Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 31657123
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31657123 Hermansky-Pudlak syndrome 5 isoform a [Homo
sapiens]
(1129 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31657123 Hermansky-Pudlak syndrome 5 isoform a [Homo sapiens] 2267 0.0
gi|31657125 Hermansky-Pudlak syndrome 5 isoform b [Homo sapiens] 2039 0.0
gi|31657127 Hermansky-Pudlak syndrome 5 isoform b [Homo sapiens] 2039 0.0
gi|7662058 tectonin beta-propeller repeat containing 2 [Homo sap... 106 1e-22
gi|94400925 synaptonemal complex protein 2-like [Homo sapiens] 41 0.006
gi|29789373 hypothetical protein LOC92689 [Homo sapiens] 40 0.016
gi|65787364 coronin, actin binding protein, 1B [Homo sapiens] 39 0.021
gi|14149734 coronin, actin binding protein, 1B [Homo sapiens] 39 0.021
gi|5902134 coronin, actin binding protein, 1A [Homo sapiens] 39 0.036
gi|217330601 SP140 nuclear body protein isoform 1 [Homo sapiens] 37 0.11
gi|225543474 myotubularin related protein 7 [Homo sapiens] 36 0.18
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 36 0.18
gi|189217915 syntaxin binding protein 5 (tomosyn) isoform b [Hom... 36 0.18
gi|189217897 syntaxin binding protein 5 (tomosyn) isoform a [Hom... 36 0.18
gi|149363700 syntaxin binding protein 5-like [Homo sapiens] 36 0.24
gi|156104891 general transcription factor IIF, polypeptide 1, 74... 35 0.31
gi|14149987 WD repeat domain 24 [Homo sapiens] 35 0.31
gi|182515228 mouse Mdm1 nuclear protein homolog isoform 1 [Homo ... 35 0.31
gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens] 35 0.31
gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens] 35 0.31
gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo ... 35 0.40
gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo ... 35 0.40
gi|4507241 structure specific recognition protein 1 [Homo sapiens] 35 0.40
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 35 0.53
gi|154759293 cysteine-rich hydrophobic domain 1 [Homo sapiens] 34 0.69
gi|134304846 Rb1-inducible coiled coil protein 1 isoform 2 [Homo... 33 1.2
gi|134304842 Rb1-inducible coiled coil protein 1 isoform 1 [Homo... 33 1.2
gi|75677376 coiled-coil domain containing 62 isoform b [Homo sap... 33 1.2
gi|30348972 coiled-coil domain containing 62 isoform a [Homo sap... 33 1.2
gi|56550086 WD repeat and HMG-box DNA binding protein 1 isoform ... 33 1.2
>gi|31657123 Hermansky-Pudlak syndrome 5 isoform a [Homo sapiens]
Length = 1129
Score = 2267 bits (5874), Expect = 0.0
Identities = 1129/1129 (100%), Positives = 1129/1129 (100%)
Query: 1 MAFVPVIPESYSHVLAEFESLDPLLSALRLDSSRLKCTSIAVSRKWLALGSSGGGLHLIQ 60
MAFVPVIPESYSHVLAEFESLDPLLSALRLDSSRLKCTSIAVSRKWLALGSSGGGLHLIQ
Sbjct: 1 MAFVPVIPESYSHVLAEFESLDPLLSALRLDSSRLKCTSIAVSRKWLALGSSGGGLHLIQ 60
Query: 61 KEGWKHRLFLSHREGAISQVACCLHDDDYVAVATSQGLVVVWELNQERRGKPEQMYVSSE 120
KEGWKHRLFLSHREGAISQVACCLHDDDYVAVATSQGLVVVWELNQERRGKPEQMYVSSE
Sbjct: 61 KEGWKHRLFLSHREGAISQVACCLHDDDYVAVATSQGLVVVWELNQERRGKPEQMYVSSE 120
Query: 121 HKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITTVDSCVV 180
HKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITTVDSCVV
Sbjct: 121 HKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITTVDSCVV 180
Query: 181 QLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERDGEYGACFFPGRCSGGQQPLIYCAR 240
QLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERDGEYGACFFPGRCSGGQQPLIYCAR
Sbjct: 181 QLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERDGEYGACFFPGRCSGGQQPLIYCAR 240
Query: 241 PGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPKLLHLSE 300
PGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPKLLHLSE
Sbjct: 241 PGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPKLLHLSE 300
Query: 301 HCVLTWTERGIYIFIPQNVQVLLWSEVKDIQDVAVCRNELFCLHLNGKVSHLSLISVERC 360
HCVLTWTERGIYIFIPQNVQVLLWSEVKDIQDVAVCRNELFCLHLNGKVSHLSLISVERC
Sbjct: 301 HCVLTWTERGIYIFIPQNVQVLLWSEVKDIQDVAVCRNELFCLHLNGKVSHLSLISVERC 360
Query: 361 VERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLISQLEEL 420
VERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLISQLEEL
Sbjct: 361 VERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLISQLEEL 420
Query: 421 ILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQTLSEDER 480
ILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQTLSEDER
Sbjct: 421 ILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQTLSEDER 480
Query: 481 FKEFTSQQEEDLPDQCCGSHGNEDNVSHAPVMFETDKNETFLPFGIPLPFRSPSPLVSLQ 540
FKEFTSQQEEDLPDQCCGSHGNEDNVSHAPVMFETDKNETFLPFGIPLPFRSPSPLVSLQ
Sbjct: 481 FKEFTSQQEEDLPDQCCGSHGNEDNVSHAPVMFETDKNETFLPFGIPLPFRSPSPLVSLQ 540
Query: 541 AVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDTEEEKEV 600
AVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDTEEEKEV
Sbjct: 541 AVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDTEEEKEV 600
Query: 601 TSPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMKDFSGVS 660
TSPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMKDFSGVS
Sbjct: 601 TSPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMKDFSGVS 660
Query: 661 DTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPRESLDDL 720
DTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPRESLDDL
Sbjct: 661 DTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPRESLDDL 720
Query: 721 FQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILACQFLKK 780
FQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILACQFLKK
Sbjct: 721 FQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILACQFLKK 780
Query: 781 YFFLLNLKRAKESIKLSYSNSPSVWDTFIEGLKEMASSNPVYMEMEKGDLPTRLKLLDDE 840
YFFLLNLKRAKESIKLSYSNSPSVWDTFIEGLKEMASSNPVYMEMEKGDLPTRLKLLDDE
Sbjct: 781 YFFLLNLKRAKESIKLSYSNSPSVWDTFIEGLKEMASSNPVYMEMEKGDLPTRLKLLDDE 840
Query: 841 VPFDSPLLVVYATRLYEKFGESALRSLIKFFPSILPSDIIQLCHHHPAEFLAYLDSLVKS 900
VPFDSPLLVVYATRLYEKFGESALRSLIKFFPSILPSDIIQLCHHHPAEFLAYLDSLVKS
Sbjct: 841 VPFDSPLLVVYATRLYEKFGESALRSLIKFFPSILPSDIIQLCHHHPAEFLAYLDSLVKS 900
Query: 901 RPEDQRSSFLESLLQPESLRLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSWGYSQLI 960
RPEDQRSSFLESLLQPESLRLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSWGYSQLI
Sbjct: 901 RPEDQRSSFLESLLQPESLRLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSWGYSQLI 960
Query: 961 LHLIKLPADFITKEKMTDICRSCGFWPGYLILCLELERRREAFTNIVYLNDMSLMEGDNG 1020
LHLIKLPADFITKEKMTDICRSCGFWPGYLILCLELERRREAFTNIVYLNDMSLMEGDNG
Sbjct: 961 LHLIKLPADFITKEKMTDICRSCGFWPGYLILCLELERRREAFTNIVYLNDMSLMEGDNG 1020
Query: 1021 WIPETVEEWKLLLHLIQSKSTRPAPQESLNGSLSDGPSPINVENVALLLAKAMGPDRAWS 1080
WIPETVEEWKLLLHLIQSKSTRPAPQESLNGSLSDGPSPINVENVALLLAKAMGPDRAWS
Sbjct: 1021 WIPETVEEWKLLLHLIQSKSTRPAPQESLNGSLSDGPSPINVENVALLLAKAMGPDRAWS 1080
Query: 1081 LLQECGLALELSEKFTRTCDILRIAEKRQRALIQSMLEKCDRFLWSQQA 1129
LLQECGLALELSEKFTRTCDILRIAEKRQRALIQSMLEKCDRFLWSQQA
Sbjct: 1081 LLQECGLALELSEKFTRTCDILRIAEKRQRALIQSMLEKCDRFLWSQQA 1129
>gi|31657125 Hermansky-Pudlak syndrome 5 isoform b [Homo sapiens]
Length = 1015
Score = 2039 bits (5282), Expect = 0.0
Identities = 1015/1015 (100%), Positives = 1015/1015 (100%)
Query: 115 MYVSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITT 174
MYVSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITT
Sbjct: 1 MYVSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITT 60
Query: 175 VDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERDGEYGACFFPGRCSGGQQP 234
VDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERDGEYGACFFPGRCSGGQQP
Sbjct: 61 VDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERDGEYGACFFPGRCSGGQQP 120
Query: 235 LIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPK 294
LIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPK
Sbjct: 121 LIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPK 180
Query: 295 LLHLSEHCVLTWTERGIYIFIPQNVQVLLWSEVKDIQDVAVCRNELFCLHLNGKVSHLSL 354
LLHLSEHCVLTWTERGIYIFIPQNVQVLLWSEVKDIQDVAVCRNELFCLHLNGKVSHLSL
Sbjct: 181 LLHLSEHCVLTWTERGIYIFIPQNVQVLLWSEVKDIQDVAVCRNELFCLHLNGKVSHLSL 240
Query: 355 ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI 414
ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI
Sbjct: 241 ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI 300
Query: 415 SQLEELILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQT 474
SQLEELILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQT
Sbjct: 301 SQLEELILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQT 360
Query: 475 LSEDERFKEFTSQQEEDLPDQCCGSHGNEDNVSHAPVMFETDKNETFLPFGIPLPFRSPS 534
LSEDERFKEFTSQQEEDLPDQCCGSHGNEDNVSHAPVMFETDKNETFLPFGIPLPFRSPS
Sbjct: 361 LSEDERFKEFTSQQEEDLPDQCCGSHGNEDNVSHAPVMFETDKNETFLPFGIPLPFRSPS 420
Query: 535 PLVSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDT 594
PLVSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDT
Sbjct: 421 PLVSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDT 480
Query: 595 EEEKEVTSPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMK 654
EEEKEVTSPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMK
Sbjct: 481 EEEKEVTSPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMK 540
Query: 655 DFSGVSDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPR 714
DFSGVSDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPR
Sbjct: 541 DFSGVSDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPR 600
Query: 715 ESLDDLFQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILA 774
ESLDDLFQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILA
Sbjct: 601 ESLDDLFQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILA 660
Query: 775 CQFLKKYFFLLNLKRAKESIKLSYSNSPSVWDTFIEGLKEMASSNPVYMEMEKGDLPTRL 834
CQFLKKYFFLLNLKRAKESIKLSYSNSPSVWDTFIEGLKEMASSNPVYMEMEKGDLPTRL
Sbjct: 661 CQFLKKYFFLLNLKRAKESIKLSYSNSPSVWDTFIEGLKEMASSNPVYMEMEKGDLPTRL 720
Query: 835 KLLDDEVPFDSPLLVVYATRLYEKFGESALRSLIKFFPSILPSDIIQLCHHHPAEFLAYL 894
KLLDDEVPFDSPLLVVYATRLYEKFGESALRSLIKFFPSILPSDIIQLCHHHPAEFLAYL
Sbjct: 721 KLLDDEVPFDSPLLVVYATRLYEKFGESALRSLIKFFPSILPSDIIQLCHHHPAEFLAYL 780
Query: 895 DSLVKSRPEDQRSSFLESLLQPESLRLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSW 954
DSLVKSRPEDQRSSFLESLLQPESLRLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSW
Sbjct: 781 DSLVKSRPEDQRSSFLESLLQPESLRLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSW 840
Query: 955 GYSQLILHLIKLPADFITKEKMTDICRSCGFWPGYLILCLELERRREAFTNIVYLNDMSL 1014
GYSQLILHLIKLPADFITKEKMTDICRSCGFWPGYLILCLELERRREAFTNIVYLNDMSL
Sbjct: 841 GYSQLILHLIKLPADFITKEKMTDICRSCGFWPGYLILCLELERRREAFTNIVYLNDMSL 900
Query: 1015 MEGDNGWIPETVEEWKLLLHLIQSKSTRPAPQESLNGSLSDGPSPINVENVALLLAKAMG 1074
MEGDNGWIPETVEEWKLLLHLIQSKSTRPAPQESLNGSLSDGPSPINVENVALLLAKAMG
Sbjct: 901 MEGDNGWIPETVEEWKLLLHLIQSKSTRPAPQESLNGSLSDGPSPINVENVALLLAKAMG 960
Query: 1075 PDRAWSLLQECGLALELSEKFTRTCDILRIAEKRQRALIQSMLEKCDRFLWSQQA 1129
PDRAWSLLQECGLALELSEKFTRTCDILRIAEKRQRALIQSMLEKCDRFLWSQQA
Sbjct: 961 PDRAWSLLQECGLALELSEKFTRTCDILRIAEKRQRALIQSMLEKCDRFLWSQQA 1015
>gi|31657127 Hermansky-Pudlak syndrome 5 isoform b [Homo sapiens]
Length = 1015
Score = 2039 bits (5282), Expect = 0.0
Identities = 1015/1015 (100%), Positives = 1015/1015 (100%)
Query: 115 MYVSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITT 174
MYVSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITT
Sbjct: 1 MYVSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITT 60
Query: 175 VDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERDGEYGACFFPGRCSGGQQP 234
VDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERDGEYGACFFPGRCSGGQQP
Sbjct: 61 VDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERDGEYGACFFPGRCSGGQQP 120
Query: 235 LIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPK 294
LIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPK
Sbjct: 121 LIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPK 180
Query: 295 LLHLSEHCVLTWTERGIYIFIPQNVQVLLWSEVKDIQDVAVCRNELFCLHLNGKVSHLSL 354
LLHLSEHCVLTWTERGIYIFIPQNVQVLLWSEVKDIQDVAVCRNELFCLHLNGKVSHLSL
Sbjct: 181 LLHLSEHCVLTWTERGIYIFIPQNVQVLLWSEVKDIQDVAVCRNELFCLHLNGKVSHLSL 240
Query: 355 ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI 414
ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI
Sbjct: 241 ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI 300
Query: 415 SQLEELILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQT 474
SQLEELILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQT
Sbjct: 301 SQLEELILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQT 360
Query: 475 LSEDERFKEFTSQQEEDLPDQCCGSHGNEDNVSHAPVMFETDKNETFLPFGIPLPFRSPS 534
LSEDERFKEFTSQQEEDLPDQCCGSHGNEDNVSHAPVMFETDKNETFLPFGIPLPFRSPS
Sbjct: 361 LSEDERFKEFTSQQEEDLPDQCCGSHGNEDNVSHAPVMFETDKNETFLPFGIPLPFRSPS 420
Query: 535 PLVSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDT 594
PLVSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDT
Sbjct: 421 PLVSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDT 480
Query: 595 EEEKEVTSPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMK 654
EEEKEVTSPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMK
Sbjct: 481 EEEKEVTSPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMK 540
Query: 655 DFSGVSDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPR 714
DFSGVSDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPR
Sbjct: 541 DFSGVSDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPR 600
Query: 715 ESLDDLFQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILA 774
ESLDDLFQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILA
Sbjct: 601 ESLDDLFQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILA 660
Query: 775 CQFLKKYFFLLNLKRAKESIKLSYSNSPSVWDTFIEGLKEMASSNPVYMEMEKGDLPTRL 834
CQFLKKYFFLLNLKRAKESIKLSYSNSPSVWDTFIEGLKEMASSNPVYMEMEKGDLPTRL
Sbjct: 661 CQFLKKYFFLLNLKRAKESIKLSYSNSPSVWDTFIEGLKEMASSNPVYMEMEKGDLPTRL 720
Query: 835 KLLDDEVPFDSPLLVVYATRLYEKFGESALRSLIKFFPSILPSDIIQLCHHHPAEFLAYL 894
KLLDDEVPFDSPLLVVYATRLYEKFGESALRSLIKFFPSILPSDIIQLCHHHPAEFLAYL
Sbjct: 721 KLLDDEVPFDSPLLVVYATRLYEKFGESALRSLIKFFPSILPSDIIQLCHHHPAEFLAYL 780
Query: 895 DSLVKSRPEDQRSSFLESLLQPESLRLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSW 954
DSLVKSRPEDQRSSFLESLLQPESLRLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSW
Sbjct: 781 DSLVKSRPEDQRSSFLESLLQPESLRLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSW 840
Query: 955 GYSQLILHLIKLPADFITKEKMTDICRSCGFWPGYLILCLELERRREAFTNIVYLNDMSL 1014
GYSQLILHLIKLPADFITKEKMTDICRSCGFWPGYLILCLELERRREAFTNIVYLNDMSL
Sbjct: 841 GYSQLILHLIKLPADFITKEKMTDICRSCGFWPGYLILCLELERRREAFTNIVYLNDMSL 900
Query: 1015 MEGDNGWIPETVEEWKLLLHLIQSKSTRPAPQESLNGSLSDGPSPINVENVALLLAKAMG 1074
MEGDNGWIPETVEEWKLLLHLIQSKSTRPAPQESLNGSLSDGPSPINVENVALLLAKAMG
Sbjct: 901 MEGDNGWIPETVEEWKLLLHLIQSKSTRPAPQESLNGSLSDGPSPINVENVALLLAKAMG 960
Query: 1075 PDRAWSLLQECGLALELSEKFTRTCDILRIAEKRQRALIQSMLEKCDRFLWSQQA 1129
PDRAWSLLQECGLALELSEKFTRTCDILRIAEKRQRALIQSMLEKCDRFLWSQQA
Sbjct: 961 PDRAWSLLQECGLALELSEKFTRTCDILRIAEKRQRALIQSMLEKCDRFLWSQQA 1015
>gi|7662058 tectonin beta-propeller repeat containing 2 [Homo
sapiens]
Length = 1411
Score = 106 bits (265), Expect = 1e-22
Identities = 96/327 (29%), Positives = 149/327 (45%), Gaps = 24/327 (7%)
Query: 38 TSIAVSRKWLALGSSGGGLHLIQKEGWKHRLF-LSHREGAISQVACCLHDDDYVAVATSQ 96
T++ + ++A+GSS G L+L + + R + + +I+ V DD VA T+
Sbjct: 39 TALDTNGDYIAVGSSIGMLYLYCRHLNQMRKYNFEGKTESITVVKLLSCFDDLVAAGTAS 98
Query: 97 GLVVVWELNQERRGKPEQMY---VSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLN 153
G V V++L G+ +Q+ V+ HK +TAL W +++F GD GK+ L+
Sbjct: 99 GRVAVFQLVSSLPGRNKQLRRFDVTGIHKNS-ITALAWSPNGMKLFSGDDKGKIVYSSLD 157
Query: 154 TSKQAKAAAAFVMFPVQTITTVDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNK 213
+ + Q + S +VQLDY LL+S+L RS L TE + +IG +
Sbjct: 158 LDQG--------LCNSQLVLEEPSSIVQLDYSQKVLLVSTLQRSLLFYTEEKSVRQIGTQ 209
Query: 214 ER--DGEYGACFFPGRCSGGQQPLIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPV 271
R G++GACF PG C L Y +RPG R+W+ + G V +T K + P
Sbjct: 210 PRKSTGKFGACFIPGLCKQSDLTL-YASRPGLRLWKADVHGTVQATFILKDAFAGGVKP- 267
Query: 272 ITLRSEPQYDHTAGSSQSLSFPKL----LHLSEHCVLTWTERGIYIFIPQNVQVLLWSEV 327
P+ + S SL L E VL+W E IY+ N + E
Sbjct: 268 --FELHPRLESPNSGSCSLPERHLGLVSCFFQEGWVLSWNEYSIYLLDTVNQATIAGLEG 325
Query: 328 K-DIQDVAVCRNELFCLHLNGKVSHLS 353
DI V+ NE+F L + + +S
Sbjct: 326 SGDIVSVSCTENEIFFLKGDRNIIRIS 352
>gi|94400925 synaptonemal complex protein 2-like [Homo sapiens]
Length = 812
Score = 41.2 bits (95), Expect = 0.006
Identities = 65/241 (26%), Positives = 100/241 (41%), Gaps = 39/241 (16%)
Query: 455 ISSRRGSQSDEDSCSLHSQTLSEDERFKEFTSQQE----EDLPDQCCGS-HGNEDNVSHA 509
ISS S+SD++ S E E+ +E T+ E ED D+C + H N+ S
Sbjct: 414 ISSELFSKSDKEDRESPSGLERETEQAEESTNMVEFMSAED--DRCLITLHLNDQ--SEP 469
Query: 510 PVMFETDKN---ETFLPFGIPLPFRSPSP-----LVSLQAVKESVSSFVRKTTEKIGTL- 560
PV+ E + + PFG+P + P L S S S + +K +L
Sbjct: 470 PVIGEPASDSHLQPVPPFGVPDFPQQPKSHYRKHLFSESNQDSSTSELSWTSNQKKKSLK 529
Query: 561 --------HTSPDLKVRPELRGDEQSC-EEDVSSDTCPKEEDTEEEKEVTSPPPEEDRFQ 611
T +L++ P S E+D + P E++ E+ TSP E +FQ
Sbjct: 530 SYSSRKKTRTRSNLRILPVFPPSSGSGHEKDQAKLLSPSEKEIPEQNNTTSPKTSEQKFQ 589
Query: 612 E----LKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMKDFSGVSDTDNSSM 667
+ L + T+LQDP L E SL+ H E K + S T+++S+
Sbjct: 590 DSFAFLTAEDSAQKTELQDPHSLSELSSLK--------HSEDEEKPKIVNQESLTESTSL 641
Query: 668 K 668
K
Sbjct: 642 K 642
>gi|29789373 hypothetical protein LOC92689 [Homo sapiens]
Length = 563
Score = 39.7 bits (91), Expect = 0.016
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 540 QAVKESVSSFVRKTTEKIGTLHTS--PDLKVRPELRGDEQSCEED---VSSDTCP--KEE 592
Q ++E F R TE + LH + PD K+ ++ EED VS D +EE
Sbjct: 356 QGLEEKGEEFARMLTELLFELHVAATPD-KLNKAMKRAHDWVEEDQTVVSVDVAKVSEEE 414
Query: 593 DTEEEKEVTSPPPEEDRFQELKVATAE 619
+EEKE S P+ED+ +E K T E
Sbjct: 415 TKKEEKEEKSQDPQEDKKEEKKTKTIE 441
>gi|65787364 coronin, actin binding protein, 1B [Homo sapiens]
Length = 489
Score = 39.3 bits (90), Expect = 0.021
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 9/140 (6%)
Query: 1 MAFVPVIPES-YSHVLAEFESLDPLLSALRLDSSRLKCTSIAVSRKWLAL--GSSGGGLH 57
M+F V+ +S + HV + D +R+ T AV+ K+LA+ +SGGG
Sbjct: 1 MSFRKVVRQSKFRHVFGQPVKNDQCYEDIRVSRVTWDSTFCAVNPKFLAVIVEASGGGAF 60
Query: 58 LI---QKEGWKHRLF--LSHREGAISQVACCLHDDDYVAVATSQGLVVVWELNQERRGKP 112
L+ K G + + + G + + C H+D+ +A + V+VW++ + P
Sbjct: 61 LVLPLSKTGRIDKAYPTVCGHTGPVLDIDWCPHNDEVIASGSEDCTVMVWQIPENGLTSP 120
Query: 113 -EQMYVSSEHKGRRVTALCW 131
+ V E +RV + W
Sbjct: 121 LTEPVVVLEGHTKRVGIIAW 140
>gi|14149734 coronin, actin binding protein, 1B [Homo sapiens]
Length = 489
Score = 39.3 bits (90), Expect = 0.021
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 9/140 (6%)
Query: 1 MAFVPVIPES-YSHVLAEFESLDPLLSALRLDSSRLKCTSIAVSRKWLAL--GSSGGGLH 57
M+F V+ +S + HV + D +R+ T AV+ K+LA+ +SGGG
Sbjct: 1 MSFRKVVRQSKFRHVFGQPVKNDQCYEDIRVSRVTWDSTFCAVNPKFLAVIVEASGGGAF 60
Query: 58 LI---QKEGWKHRLF--LSHREGAISQVACCLHDDDYVAVATSQGLVVVWELNQERRGKP 112
L+ K G + + + G + + C H+D+ +A + V+VW++ + P
Sbjct: 61 LVLPLSKTGRIDKAYPTVCGHTGPVLDIDWCPHNDEVIASGSEDCTVMVWQIPENGLTSP 120
Query: 113 -EQMYVSSEHKGRRVTALCW 131
+ V E +RV + W
Sbjct: 121 LTEPVVVLEGHTKRVGIIAW 140
>gi|5902134 coronin, actin binding protein, 1A [Homo sapiens]
Length = 461
Score = 38.5 bits (88), Expect = 0.036
Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 8/138 (5%)
Query: 11 YSHVLAEFESLDPLLSALRLDSSRLKCTSIAVSRKWLAL--GSSGGGLHLIQKEGWKHRL 68
+ HV + D +R+ + AV+ K++AL +SGGG L+ G R+
Sbjct: 11 FRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLGKTGRV 70
Query: 69 -----FLSHREGAISQVACCLHDDDYVAVATSQGLVVVWELNQERRGKP-EQMYVSSEHK 122
+ + +A C H+D+ +A + V+VWE+ P + V+ E
Sbjct: 71 DKNAPTVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLMLPLREPVVTLEGH 130
Query: 123 GRRVTALCWDTAILRVFV 140
+RV + W T V +
Sbjct: 131 TKRVGIVAWHTTAQNVLL 148
>gi|217330601 SP140 nuclear body protein isoform 1 [Homo sapiens]
Length = 867
Score = 37.0 bits (84), Expect = 0.11
Identities = 50/225 (22%), Positives = 83/225 (36%), Gaps = 12/225 (5%)
Query: 507 SHAPVMFETDKNETFLPFGIPLPFRSPSPLVSLQAVKESVSSFVRKTTEKIGTLHTSPDL 566
S +M D NE + F SP + ++ +++ E H D+
Sbjct: 116 SRINLMAYPDLNEIYRSFQNVCYEHSPLQMNNVNDLEDRPRLLPYGKQENSNACHEMDDI 175
Query: 567 KVRPELRGDEQSCEEDVSSDTC-----PKEEDTEEEKEVTSPPPEEDRFQELKVATAEAM 621
V E CE SS++C PK + E + S P +L + E
Sbjct: 176 AVPQEALSSSPRCEPGFSSESCEQLALPKAGGGDAE-DAPSLLPGGGVSCKLAIQIDEGE 234
Query: 622 TKLQDPLVLFESESLRMVLQEWLSHLEKTF--AMKDFSGVSDTDNSSMKLNQDVLLVNES 679
++ L+ +++E L + +T+ A + G + NS K NQD ES
Sbjct: 235 SEEMPKLLPYDTEVLE---SNGMIDAARTYSTAPGEKQGEEEGRNSPRKRNQDKEKYQES 291
Query: 680 KKGILDEDNEKEKRDSLGNEESVDKTACECVRSPRESLDDLFQIC 724
+G D++ K + NE +K C E DD ++C
Sbjct: 292 PEG-RDKETFDLKTPQVTNEGEPEKGLCLLPGEGEEGSDDCSEMC 335
>gi|225543474 myotubularin related protein 7 [Homo sapiens]
Length = 660
Score = 36.2 bits (82), Expect = 0.18
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 17/111 (15%)
Query: 414 ISQLEELILKFEPLDSACS---SRRSSISSHESFSILD----------SGIYRIISSRRG 460
+ LEE + K + + C+ S++S S H FS D SG + SR
Sbjct: 535 LEALEERLEKIQKVQLNCTKVKSKQSEPSKHSGFSTSDNSIANTPQDYSGNMKSFPSRSP 594
Query: 461 SQSDEDSCSLHSQ-TLSEDERFKEFTSQQEEDLPDQCCGSHGNEDNVSHAP 510
SQ DEDS + +Q L + S QE + D C S + HAP
Sbjct: 595 SQGDEDSALILTQDNLKSSDPDLSANSDQESGVEDLSCRSPSGGE---HAP 642
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 36.2 bits (82), Expect = 0.18
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 564 PDLKVRPELRGDEQSCEEDVSSDTCPKEEDTEEEKEVTSPPPEEDRFQELKVATAEAMTK 623
P V+P+ G E+ EE+ + ++E+ EEE+E EE+ +E + A A A+ +
Sbjct: 721 PLAPVQPQANGKEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEAAAAVALGE 780
Query: 624 LQDP 627
+ P
Sbjct: 781 VLGP 784
>gi|189217915 syntaxin binding protein 5 (tomosyn) isoform b [Homo
sapiens]
Length = 1151
Score = 36.2 bits (82), Expect = 0.18
Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 11/118 (9%)
Query: 2 AFVPVIPESYSHVLAEFESLDPLLSALRLDSSRLKCTSIAVSRKWLALGSSGGGLHLIQK 61
A V + + H+ + +L +L+ R+ + KWL +G+ G +H++
Sbjct: 112 ALVSALADDTLHLWNLRQKRPAILHSLKFCRERVTFCHLPFQSKWLYVGTERGNIHIVNV 171
Query: 62 EG---------WKHRLFLSHRE--GAISQVACCLHDDDYVAVATSQGLVVVWELNQER 108
E W + LS + G + ++ D+ + + G VV+W+L ++
Sbjct: 172 ESFTLSGYVIMWNKAIELSSKSHPGPVVHISDNPMDEGKLLIGFESGTVVLWDLKSKK 229
>gi|189217897 syntaxin binding protein 5 (tomosyn) isoform a [Homo
sapiens]
Length = 1115
Score = 36.2 bits (82), Expect = 0.18
Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 11/118 (9%)
Query: 2 AFVPVIPESYSHVLAEFESLDPLLSALRLDSSRLKCTSIAVSRKWLALGSSGGGLHLIQK 61
A V + + H+ + +L +L+ R+ + KWL +G+ G +H++
Sbjct: 112 ALVSALADDTLHLWNLRQKRPAILHSLKFCRERVTFCHLPFQSKWLYVGTERGNIHIVNV 171
Query: 62 EG---------WKHRLFLSHRE--GAISQVACCLHDDDYVAVATSQGLVVVWELNQER 108
E W + LS + G + ++ D+ + + G VV+W+L ++
Sbjct: 172 ESFTLSGYVIMWNKAIELSSKSHPGPVVHISDNPMDEGKLLIGFESGTVVLWDLKSKK 229
>gi|149363700 syntaxin binding protein 5-like [Homo sapiens]
Length = 1186
Score = 35.8 bits (81), Expect = 0.24
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 11/96 (11%)
Query: 24 LLSALRLDSSRLKCTSIAVSRKWLALGSSGGGLHLIQKEG---------WKHRLFLSHR- 73
+L +L+ + R+ + KWL +G+ G H++ E W + LS +
Sbjct: 147 ILHSLKFNRERITYCHLPFQSKWLYVGTERGNTHIVNIESFILSGYVIMWNKAIELSTKT 206
Query: 74 -EGAISQVACCLHDDDYVAVATSQGLVVVWELNQER 108
G + ++ D+ + + G VV W+L +R
Sbjct: 207 HPGPVVHLSDSPRDEGKLLIGYENGTVVFWDLKSKR 242
>gi|156104891 general transcription factor IIF, polypeptide 1, 74kDa
[Homo sapiens]
Length = 517
Score = 35.4 bits (80), Expect = 0.31
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 575 DEQSCEEDVSSDTCPKEEDTEEEKEVTSPPPEEDR 609
DEQS + S + P EED EEE+E +P P+E +
Sbjct: 302 DEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKK 336
>gi|14149987 WD repeat domain 24 [Homo sapiens]
Length = 790
Score = 35.4 bits (80), Expect = 0.31
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 86 DDDYVAVATSQGLVVVWELNQERRGKPEQMYVSSEHKGRRVTALCW 131
D++ +A A + G+VV W L + R K +Q++ +EHK R V +C+
Sbjct: 86 DENLLATAATNGVVVTWNLGRPSRNKQDQLF--TEHK-RTVNKVCF 128
>gi|182515228 mouse Mdm1 nuclear protein homolog isoform 1 [Homo
sapiens]
Length = 714
Score = 35.4 bits (80), Expect = 0.31
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 551 RKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDTEEEKE 599
+ TTEK+G ++P + VR L D ++ EDV KEE+ + E+E
Sbjct: 423 KNTTEKLGV--SAPTIPVRRRLAWDTENTSEDVQKQPGEKEEEDDNEEE 469
>gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens]
Length = 709
Score = 35.4 bits (80), Expect = 0.31
Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Query: 453 RIISSRRGS----QSDEDSCSLHSQTLSEDERFKEFTSQQEE---DLPDQCCGSHGNEDN 505
RI+S++ S +++E S ++ L D + + +S E + P++ C + +
Sbjct: 83 RIVSTKGKSATEYKNEEYQRSERNKRLDADRKIRLSSSASREPYKNQPEKTCVRKRDPER 142
Query: 506 VSHAPVMFETDKNETFLPFGIPLPFRSPSPLVSLQAVKESVSSFVRKTTEKIGTLHTSPD 565
+ +P +++ G+ + R+ S Q+ KE V+S + + G+ +S +
Sbjct: 143 RAKSPTPDGSER------IGLEVDRRASR---SSQSSKEEVNSEEYGSDHETGSSGSSDE 193
Query: 566 LKVRPELRGDEQSCEEDVSSDTCPKEEDTEEEKEVTSPPPEEDRFQE 612
E +E+ EEDV D EED EE++EV EE+ +E
Sbjct: 194 QGNNTE--NEEEGVEEDVEEDE-EVEEDAEEDEEVDEDGEEEEEEEE 237
>gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens]
Length = 727
Score = 35.4 bits (80), Expect = 0.31
Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Query: 453 RIISSRRGS----QSDEDSCSLHSQTLSEDERFKEFTSQQEE---DLPDQCCGSHGNEDN 505
RI+S++ S +++E S ++ L D + + +S E + P++ C + +
Sbjct: 83 RIVSTKGKSATEYKNEEYQRSERNKRLDADRKIRLSSSASREPYKNQPEKTCVRKRDPER 142
Query: 506 VSHAPVMFETDKNETFLPFGIPLPFRSPSPLVSLQAVKESVSSFVRKTTEKIGTLHTSPD 565
+ +P +++ G+ + R+ S Q+ KE V+S + + G+ +S +
Sbjct: 143 RAKSPTPDGSER------IGLEVDRRASR---SSQSSKEEVNSEEYGSDHETGSSGSSDE 193
Query: 566 LKVRPELRGDEQSCEEDVSSDTCPKEEDTEEEKEVTSPPPEEDRFQE 612
E +E+ EEDV D EED EE++EV EE+ +E
Sbjct: 194 QGNNTE--NEEEGVEEDVEEDE-EVEEDAEEDEEVDEDGEEEEEEEE 237
>gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo
sapiens]
Length = 5033
Score = 35.0 bits (79), Expect = 0.40
Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 22/181 (12%)
Query: 568 VRPELRGDEQSCEEDVSSDTCPKEEDTEEEKEVTSPPPEEDRFQELKVATAEAMTKLQDP 627
+ PE+ +E+ E++ EE+ EE++E T+ E++ +E + A E L++
Sbjct: 1866 IEPEVFTEEEEEEDEEEEGEEEDEEEKEEDEEETAQEKEDEEKEEEEAAEGEKEEGLEEG 1925
Query: 628 LV---LFESESLRMV-LQEWLSHLEKTFAMKDFSGVSDTDNSSMKLNQDVLLVNESKKGI 683
L+ L ES L+M L E+ E ++ + ++ ++ NQ S+ G+
Sbjct: 1926 LLQMKLPESVKLQMCHLLEYFCDQELQHRVESLAAFAERYVDKLQANQ------RSRYGL 1979
Query: 684 LDEDNEKEKRDSLGNEESVDKTACECVRSPRESLDDLFQIC-----SPCAIASGLRNDLA 738
L K S+ E+ +T E P+E ++ L Q C + +R DL
Sbjct: 1980 L------IKAFSMTAAETARRTR-EFRSPPQEQINMLLQFKDGTDEEDCPLPEEIRQDLL 2032
Query: 739 E 739
+
Sbjct: 2033 D 2033
>gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo
sapiens]
Length = 5038
Score = 35.0 bits (79), Expect = 0.40
Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 22/181 (12%)
Query: 568 VRPELRGDEQSCEEDVSSDTCPKEEDTEEEKEVTSPPPEEDRFQELKVATAEAMTKLQDP 627
+ PE+ +E+ E++ EE+ EE++E T+ E++ +E + A E L++
Sbjct: 1866 IEPEVFTEEEEEEDEEEEGEEEDEEEKEEDEEETAQEKEDEEKEEEEAAEGEKEEGLEEG 1925
Query: 628 LV---LFESESLRMV-LQEWLSHLEKTFAMKDFSGVSDTDNSSMKLNQDVLLVNESKKGI 683
L+ L ES L+M L E+ E ++ + ++ ++ NQ S+ G+
Sbjct: 1926 LLQMKLPESVKLQMCHLLEYFCDQELQHRVESLAAFAERYVDKLQANQ------RSRYGL 1979
Query: 684 LDEDNEKEKRDSLGNEESVDKTACECVRSPRESLDDLFQIC-----SPCAIASGLRNDLA 738
L K S+ E+ +T E P+E ++ L Q C + +R DL
Sbjct: 1980 L------IKAFSMTAAETARRTR-EFRSPPQEQINMLLQFKDGTDEEDCPLPEEIRQDLL 2032
Query: 739 E 739
+
Sbjct: 2033 D 2033
>gi|4507241 structure specific recognition protein 1 [Homo sapiens]
Length = 709
Score = 35.0 bits (79), Expect = 0.40
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 537 VSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDTEE 596
V ++ K+S S R ++ K + S K + + DE S E+ S + ED+EE
Sbjct: 633 VKVKMEKKSTPS--RGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKRRRSEDSEE 690
Query: 597 EKEVTSPPPEED 608
E+ ++PP ED
Sbjct: 691 EELASTPPSSED 702
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 34.7 bits (78), Expect = 0.53
Identities = 25/62 (40%), Positives = 29/62 (46%)
Query: 429 SACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQTLSEDERFKEFTSQQ 488
S+CSSR SS SS S S SG SS S S S S S + S +E S +
Sbjct: 2141 SSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSDE 2200
Query: 489 EE 490
EE
Sbjct: 2201 EE 2202
>gi|154759293 cysteine-rich hydrophobic domain 1 [Homo sapiens]
Length = 224
Score = 34.3 bits (77), Expect = 0.69
Identities = 20/72 (27%), Positives = 34/72 (47%)
Query: 534 SPLVSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEED 593
S L+ A +++S + E+ T +SP D++ EE+ + +EE+
Sbjct: 2 SILLPNMAEFDTISELEEEEEEEAATSSSSPSSSSSVSGPDDDEEDEEEEEEEEEEEEEE 61
Query: 594 TEEEKEVTSPPP 605
EEE+E PPP
Sbjct: 62 EEEEEEEAPPPP 73
>gi|134304846 Rb1-inducible coiled coil protein 1 isoform 2 [Homo
sapiens]
Length = 1591
Score = 33.5 bits (75), Expect = 1.2
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 5/131 (3%)
Query: 571 ELRGDEQSCEEDVSSDTCPKEEDTEEEKEVTSPPPEEDRFQELKVATAEAMTKLQDPLVL 630
E + DE+ +++ + + + + +K V+S E+DR Q ++ E +Q L
Sbjct: 1191 ERQKDEKITQQEEKYEAIIQNLEKDRQKLVSSQ--EQDREQLIQKLNCEKDEAIQTALKE 1248
Query: 631 F--ESESLRMVLQEWLSHLEKTFAMKDFSGVSDTDNSSMKLNQDVLLVNESKKGILD-ED 687
F E E + L E + HLE A + D+SS+ L E K + E+
Sbjct: 1249 FKLEREVVEKELLEKVKHLENQIAKSPAIDSTRGDSSSLVAELQEKLQEEKAKFLEQLEE 1308
Query: 688 NEKEKRDSLGN 698
EK K + + N
Sbjct: 1309 QEKRKNEEMQN 1319
>gi|134304842 Rb1-inducible coiled coil protein 1 isoform 1 [Homo
sapiens]
Length = 1594
Score = 33.5 bits (75), Expect = 1.2
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 5/131 (3%)
Query: 571 ELRGDEQSCEEDVSSDTCPKEEDTEEEKEVTSPPPEEDRFQELKVATAEAMTKLQDPLVL 630
E + DE+ +++ + + + + +K V+S E+DR Q ++ E +Q L
Sbjct: 1191 ERQKDEKITQQEEKYEAIIQNLEKDRQKLVSSQ--EQDREQLIQKLNCEKDEAIQTALKE 1248
Query: 631 F--ESESLRMVLQEWLSHLEKTFAMKDFSGVSDTDNSSMKLNQDVLLVNESKKGILD-ED 687
F E E + L E + HLE A + D+SS+ L E K + E+
Sbjct: 1249 FKLEREVVEKELLEKVKHLENQIAKSPAIDSTRGDSSSLVAELQEKLQEEKAKFLEQLEE 1308
Query: 688 NEKEKRDSLGN 698
EK K + + N
Sbjct: 1309 QEKRKNEEMQN 1319
>gi|75677376 coiled-coil domain containing 62 isoform b [Homo
sapiens]
Length = 684
Score = 33.5 bits (75), Expect = 1.2
Identities = 45/207 (21%), Positives = 90/207 (43%), Gaps = 19/207 (9%)
Query: 539 LQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPEL--RGDEQSCEEDVSSDTCPKEEDTEE 596
L+A+K V+ EK T+ + + R E+ E+SC D T +E+ +E
Sbjct: 212 LKALKIEVNKLKEDLNEK-----TTENNEQREEIIRLKQEKSCLHDELLFTVEREKRKDE 266
Query: 597 EKEVTSPPPEE--DRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMK 654
+ E L+ + + LQ + F E+ + ++Q + S +E++ A+
Sbjct: 267 LLNIAKSKQERTNSELHNLRQIYVKQQSDLQ--FLNFNVENSQELIQMYDSKMEESKALD 324
Query: 655 DFSGV--SDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRS 712
+ SD +N+ K++ + E + L +D + E L + DK++C+ +
Sbjct: 325 SSRDMCLSDLENNHPKVD----IKREKNQKSLFKDQKFEAM--LVQQNRSDKSSCDECKE 378
Query: 713 PRESLDDLFQICSPCAIASGLRNDLAE 739
++ +D +F S ++S DL E
Sbjct: 379 KKQQIDTVFGEKSVITLSSIFTKDLVE 405
>gi|30348972 coiled-coil domain containing 62 isoform a [Homo
sapiens]
Length = 682
Score = 33.5 bits (75), Expect = 1.2
Identities = 45/207 (21%), Positives = 90/207 (43%), Gaps = 19/207 (9%)
Query: 539 LQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPEL--RGDEQSCEEDVSSDTCPKEEDTEE 596
L+A+K V+ EK T+ + + R E+ E+SC D T +E+ +E
Sbjct: 212 LKALKIEVNKLKEDLNEK-----TTENNEQREEIIRLKQEKSCLHDELLFTVEREKRKDE 266
Query: 597 EKEVTSPPPEE--DRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMK 654
+ E L+ + + LQ + F E+ + ++Q + S +E++ A+
Sbjct: 267 LLNIAKSKQERTNSELHNLRQIYVKQQSDLQ--FLNFNVENSQELIQMYDSKMEESKALD 324
Query: 655 DFSGV--SDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRS 712
+ SD +N+ K++ + E + L +D + E L + DK++C+ +
Sbjct: 325 SSRDMCLSDLENNHPKVD----IKREKNQKSLFKDQKFEAM--LVQQNRSDKSSCDECKE 378
Query: 713 PRESLDDLFQICSPCAIASGLRNDLAE 739
++ +D +F S ++S DL E
Sbjct: 379 KKQQIDTVFGEKSVITLSSIFTKDLVE 405
>gi|56550086 WD repeat and HMG-box DNA binding protein 1 isoform 2
[Homo sapiens]
Length = 1006
Score = 33.5 bits (75), Expect = 1.2
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 10/116 (8%)
Query: 58 LIQKEGWKHRLFLSHREGAISQ---VACCLHDDDYVAVATSQGLVVVWELNQERRGKPEQ 114
L ++E W H+ LS + ISQ + Y+A + GL++VW N E + E+
Sbjct: 89 LYRRESWSHQFDLS--DNFISQTLNIVTWSPCGQYLAAGSINGLIIVW--NVETKDCMER 144
Query: 115 MYVSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQ 170
+ KG + L W R+ D G + ++ K +++ V V+
Sbjct: 145 V---KHEKGYAICGLAWHPTCGRISYTDAEGNLGLLENVCDPSGKTSSSKVSSRVE 197
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,389,029
Number of Sequences: 37866
Number of extensions: 2086050
Number of successful extensions: 8472
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 7992
Number of HSP's gapped (non-prelim): 412
length of query: 1129
length of database: 18,247,518
effective HSP length: 113
effective length of query: 1016
effective length of database: 13,968,660
effective search space: 14192158560
effective search space used: 14192158560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.