (61), Expect = 4.4 Identities = 11/24 (45%), Positives = 12/24 (50%) Query: 3 PPDPDPDPDPEPAGGSRPGPAVPG 26 PP P P P P P P P +PG Sbjct: 553 PPPPPPPPPPPPPPPPPPPPPLPG 576 >gi|112382214 SEC24 (S. cerevisiae) homolog B isoform b [Homo sapiens] Length = 1233 Score = 30.4 bits (67), Expect = 0.88 Identities = 12/22 (54%), Positives = 13/22 (59%) Query: 4 PDPDPDPDPEPAGGSRPGPAVP 25 P P+PDP PA S P P VP Sbjct: 394 PAPEPDPASAPAPASAPAPVVP 415 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.323 0.138 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,603,560 Number of Sequences: 37866 Number of extensions: 372821 Number of successful extensions: 4576 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 97 Number of HSP's successfully gapped in prelim test: 75 Number of HSP's that attempted gapping in prelim test: 3955 Number of HSP's gapped (non-prelim): 529 length of query: 182 length of database: 18,247,518 effective HSP length: 96 effective length of query: 86 effective length of database: 14,612,382 effective search space: 1256664852 effective search space used: 1256664852 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.