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Search of human proteins with 31543825
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31543825 spermatogenesis associated 4 [Homo sapiens]
(305 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31543825 spermatogenesis associated 4 [Homo sapiens] 614 e-176
gi|89363026 calponin-homology and microtubule-associated protein... 68 1e-11
gi|21389509 KPL2 protein isoform 2 [Homo sapiens] 39 0.004
gi|145699133 KPL2 protein isoform 1 [Homo sapiens] 39 0.004
gi|56550047 uveal autoantigen with coiled-coil domains and ankyr... 32 0.70
gi|59850762 uveal autoantigen with coiled-coil domains and ankyr... 32 0.70
gi|188528633 zinc finger protein 79 [Homo sapiens] 30 2.0
gi|55770834 centromere protein F [Homo sapiens] 30 2.7
gi|74229025 membralin isoform 1 [Homo sapiens] 30 2.7
gi|87299626 hypothetical protein LOC283461 [Homo sapiens] 30 2.7
gi|88703041 sorting nexin 6 isoform b [Homo sapiens] 30 3.5
gi|29029530 sulfotransferase family, cytosolic, 1C, member 1 iso... 30 3.5
gi|4507305 sulfotransferase family, cytosolic, 1C, member 1 isof... 30 3.5
gi|33946313 ninein isoform 4 [Homo sapiens] 30 3.5
gi|33946321 ninein isoform 5 [Homo sapiens] 30 3.5
gi|148536871 ninein isoform 1 [Homo sapiens] 30 3.5
gi|148536869 ninein isoform 2 [Homo sapiens] 30 3.5
gi|170932526 nuclear receptor coactivator 7 isoform 2 [Homo sapi... 29 4.5
gi|170932524 nuclear receptor coactivator 7 isoform 1 [Homo sapi... 29 4.5
gi|38202205 zinc finger, FYVE domain containing 26 [Homo sapiens] 29 5.9
gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo sa... 29 5.9
gi|178557734 microtubule-associated protein tau isoform 6 [Homo ... 28 7.7
gi|6754638 microtubule-associated protein tau isoform 2 [Homo sa... 28 7.7
gi|8400715 microtubule-associated protein tau isoform 4 [Homo sa... 28 7.7
gi|8400711 microtubule-associated protein tau isoform 3 [Homo sa... 28 7.7
gi|82534351 microtubule-associated protein tau isoform 1 [Homo s... 28 7.7
gi|178557736 microtubule-associated protein tau isoform 5 [Homo ... 28 7.7
gi|148277037 AP2 associated kinase 1 [Homo sapiens] 28 7.7
>gi|31543825 spermatogenesis associated 4 [Homo sapiens]
Length = 305
Score = 614 bits (1583), Expect = e-176
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 1 MAAAGQEKGYLTQTAAALDKSPSLSPQLAAPIRGRPKKCLVYPHAPKSSRLSRSVLRWLQ 60
MAAAGQEKGYLTQTAAALDKSPSLSPQLAAPIRGRPKKCLVYPHAPKSSRLSRSVLRWLQ
Sbjct: 1 MAAAGQEKGYLTQTAAALDKSPSLSPQLAAPIRGRPKKCLVYPHAPKSSRLSRSVLRWLQ 60
Query: 61 GLDLSFFPRNINRDFSNGFLIAEIFCIYYPWELELSSFENGTSLKVKLDNWAQLEKFLAR 120
GLDLSFFPRNINRDFSNGFLIAEIFCIYYPWELELSSFENGTSLKVKLDNWAQLEKFLAR
Sbjct: 61 GLDLSFFPRNINRDFSNGFLIAEIFCIYYPWELELSSFENGTSLKVKLDNWAQLEKFLAR 120
Query: 121 KKFKLPKELIHGTIHCKAGVPEILIEEVYTLLTHREIKSIQDDFVNFTDYSYQMRLPLVS 180
KKFKLPKELIHGTIHCKAGVPEILIEEVYTLLTHREIKSIQDDFVNFTDYSYQMRLPLVS
Sbjct: 121 KKFKLPKELIHGTIHCKAGVPEILIEEVYTLLTHREIKSIQDDFVNFTDYSYQMRLPLVS 180
Query: 181 RSTVSKSIKDNIRLSELLSNPNMLTNELKAEFLILLHMLQRKLGRKLNPEWFDVKPTVGE 240
RSTVSKSIKDNIRLSELLSNPNMLTNELKAEFLILLHMLQRKLGRKLNPEWFDVKPTVGE
Sbjct: 181 RSTVSKSIKDNIRLSELLSNPNMLTNELKAEFLILLHMLQRKLGRKLNPEWFDVKPTVGE 240
Query: 241 VTLNHLPAQASGRRYNLKVKRGRVVPVLPNIGSGGSSHREIHVKQAGQHSYYSAMKPIRN 300
VTLNHLPAQASGRRYNLKVKRGRVVPVLPNIGSGGSSHREIHVKQAGQHSYYSAMKPIRN
Sbjct: 241 VTLNHLPAQASGRRYNLKVKRGRVVPVLPNIGSGGSSHREIHVKQAGQHSYYSAMKPIRN 300
Query: 301 MDKKP 305
MDKKP
Sbjct: 301 MDKKP 305
>gi|89363026 calponin-homology and microtubule-associated protein
[Homo sapiens]
Length = 236
Score = 67.8 bits (164), Expect = 1e-11
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 58 WLQGLDLSFFPRNINRDFSNGFLIAEIFCIYYPWELELSSFENGTSLKVKLDNWAQL-EK 116
W+ + LS RN++RDFS+G L+AE+ Y+P +E+ ++ SL+ KL NW L K
Sbjct: 16 WVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPANSLQQKLSNWGHLNRK 75
Query: 117 FLARKKFKLPKELIHGTIHCKAGVPEILIEEVYTLLTHRE 156
L R F +P +++ C GV E+++ + L R+
Sbjct: 76 VLKRLNFSVPDDVMRKIAQCAPGVVELVLIPLRQRLEERQ 115
>gi|21389509 KPL2 protein isoform 2 [Homo sapiens]
Length = 514
Score = 39.3 bits (90), Expect = 0.004
Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 51 LSRSVLRWLQG---LDLSFFPRNINRDFSNGFLIAEIFCIYYPWELE--LSSFENGTSLK 105
+S + +WL + + P++ + FS+G+L+ E+ + +EL+ S F +
Sbjct: 1 MSEILCQWLNKELKVSRTVSPKSFAKAFSSGYLLGEVL---HKFELQDDFSEFLDSRVSS 57
Query: 106 VKLDNWAQLEKFLARKKFKLPKELIHGTIHCKAGVPEILIEEVYTLLTHRE 156
KL+N+++LE L + + + HG I K GV L+ ++Y L ++
Sbjct: 58 AKLNNFSRLEPTLNLLGVQFDQNVAHGIITEKPGVATKLLYQLYIALQKKK 108
>gi|145699133 KPL2 protein isoform 1 [Homo sapiens]
Length = 1822
Score = 39.3 bits (90), Expect = 0.004
Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 51 LSRSVLRWLQG---LDLSFFPRNINRDFSNGFLIAEIFCIYYPWELE--LSSFENGTSLK 105
+S + +WL + + P++ + FS+G+L+ E+ + +EL+ S F +
Sbjct: 1 MSEILCQWLNKELKVSRTVSPKSFAKAFSSGYLLGEVL---HKFELQDDFSEFLDSRVSS 57
Query: 106 VKLDNWAQLEKFLARKKFKLPKELIHGTIHCKAGVPEILIEEVYTLLTHRE 156
KL+N+++LE L + + + HG I K GV L+ ++Y L ++
Sbjct: 58 AKLNNFSRLEPTLNLLGVQFDQNVAHGIITEKPGVATKLLYQLYIALQKKK 108
>gi|56550047 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 2 [Homo sapiens]
Length = 1403
Score = 32.0 bits (71), Expect = 0.70
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 7/123 (5%)
Query: 90 PWELEL---SSFENGTSLKVKLDNWAQLEKFLARKKFKLPKELIHGTIHCKAGVPEILIE 146
P EL L +S+ LK +L+ + + + KL EL H CKA E
Sbjct: 412 PLELSLPSQTSYSENEILKKELEAMRTFCESAKQDRLKLQNELAHKVAECKALALEC--- 468
Query: 147 EVYTLLTHREIKSIQDDFVNFTDYSYQMRLPLVSRSTVSKSIKDNIRLSELLSNPNMLTN 206
E + +IK ++D + Y+ + T ++K+++ SE S + LT
Sbjct: 469 ERVKEDSDEQIKQLEDALKDVQKRMYESEGKVKQMQTHFLALKEHL-TSEAASGNHRLTE 527
Query: 207 ELK 209
ELK
Sbjct: 528 ELK 530
>gi|59850762 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 1 [Homo sapiens]
Length = 1416
Score = 32.0 bits (71), Expect = 0.70
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 7/123 (5%)
Query: 90 PWELEL---SSFENGTSLKVKLDNWAQLEKFLARKKFKLPKELIHGTIHCKAGVPEILIE 146
P EL L +S+ LK +L+ + + + KL EL H CKA E
Sbjct: 425 PLELSLPSQTSYSENEILKKELEAMRTFCESAKQDRLKLQNELAHKVAECKALALEC--- 481
Query: 147 EVYTLLTHREIKSIQDDFVNFTDYSYQMRLPLVSRSTVSKSIKDNIRLSELLSNPNMLTN 206
E + +IK ++D + Y+ + T ++K+++ SE S + LT
Sbjct: 482 ERVKEDSDEQIKQLEDALKDVQKRMYESEGKVKQMQTHFLALKEHL-TSEAASGNHRLTE 540
Query: 207 ELK 209
ELK
Sbjct: 541 ELK 543
>gi|188528633 zinc finger protein 79 [Homo sapiens]
Length = 498
Score = 30.4 bits (67), Expect = 2.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 22 PSLSPQLAAPIRGRPKKCLVYPHAPKSSRL 51
P LSPQ P+ RP+KC + + K+S +
Sbjct: 155 PVLSPQQRVPVEARPRKCETHTESFKNSEI 184
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 30.0 bits (66), Expect = 2.7
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 235 KPTVGEVTLNHLPAQA--SGRRYNLKVKRGRVVPVLPNIG--SGGSSHREI 281
+PT V +N+LP ++ R L+VKRGR+VP P G S GS + ++
Sbjct: 3064 EPTTKSVPVNNLPERSPTDSPREGLRVKRGRLVP-SPKAGLESNGSENCKV 3113
>gi|74229025 membralin isoform 1 [Homo sapiens]
Length = 620
Score = 30.0 bits (66), Expect = 2.7
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 2 AAAGQEKGYLTQTAAALDKSPSLSPQLAAPIRGRPKKCL----VYPHAPKSS 49
AAAG + G++ +TAA + + LS A+ + RP L PHAP+ S
Sbjct: 532 AAAGGDLGWMAETAAIITDASFLSGLSASLLERRPASPLGPAGGLPHAPQDS 583
>gi|87299626 hypothetical protein LOC283461 [Homo sapiens]
Length = 652
Score = 30.0 bits (66), Expect = 2.7
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 19/124 (15%)
Query: 88 YYPWELELSS-FENGTSLKVKLDNWAQLEKFLARKKFKLPKELIHGTIHCKAGVPEILIE 146
YYP E FEN K + ++K+ A +P E +H G+ EIL+E
Sbjct: 397 YYPSSSERKEKFENDYQEKTPQKS---IQKYPANSMGNIPSEELHSKQSWDFGLDEILME 453
Query: 147 E--VYTLLTHR-EIKSIQ-DDFVNFTDYSYQMR-----------LPLVSRSTVSKSIKDN 191
E +Y+L + R K I D + SY R LP +S+ I+D+
Sbjct: 454 EGGIYSLKSKRISTKKISLDSAQSSRSTSYSPRPTDSCFSSSSDLPSEDEDQISQQIEDS 513
Query: 192 IRLS 195
R++
Sbjct: 514 NRMT 517
>gi|88703041 sorting nexin 6 isoform b [Homo sapiens]
Length = 418
Score = 29.6 bits (65), Expect = 3.5
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 127 KELIHGTIHCKAGVPEILIEEVYTLLTHREIKSIQDDFVNFTDYSYQMRLPLVSRSTVSK 186
++ + T+H K+ +P E + H E + D FV DY+ + P R
Sbjct: 55 RDKVKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDA 114
Query: 187 SIKDNIRLSE-----LLSNPNMLTNELKAEFLIL 215
S + +L E + EL+AE+L +
Sbjct: 115 SREKLQKLGEGEGSMTKEEFTKMKQELEAEYLAI 148
>gi|29029530 sulfotransferase family, cytosolic, 1C, member 1
isoform b [Homo sapiens]
Length = 307
Score = 29.6 bits (65), Expect = 3.5
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 141 PEILIEEVYTLLTHREIKSIQDDFVNFTDYSYQMRLPLVSRSTVSKSIKD 190
P+ I +V + + +++ D V T + P+ +RSTVSKSI D
Sbjct: 212 PKHEIRKVMQFMGKKVDETVLDKIVQETSFEKMKENPMTNRSTVSKSILD 261
>gi|4507305 sulfotransferase family, cytosolic, 1C, member 1 isoform
a [Homo sapiens]
Length = 296
Score = 29.6 bits (65), Expect = 3.5
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 141 PEILIEEVYTLLTHREIKSIQDDFVNFTDYSYQMRLPLVSRSTVSKSIKD 190
P+ I +V + + +++ D V T + P+ +RSTVSKSI D
Sbjct: 201 PKHEIRKVMQFMGKKVDETVLDKIVQETSFEKMKENPMTNRSTVSKSILD 250
>gi|33946313 ninein isoform 4 [Homo sapiens]
Length = 2096
Score = 29.6 bits (65), Expect = 3.5
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 181 RSTVSKSIKDNIRL-SELLSNPNMLTNELKAEFLILLHMLQRKLGRKLNPEWFDVKPTVG 239
R ++ S+K+N RL +ELL N L AE+ L + LQR L L ++ D+ P+
Sbjct: 476 RDRLALSLKENSRLENELLENAEKL-----AEYENLTNKLQRNLENVLAEKFGDLDPSSA 530
Query: 240 EVTL 243
E L
Sbjct: 531 EFFL 534
>gi|33946321 ninein isoform 5 [Homo sapiens]
Length = 2090
Score = 29.6 bits (65), Expect = 3.5
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 181 RSTVSKSIKDNIRL-SELLSNPNMLTNELKAEFLILLHMLQRKLGRKLNPEWFDVKPTVG 239
R ++ S+K+N RL +ELL N L AE+ L + LQR L L ++ D+ P+
Sbjct: 470 RDRLALSLKENSRLENELLENAEKL-----AEYENLTNKLQRNLENVLAEKFGDLDPSSA 524
Query: 240 EVTL 243
E L
Sbjct: 525 EFFL 528
>gi|148536871 ninein isoform 1 [Homo sapiens]
Length = 2046
Score = 29.6 bits (65), Expect = 3.5
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 181 RSTVSKSIKDNIRL-SELLSNPNMLTNELKAEFLILLHMLQRKLGRKLNPEWFDVKPTVG 239
R ++ S+K+N RL +ELL N L AE+ L + LQR L L ++ D+ P+
Sbjct: 470 RDRLALSLKENSRLENELLENAEKL-----AEYENLTNKLQRNLENVLAEKFGDLDPSSA 524
Query: 240 EVTL 243
E L
Sbjct: 525 EFFL 528
>gi|148536869 ninein isoform 2 [Homo sapiens]
Length = 2133
Score = 29.6 bits (65), Expect = 3.5
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 181 RSTVSKSIKDNIRL-SELLSNPNMLTNELKAEFLILLHMLQRKLGRKLNPEWFDVKPTVG 239
R ++ S+K+N RL +ELL N L AE+ L + LQR L L ++ D+ P+
Sbjct: 470 RDRLALSLKENSRLENELLENAEKL-----AEYENLTNKLQRNLENVLAEKFGDLDPSSA 524
Query: 240 EVTL 243
E L
Sbjct: 525 EFFL 528
>gi|170932526 nuclear receptor coactivator 7 isoform 2 [Homo
sapiens]
Length = 931
Score = 29.3 bits (64), Expect = 4.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 89 YPWELELSSFENGTSLKVKLDNWAQLE 115
YPW L S+ E+GTSLK A L+
Sbjct: 791 YPWRLAYSTLEHGTSLKTLYRKSASLD 817
>gi|170932524 nuclear receptor coactivator 7 isoform 1 [Homo
sapiens]
Length = 942
Score = 29.3 bits (64), Expect = 4.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 89 YPWELELSSFENGTSLKVKLDNWAQLE 115
YPW L S+ E+GTSLK A L+
Sbjct: 802 YPWRLAYSTLEHGTSLKTLYRKSASLD 828
>gi|38202205 zinc finger, FYVE domain containing 26 [Homo sapiens]
Length = 2539
Score = 28.9 bits (63), Expect = 5.9
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 114 LEKFLARKKFKLPK------ELIHGTIHCKAGVPEILIEEVYTLLTHREIKSIQD 162
LEK+LAR+K LP E + + + +PE ++EE+Y LT + + D
Sbjct: 83 LEKWLAREKKLLPVVFRRKLEFLLLSEDLQGDIPENILEELYETLTQGAVGHVPD 137
>gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo
sapiens]
Length = 601
Score = 28.9 bits (63), Expect = 5.9
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 166 NFTDYSYQMRLPLVSRSTVSKSIKDNIRLSELLSNPNMLTNELKA 210
NF + QM+ L+S + I +N + +++SNP+++ + + A
Sbjct: 177 NFMELQQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMA 221
>gi|178557734 microtubule-associated protein tau isoform 6 [Homo
sapiens]
Length = 776
Score = 28.5 bits (62), Expect = 7.7
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 4 AGQEKGYLTQTAAALDKSPSLSPQLAAPIRGRPKKCLVYPHAPKSSRLSRSVLR 57
+G GY + + S S +P L P PKK V PKS ++S L+
Sbjct: 526 SGDRSGYSSPGSPGTPGSRSRTPSLPTPPTREPKKVAVVRTPPKSPSSAKSRLQ 579
>gi|6754638 microtubule-associated protein tau isoform 2 [Homo
sapiens]
Length = 441
Score = 28.5 bits (62), Expect = 7.7
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 4 AGQEKGYLTQTAAALDKSPSLSPQLAAPIRGRPKKCLVYPHAPKSSRLSRSVLR 57
+G GY + + S S +P L P PKK V PKS ++S L+
Sbjct: 191 SGDRSGYSSPGSPGTPGSRSRTPSLPTPPTREPKKVAVVRTPPKSPSSAKSRLQ 244
>gi|8400715 microtubule-associated protein tau isoform 4 [Homo
sapiens]
Length = 352
Score = 28.5 bits (62), Expect = 7.7
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 4 AGQEKGYLTQTAAALDKSPSLSPQLAAPIRGRPKKCLVYPHAPKSSRLSRSVLR 57
+G GY + + S S +P L P PKK V PKS ++S L+
Sbjct: 133 SGDRSGYSSPGSPGTPGSRSRTPSLPTPPTREPKKVAVVRTPPKSPSSAKSRLQ 186
>gi|8400711 microtubule-associated protein tau isoform 3 [Homo
sapiens]
Length = 383
Score = 28.5 bits (62), Expect = 7.7
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 4 AGQEKGYLTQTAAALDKSPSLSPQLAAPIRGRPKKCLVYPHAPKSSRLSRSVLR 57
+G GY + + S S +P L P PKK V PKS ++S L+
Sbjct: 133 SGDRSGYSSPGSPGTPGSRSRTPSLPTPPTREPKKVAVVRTPPKSPSSAKSRLQ 186
>gi|82534351 microtubule-associated protein tau isoform 1 [Homo
sapiens]
Length = 758
Score = 28.5 bits (62), Expect = 7.7
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 4 AGQEKGYLTQTAAALDKSPSLSPQLAAPIRGRPKKCLVYPHAPKSSRLSRSVLR 57
+G GY + + S S +P L P PKK V PKS ++S L+
Sbjct: 508 SGDRSGYSSPGSPGTPGSRSRTPSLPTPPTREPKKVAVVRTPPKSPSSAKSRLQ 561
>gi|178557736 microtubule-associated protein tau isoform 5 [Homo
sapiens]
Length = 412
Score = 28.5 bits (62), Expect = 7.7
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 4 AGQEKGYLTQTAAALDKSPSLSPQLAAPIRGRPKKCLVYPHAPKSSRLSRSVLR 57
+G GY + + S S +P L P PKK V PKS ++S L+
Sbjct: 162 SGDRSGYSSPGSPGTPGSRSRTPSLPTPPTREPKKVAVVRTPPKSPSSAKSRLQ 215
>gi|148277037 AP2 associated kinase 1 [Homo sapiens]
Length = 961
Score = 28.5 bits (62), Expect = 7.7
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 3 AAGQEKGYLTQTAAALDKSPSLSPQLAAPIRGRPKKCLVYPHAPKSSRL 51
AAGQ+ Q AAA +P+ P + AP+R +PK P A + ++
Sbjct: 570 AAGQQPQ--PQPAAAPQPAPAQEPAIQAPVRQQPKVQTTPPPAVQGQKV 616
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,174,685
Number of Sequences: 37866
Number of extensions: 482261
Number of successful extensions: 1159
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1135
Number of HSP's gapped (non-prelim): 33
length of query: 305
length of database: 18,247,518
effective HSP length: 102
effective length of query: 203
effective length of database: 14,385,186
effective search space: 2920192758
effective search space used: 2920192758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.