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Search of human proteins with 31083028
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31083028 CCR4 carbon catabolite repression 4-like [Homo
sapiens]
(431 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31083028 CCR4 carbon catabolite repression 4-like [Homo sapiens] 889 0.0
gi|189027129 phosphodiesterase 12 [Homo sapiens] 103 2e-22
gi|115583679 CCR4-NOT transcription complex, subunit 6-like [Hom... 94 2e-19
gi|28872863 CCR4-NOT transcription complex, subunit 6 [Homo sapi... 90 3e-18
gi|224282153 angel homolog 1 [Homo sapiens] 81 2e-15
gi|36030946 LOC90806 protein [Homo sapiens] 81 2e-15
gi|23510348 TRAF and TNF receptor-associated protein [Homo sapiens] 40 0.004
gi|15451844 ADAM metallopeptidase domain 19 preproprotein [Homo ... 36 0.059
gi|145309320 forkhead box Q1 [Homo sapiens] 36 0.077
gi|119220552 sidekick 1 [Homo sapiens] 35 0.10
gi|49472835 bridging integrator 2 [Homo sapiens] 35 0.10
gi|239753721 PREDICTED: hypothetical protein [Homo sapiens] 35 0.13
gi|239748254 PREDICTED: hypothetical protein XP_002346600 [Homo ... 35 0.13
gi|239742155 PREDICTED: hypothetical protein XP_002342442 [Homo ... 35 0.13
gi|8922976 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 [Homo sapiens] 34 0.29
gi|21361458 Rho guanine nucleotide exchange factor (GEF) 17 [Hom... 34 0.29
gi|148276998 zinc finger protein 628 [Homo sapiens] 33 0.50
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 32 0.85
gi|222136583 inositol polyphosphate phosphatase-like 1 [Homo sap... 32 0.85
gi|239756274 PREDICTED: hypothetical protein [Homo sapiens] 32 1.1
gi|239750811 PREDICTED: hypothetical protein XP_002347568 [Homo ... 32 1.1
gi|239745171 PREDICTED: hypothetical protein XP_002343379 [Homo ... 32 1.1
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 32 1.1
gi|150170729 microtubule associated serine/threonine kinase 3 [H... 32 1.1
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 32 1.5
gi|50345881 cytoplasmic polyadenylation element binding protein ... 32 1.5
gi|4885237 forkhead box C2 [Homo sapiens] 32 1.5
gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo ... 32 1.5
gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo ... 32 1.5
gi|239745511 PREDICTED: hypothetical protein XP_002343508 [Homo ... 32 1.5
>gi|31083028 CCR4 carbon catabolite repression 4-like [Homo sapiens]
Length = 431
Score = 889 bits (2297), Expect = 0.0
Identities = 431/431 (100%), Positives = 431/431 (100%)
Query: 1 MFHSPRRLCSALLQRDAPGLRRLPAPGLRRPLSPPAAVPRPASPRLLAAASAASGAARSC 60
MFHSPRRLCSALLQRDAPGLRRLPAPGLRRPLSPPAAVPRPASPRLLAAASAASGAARSC
Sbjct: 1 MFHSPRRLCSALLQRDAPGLRRLPAPGLRRPLSPPAAVPRPASPRLLAAASAASGAARSC 60
Query: 61 SRTVCSMGTGTSRLYSALAKTLNSSAASQHPEYLVSPDPEHLEPIDPKELLEECRAVLHT 120
SRTVCSMGTGTSRLYSALAKTLNSSAASQHPEYLVSPDPEHLEPIDPKELLEECRAVLHT
Sbjct: 61 SRTVCSMGTGTSRLYSALAKTLNSSAASQHPEYLVSPDPEHLEPIDPKELLEECRAVLHT 120
Query: 121 RPPRFQRDFVDLRTDCPSTHPPIRVMQWNILAQALGEGKDNFVQCPVEALKWEERKCLIL 180
RPPRFQRDFVDLRTDCPSTHPPIRVMQWNILAQALGEGKDNFVQCPVEALKWEERKCLIL
Sbjct: 121 RPPRFQRDFVDLRTDCPSTHPPIRVMQWNILAQALGEGKDNFVQCPVEALKWEERKCLIL 180
Query: 181 EEILAYQPDILCLQEVDHYFDTFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFF 240
EEILAYQPDILCLQEVDHYFDTFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFF
Sbjct: 181 EEILAYQPDILCLQEVDHYFDTFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFF 240
Query: 241 LQNRFKLVNSANIRLTAMTLKTNQVAIAQTLECKESGRQFCIAVTHLKARTGWERFRSAQ 300
LQNRFKLVNSANIRLTAMTLKTNQVAIAQTLECKESGRQFCIAVTHLKARTGWERFRSAQ
Sbjct: 241 LQNRFKLVNSANIRLTAMTLKTNQVAIAQTLECKESGRQFCIAVTHLKARTGWERFRSAQ 300
Query: 301 GCDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSADGQSEPP 360
GCDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSADGQSEPP
Sbjct: 301 GCDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSADGQSEPP 360
Query: 361 YTTWKIRTSGECRHTLDYIWYSKHALNVRSALDLLTEEQIGPNRLPSFNYPSDHLSLVCD 420
YTTWKIRTSGECRHTLDYIWYSKHALNVRSALDLLTEEQIGPNRLPSFNYPSDHLSLVCD
Sbjct: 361 YTTWKIRTSGECRHTLDYIWYSKHALNVRSALDLLTEEQIGPNRLPSFNYPSDHLSLVCD 420
Query: 421 FSFTEESDGLS 431
FSFTEESDGLS
Sbjct: 421 FSFTEESDGLS 431
>gi|189027129 phosphodiesterase 12 [Homo sapiens]
Length = 609
Score = 103 bits (258), Expect = 2e-22
Identities = 92/334 (27%), Positives = 154/334 (46%), Gaps = 73/334 (21%)
Query: 143 IRVMQWNILAQALGEGKDN----FVQCPVEALKWEERKCLILEEILAYQPDILCLQEVDH 198
IR + +NILA + + + + C AL+ + R+ LI +E+ Y D++CLQEVD
Sbjct: 295 IRTVSYNILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQKELTGYNADVICLQEVDR 354
Query: 199 --YFDTFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLVNSANIR-- 254
+ D+ P L G +G F K +H +G A F+ +++F L++ +I
Sbjct: 355 AVFSDSLVPALEAFGLEGVFRIK--------QH----EGLATFYRKSKFSLLSQHDISFY 402
Query: 255 ------------LTAMTLKTN------------QVAIAQTLECKESGRQFCIAVTHLKAR 290
L + L + QV++ Q+ K+S ++ C+A THL
Sbjct: 403 EALESDPLHKELLEKLVLYPSAQEKVLQRSSVLQVSVLQST--KDSSKRICVANTHLYWH 460
Query: 291 TGWERFRSAQGCDLLQNLQNITQGAK--IPLIVCGDFNAEPTEEVYKHFASSSL------ 342
R Q L ++++++ IP+I CGDFN+ P+ +Y + S+
Sbjct: 461 PKGGYIRLIQMAVALAHIRHVSCDLYPGIPVIFCGDFNSTPSTGMYHFVINGSIPEDHED 520
Query: 343 ------------NLNSAYKLLSADGQSEPPYTTWKIRTSGECRHTLDYIWYSKHALNVRS 390
+L +KL SA G EP YT + G LDYI+ +AL V
Sbjct: 521 WASNGEEERCNMSLTHFFKLKSACG--EPAYTNYV----GGFHGCLDYIFIDLNALEVEQ 574
Query: 391 ALDLLTEEQIGPNR-LPSFNYPSDHLSLVCDFSF 423
+ L + E++ ++ LPS ++PSDH++LVCD +
Sbjct: 575 VIPLPSHEEVTTHQALPSVSHPSDHIALVCDLKW 608
>gi|115583679 CCR4-NOT transcription complex, subunit 6-like [Homo
sapiens]
Length = 555
Score = 94.0 bits (232), Expect = 2e-19
Identities = 86/348 (24%), Positives = 134/348 (38%), Gaps = 79/348 (22%)
Query: 145 VMQWNILAQALGEGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEVD--HYFDT 202
VM +N+L + + CP AL WE RK I+EEI+ DI+ LQEV+ YF
Sbjct: 191 VMCYNVLCDKYAT-RQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTL 249
Query: 203 FQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLVNSANIRLTAMTLKT 262
F P L GY G F PK + + + DGCA+FF +F LV + + +
Sbjct: 250 FLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMAN 309
Query: 263 --------------NQVAIAQTLECKE-------------SGRQFCIAVTHLKARTGWER 295
+ + +A LE + + +A H+ +
Sbjct: 310 SDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLIVANAHMHWDPEYSD 369
Query: 296 FRSAQGCDLLQNLQNITQGA------------KIPLIVCGDFNAEPTEEVYKHFA----- 338
+ Q + ++NI + A IPL++C D N+ P V ++ +
Sbjct: 370 VKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDSGVVEYLSNGGVA 429
Query: 339 -------------------------SSSLNLNSAYKLLSADGQSEPPYTTWKIRTSGECR 373
SS + ++L SA + PYT + G
Sbjct: 430 DNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLKSAYENNLMPYTNYTFDFKG--- 486
Query: 374 HTLDYIWYSKHALNVRSALDLLTEEQIGPNRL---PSFNYPSDHLSLV 418
+DYI+YSK +NV L L + + N + P + PSDH SL+
Sbjct: 487 -VIDYIFYSKTHMNVLGVLGPLDPQWLVENNITGCPHPHIPSDHFSLL 533
>gi|28872863 CCR4-NOT transcription complex, subunit 6 [Homo
sapiens]
Length = 557
Score = 90.1 bits (222), Expect = 3e-18
Identities = 87/349 (24%), Positives = 130/349 (37%), Gaps = 81/349 (23%)
Query: 145 VMQWNILAQALGEGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEVD--HYFDT 202
VM +N+L + + CP AL W+ RK I++EIL+ DI+ LQEV+ Y+
Sbjct: 191 VMCYNVLCDKYAT-RQLYGYCPSWALNWDYRKKAIIQEILSCNADIVSLQEVETEQYYSF 249
Query: 203 FQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLVNSANIRLTAMTLKT 262
F L GY G F PK + + + DGCA+FF +F LV + + +
Sbjct: 250 FLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMAN 309
Query: 263 NQ--------------VAIAQTLECKESGRQFCIAVTHL----------KARTGWERFRS 298
++ + +A LE ++ + HL A W+ S
Sbjct: 310 SEGSEAMLNRVMTKDNIGVAVLLELRKESIEMPSGKPHLGTEKQLILVANAHMHWDPEYS 369
Query: 299 ----AQGCDLLQNLQNITQGAK-------------IPLIVCGDFNAEPTEEVYKHFASSS 341
Q L ++NI A IPL++C D N+ P V ++ ++
Sbjct: 370 DVKLVQTMMFLSEVKNIIDKASRNLKSSVLGEFGTIPLVLCADLNSLPDSGVVEYLSTGG 429
Query: 342 LNLNS------------------------------AYKLLSADGQSEPPYTTWKIRTSGE 371
+ N +KL SA PYT + G
Sbjct: 430 VETNHKDFKELRYNESLTNFSCHGKNGTTNGRITHGFKLQSAYESGLMPYTNYTFDFKG- 488
Query: 372 CRHTLDYIWYSKHALNVRSALDLLTEEQIGPNRL---PSFNYPSDHLSL 417
+DYI+YSK LN L L + N + P PSDH SL
Sbjct: 489 ---IIDYIFYSKPQLNTLGILGPLDHHWLVENNISGCPHPLIPSDHFSL 534
>gi|224282153 angel homolog 1 [Homo sapiens]
Length = 670
Score = 80.9 bits (198), Expect = 2e-15
Identities = 65/235 (27%), Positives = 108/235 (45%), Gaps = 27/235 (11%)
Query: 145 VMQWNILAQAL-GEGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEV--DHYFD 201
+M +NILAQ L + + ++ C + L W R +++E + PDILCLQEV DHY++
Sbjct: 247 LMSYNILAQDLMQQSSELYLHCHPDILNWNYRFVNLMQEFQHWDPDILCLQEVQEDHYWE 306
Query: 202 TFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLVNSANIRLTAMTLK 261
+P L +G+ T F K + C DGCA+ + RF+L+ ++ + L+
Sbjct: 307 QLEPSLRMMGF--TCFYKRRTGC-------KTDGCAVCYKPTRFRLLCASPVEYFRPGLE 357
Query: 262 ------TNQVAIAQTLECKESGR----QFCIAVTHLKARTGWERFRSAQGCDLLQNLQNI 311
V + Q L + G+ C+A TH+ + AQ LL + +
Sbjct: 358 LLNRDNVGLVLLLQPLVPEGLGQVSVAPLCVANTHILYNPRRGDVKLAQMAILLAEVDKV 417
Query: 312 ---TQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNS--AYKLLSADGQSEPPY 361
+ G+ P+I+CGD N+ P +Y L + A+K+ + S Y
Sbjct: 418 ARLSDGSHCPIILCGDLNSVPDSPLYNFIRDGELQYHGMPAWKVSGQEDFSHQLY 472
>gi|36030946 LOC90806 protein [Homo sapiens]
Length = 544
Score = 80.9 bits (198), Expect = 2e-15
Identities = 63/211 (29%), Positives = 94/211 (44%), Gaps = 21/211 (9%)
Query: 145 VMQWNILAQALGEGKDNFVQ-CPVEALKWEERKCLILEEILAYQPDILCLQEV--DHYFD 201
VM +NIL+Q L E + + C L W R IL+EI + D+LCLQEV DHY
Sbjct: 169 VMSYNILSQDLLEDNSHLYRHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQEDHYGA 228
Query: 202 TFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLVNSANI---RLTAM 258
+P L LGY + + PDGCA+ F ++F L++ + R
Sbjct: 229 EIRPSLESLGYHCEY---------KMRTGRKPDGCAICFKHSKFSLLSVNPVEFFRPDIS 279
Query: 259 TLKTNQVAIAQTLECK---ESGRQFCIAVTHLKARTGWERFRSAQGCDLLQNLQNITQ-- 313
L + V + L+ K + C+A THL + Q LL + ++
Sbjct: 280 LLDRDNVGLVLLLQPKIPYAACPAICVANTHLLYNPRRGDIKLTQLAMLLAEISSVAHQK 339
Query: 314 -GAKIPLIVCGDFNAEPTEEVYKHFASSSLN 343
G+ P+++CGDFN+ P +Y LN
Sbjct: 340 DGSFCPIVMCGDFNSVPGSPLYSFIKEGKLN 370
Score = 30.8 bits (68), Expect = 2.5
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 17/64 (26%)
Query: 375 TLDYIWYSKH----------------ALNVRSALDLLTEEQIGP-NRLPSFNYPSDHLSL 417
T+DYI+YS L + + L LLTE+ + N LP+ N SDHL L
Sbjct: 477 TVDYIFYSAEKEDVAGHPGAEVALVGGLKLLARLSLLTEQDLWTVNGLPNENNSSDHLPL 536
Query: 418 VCDF 421
+ F
Sbjct: 537 LAKF 540
>gi|23510348 TRAF and TNF receptor-associated protein [Homo sapiens]
Length = 362
Score = 40.0 bits (92), Expect = 0.004
Identities = 57/256 (22%), Positives = 100/256 (39%), Gaps = 38/256 (14%)
Query: 174 ERKCLILEEILAYQPDILCLQEVDHYFDTFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGP 233
ER + + Y PD++ LQEV P S L + + + + H G
Sbjct: 131 ERARGVCSYLALYSPDVIFLQEV------IPPYYSYLKKRSSNYE------IITGHEEGY 178
Query: 234 DGCALFFLQNRFKLVNSANIRLTAMTLKTNQVAIAQTLECKESGRQFCIAVTHLKARTGW 293
A+ ++R KL + I + + N + + + SG + C+ +HL++ G
Sbjct: 179 F-TAIMLKKSRVKLKSQEIIPFPSTKMMRNLLCVHVNV----SGNELCLMTSHLESTRGH 233
Query: 294 ERFRSAQGCDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSA 353
R Q +L+ +Q + A + I GD N E N+ ++ L
Sbjct: 234 AAERMNQLKMVLKKMQEAPESATV--IFAGDTNLRDRE--VTRCGGLPNNIVDVWEFL-- 287
Query: 354 DGQSEPPYTTW------KIRTSGECRHTLDYIWYSKHALN---VRSALDLLTEEQIGPNR 404
G+ + TW + + C+ D I++ A + +LDLL G +
Sbjct: 288 -GKPKHCQYTWDTQMNSNLGITAACKLRFDRIFFRAAAEEGHIIPRSLDLL-----GLEK 341
Query: 405 LPSFNYPSDHLSLVCD 420
L +PSDH L+C+
Sbjct: 342 LDCGRFPSDHWGLLCN 357
>gi|15451844 ADAM metallopeptidase domain 19 preproprotein [Homo
sapiens]
Length = 918
Score = 36.2 bits (82), Expect = 0.059
Identities = 19/43 (44%), Positives = 21/43 (48%)
Query: 2 FHSPRRLCSALLQRDAPGLRRLPAPGLRRPLSPPAAVPRPASP 44
F PR AL PG R LP PG PL PP A P+ + P
Sbjct: 852 FSRPRPPQKALPANPVPGRRSLPRPGGASPLRPPGAGPQQSRP 894
>gi|145309320 forkhead box Q1 [Homo sapiens]
Length = 403
Score = 35.8 bits (81), Expect = 0.077
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 1 MFHSPRRLCSALLQRDAPGLRRLPAPGLRRPLSPPAAVPRPASPRLLAAA 50
+F R+ S APGLR APGL P +PP A PASPR+ + A
Sbjct: 208 VFRRRRKRLSHRAPVPAPGLRPEEAPGL--PAAPPPAPAAPASPRMRSPA 255
>gi|119220552 sidekick 1 [Homo sapiens]
Length = 2213
Score = 35.4 bits (80), Expect = 0.10
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 14 QRDAPGLRRLPAPGLRRPLSPPAAVPRPASPRLLAAASA--ASGAARSCSRTVCSMGTGT 71
+R PG R PG RP P P P+ PR S +GA R R +G G
Sbjct: 21 ERAGPGRPRGSPPGRARPSLAPRPGPEPSRPRAAPETSGGDTAGAGRCGGRRAAKLGPGR 80
Query: 72 SRLYSALAKTLN 83
++ LA L+
Sbjct: 81 RGWWALLALQLH 92
>gi|49472835 bridging integrator 2 [Homo sapiens]
Length = 565
Score = 35.4 bits (80), Expect = 0.10
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 20 LRRLPAPGLRRPLSPPAAVPRPASPRLLAAASAASGAARSCSRTVCSMGTGTSRLYSALA 79
++R AP R P A PRP+S + ++ +A+ G + + R S+GTGT+ ++L
Sbjct: 407 IQRTSAPPSRPPPPRATASPRPSSGNIPSSPTASGGGSPTSPR--ASLGTGTASPRTSLE 464
Query: 80 KTLNSSAASQHPEYLVSPDPEHLEPIDPKEL 110
+ N + + + E++ +P+EL
Sbjct: 465 VSPNPEPPEKPVRTPEAKENENIHNQNPEEL 495
>gi|239753721 PREDICTED: hypothetical protein [Homo sapiens]
Length = 342
Score = 35.0 bits (79), Expect = 0.13
Identities = 34/111 (30%), Positives = 46/111 (41%), Gaps = 19/111 (17%)
Query: 25 APGLRRPLSPPAAVP-----RPASPRLL-AAASAASGAARSCSRTVCSMGTGTSRLYSAL 78
AP RRP +P A P RPA PR AA + G A R + G+G R
Sbjct: 207 APASRRPPAPTVAAPRGLETRPALPRRAGAAVHGSEGLALRAKRRDANAGSGARRCRELP 266
Query: 79 AKTLNSSAASQHPEYLVSPDPEHLEPIDPKELLEECRAVLHTRP--PRFQR 127
+ +AA P +L+S + + +E A + RP PRF R
Sbjct: 267 ESWILRAAAGLGPMFLLS-----------ERVGDEVWAEIPCRPSAPRFPR 306
>gi|239748254 PREDICTED: hypothetical protein XP_002346600 [Homo
sapiens]
Length = 342
Score = 35.0 bits (79), Expect = 0.13
Identities = 34/111 (30%), Positives = 46/111 (41%), Gaps = 19/111 (17%)
Query: 25 APGLRRPLSPPAAVP-----RPASPRLL-AAASAASGAARSCSRTVCSMGTGTSRLYSAL 78
AP RRP +P A P RPA PR AA + G A R + G+G R
Sbjct: 207 APASRRPPAPTVAAPRGLETRPALPRRAGAAVHGSEGLALRAKRRDANAGSGARRCRELP 266
Query: 79 AKTLNSSAASQHPEYLVSPDPEHLEPIDPKELLEECRAVLHTRP--PRFQR 127
+ +AA P +L+S + + +E A + RP PRF R
Sbjct: 267 ESWILRAAAGLGPMFLLS-----------ERVGDEVWAEIPCRPSAPRFPR 306
>gi|239742155 PREDICTED: hypothetical protein XP_002342442 [Homo
sapiens]
Length = 342
Score = 35.0 bits (79), Expect = 0.13
Identities = 34/111 (30%), Positives = 46/111 (41%), Gaps = 19/111 (17%)
Query: 25 APGLRRPLSPPAAVP-----RPASPRLL-AAASAASGAARSCSRTVCSMGTGTSRLYSAL 78
AP RRP +P A P RPA PR AA + G A R + G+G R
Sbjct: 207 APASRRPPAPTVAAPRGLETRPALPRRAGAAVHGSEGLALRAKRRDANAGSGARRCRELP 266
Query: 79 AKTLNSSAASQHPEYLVSPDPEHLEPIDPKELLEECRAVLHTRP--PRFQR 127
+ +AA P +L+S + + +E A + RP PRF R
Sbjct: 267 ESWILRAAAGLGPMFLLS-----------ERVGDEVWAEIPCRPSAPRFPR 306
>gi|8922976 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 [Homo sapiens]
Length = 540
Score = 33.9 bits (76), Expect = 0.29
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
Query: 14 QRDAPGLRRLPAPGLRRPLSPPAAVP---RPASPRLLAAASAASGAARSCSR---TVCSM 67
Q++AP +R+L + G L V + A+P ++ + S S R VC+
Sbjct: 113 QQEAPAVRKLSSKGSFADLGLEPRVLHALQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAA 172
Query: 68 GTGTSRLYSALAKTLNSSAASQHPEYLVSPDPEHLEPIDPKELLEECRAV 117
TG+ + S L L + L P P L + +EL ++ RAV
Sbjct: 173 ETGSGKTLSYLLPLLQRLLGQPSLDSLPIPAPRGLVLVPSRELAQQVRAV 222
>gi|21361458 Rho guanine nucleotide exchange factor (GEF) 17 [Homo
sapiens]
Length = 2063
Score = 33.9 bits (76), Expect = 0.29
Identities = 22/54 (40%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 4 SPRRLCSALLQRDAPGLRRLPAPGLRRPLSPPAAVPRPASPRLLAAASAASGAA 57
S R LC + P R P P LR SPP P PA P L A+A AA
Sbjct: 1547 SARILCIGAVPGLQPRCHREPPPSLR---SPPETAPEPAGPELDVEAAADEEAA 1597
>gi|148276998 zinc finger protein 628 [Homo sapiens]
Length = 1055
Score = 33.1 bits (74), Expect = 0.50
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 12 LLQRDAPGLRRLPAPGLRRPLSPPAAVPRPASPRLL----AAASAASGAARSCSRTVCSM 67
LL + A GL+ +P+ + PP P PA P+L+ ++A A G AR R V
Sbjct: 709 LLVQTAQGLQLIPSS-----VQPPTPPPPPAPPKLILLPSSSAGAGGGRARQGPRAVGKA 763
Query: 68 GTG 70
G G
Sbjct: 764 GQG 766
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 32.3 bits (72), Expect = 0.85
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 9/105 (8%)
Query: 24 PAPGLRRPLSPPAAVPRPASPRLLAAAS-AASGAARSCS---RTVCSMGTGTSRLYSALA 79
P P + L+PPA PR +P L S +G SCS R+ +G S + +
Sbjct: 2049 PGPSMEPSLTPPAVPPR--APILSKGPSPPLNGNILSCSPDRRSPSPKESGRSHWDDSTS 2106
Query: 80 KTLNSSAASQHPE-YLVSPDPEHLEPIDPKELLEECRAVLHTRPP 123
+ A + PE SP P H P+ L E A H PP
Sbjct: 2107 DSELEKGAREQPEKEAQSPSPPHPIPMGSPTLWPETEA--HVSPP 2149
>gi|222136583 inositol polyphosphate phosphatase-like 1 [Homo sapiens]
Length = 1258
Score = 32.3 bits (72), Expect = 0.85
Identities = 41/133 (30%), Positives = 50/133 (37%), Gaps = 26/133 (19%)
Query: 18 PGLRRLPAPGLR-------RPLSPPAAVPRP-----ASPRLLAAASAASGAARSCSRTVC 65
P L LP P +R R PP A PRP SP ASG RSCS V
Sbjct: 1067 PSLDPLPGPVVRGRGGAEARGPPPPKAHPRPPLPPGPSPASTFLGEVASGDDRSCS--VL 1124
Query: 66 SMGTGTSRLYSALAKTLNSSAASQHPEYLVSPDPEHLEPIDPKELLEECRAVLHTRPPRF 125
M S + A A S+ + P P L+P P+ L + L PPR
Sbjct: 1125 QMAKTLSEVDYAPAGPARSA---------LLPGPLELQP--PRGLPSDYGRPLSFPPPRI 1173
Query: 126 QRDF-VDLRTDCP 137
+ DL + P
Sbjct: 1174 RESIQEDLAEEAP 1186
>gi|239756274 PREDICTED: hypothetical protein [Homo sapiens]
Length = 775
Score = 32.0 bits (71), Expect = 1.1
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 17 APGLRRLPAPGLRRPLSPPAAVPRPASPRLLAAASAASGAARSCSRTVCSMG 68
AP R L PG L P A PR RLLA+ S ARS + C++G
Sbjct: 700 APRTRLLSNPGAASGLVPVYAAPRRLGLRLLASCSR---PARSAATETCALG 748
>gi|239750811 PREDICTED: hypothetical protein XP_002347568 [Homo
sapiens]
Length = 765
Score = 32.0 bits (71), Expect = 1.1
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 17 APGLRRLPAPGLRRPLSPPAAVPRPASPRLLAAASAASGAARSCSRTVCSMG 68
AP R L PG L P A PR RLLA+ S ARS + C++G
Sbjct: 690 APRTRLLSNPGAASGLVPVYAAPRRLGLRLLASCSR---PARSAATETCALG 738
>gi|239745171 PREDICTED: hypothetical protein XP_002343379 [Homo
sapiens]
Length = 765
Score = 32.0 bits (71), Expect = 1.1
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 17 APGLRRLPAPGLRRPLSPPAAVPRPASPRLLAAASAASGAARSCSRTVCSMG 68
AP R L PG L P A PR RLLA+ S ARS + C++G
Sbjct: 690 APRTRLLSNPGAASGLVPVYAAPRRLGLRLLASCSR---PARSAATETCALG 738
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 32.0 bits (71), Expect = 1.1
Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 14/120 (11%)
Query: 28 LRRPLSPPAAVPRPASPRLLAAASAASGAARSCSRTVCSMGTGTSRLYSALAKTLNSSAA 87
L+RP S AA+ A AAA+AA+ AA + + L +A A L ++AA
Sbjct: 489 LKRPFSAAAAIAAAA-----AAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPALAAAAA 543
Query: 88 SQHPEYLVSPDPEHLEPIDPKELLEECRAVLHTRPPRFQRDFVDLRTDCPSTHPPIRVMQ 147
+P P + A H++ P + CP+ PP + ++
Sbjct: 544 P-------APAPAAAPAVAAAPAAAASAAPSHSQKPSV--PLIQASRPCPAAQPPTKFIK 594
>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
sapiens]
Length = 1309
Score = 32.0 bits (71), Expect = 1.1
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 24 PAPGLRRPLSP---PAAVPRPA-SPRLLAAASAAS--GAARSCSR-----TVCSMGTGTS 72
P+P L RPLSP P A P SPR +AASA + A R+ R ++ S G GT+
Sbjct: 38 PSPTLSRPLSPLSVPTAGSSPLDSPRNFSAASALNFPFARRADGRRWSLASLPSSGYGTN 97
Query: 73 RLYSALAKTLNSSAASQHPEYLVSPDPEH 101
S L+ + +S + +PD H
Sbjct: 98 TPSSTLSSSSSSRERLHQLPFQPTPDELH 126
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein
[Homo sapiens]
Length = 3969
Score = 31.6 bits (70), Expect = 1.5
Identities = 23/75 (30%), Positives = 32/75 (42%)
Query: 14 QRDAPGLRRLPAPGLRRPLSPPAAVPRPASPRLLAAASAASGAARSCSRTVCSMGTGTSR 73
+R G R P L P PP P +P A +AA+ AA S V S
Sbjct: 24 RRGLGGAPRQRVPALLLPPGPPVGGGGPGAPPSPPAVAAAAAAAGSSGAGVPGGAAAASA 83
Query: 74 LYSALAKTLNSSAAS 88
S+ A + +SS++S
Sbjct: 84 ASSSSASSSSSSSSS 98
>gi|50345881 cytoplasmic polyadenylation element binding protein 3
[Homo sapiens]
Length = 698
Score = 31.6 bits (70), Expect = 1.5
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 24 PAPGLRRPLSPPAAVP-----RPASPRLLAAASAASGAARSCSRTVCSMGTGTSRLYSAL 78
PAP +P PP A P PASP A ++ AA + S + +S + +A
Sbjct: 171 PAPQPAQPAQPPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAA 230
Query: 79 AKTLNSSAAS 88
A SSA+S
Sbjct: 231 AAAAASSASS 240
>gi|4885237 forkhead box C2 [Homo sapiens]
Length = 501
Score = 31.6 bits (70), Expect = 1.5
Identities = 25/91 (27%), Positives = 30/91 (32%), Gaps = 6/91 (6%)
Query: 13 LQRDAPGLRRLPAPGLRRPLSPPAAVPRPASPRLLAAASAASG------AARSCSRTVCS 66
L+ PG P G + PP A+P A+P A G CS S
Sbjct: 278 LRTSPPGGELSPGAGRAGLVVPPLALPYAAAPPAAYGQPCAQGLEAGAAGGYQCSMRAMS 337
Query: 67 MGTGTSRLYSALAKTLNSSAASQHPEYLVSP 97
+ TG R A S HP SP
Sbjct: 338 LYTGAERPAHMCVPPALDEALSDHPSGPTSP 368
>gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo
sapiens]
Length = 427
Score = 31.6 bits (70), Expect = 1.5
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 14 QRDAPGLRRLPAPGLRRPLSPPAAV--------PRPASPRLLAAASAASGAARSCSRTVC 65
+R A LR +P PG+ R + A PRP RLLAA +AS S+T C
Sbjct: 60 RRQAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASN-----SKTPC 114
Query: 66 SMGTGTSRLYSA 77
+ + + RL A
Sbjct: 115 TCMSASPRLSKA 126
>gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo
sapiens]
Length = 537
Score = 31.6 bits (70), Expect = 1.5
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 14 QRDAPGLRRLPAPGLRRPLSPPAAV--------PRPASPRLLAAASAASGAARSCSRTVC 65
+R A LR +P PG+ R + A PRP RLLAA +AS S+T C
Sbjct: 60 RRQAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASN-----SKTPC 114
Query: 66 SMGTGTSRLYSA 77
+ + + RL A
Sbjct: 115 TCMSASPRLSKA 126
>gi|239745511 PREDICTED: hypothetical protein XP_002343508 [Homo
sapiens]
Length = 427
Score = 31.6 bits (70), Expect = 1.5
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 14 QRDAPGLRRLPAPGLRRPLSPPAAV--------PRPASPRLLAAASAASGAARSCSRTVC 65
+R A LR +P PG+ R + A PRP RLLAA +AS S+T C
Sbjct: 60 RRQAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASN-----SKTPC 114
Query: 66 SMGTGTSRLYSA 77
+ + + RL A
Sbjct: 115 TCMSASPRLSKA 126
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,066,852
Number of Sequences: 37866
Number of extensions: 933899
Number of successful extensions: 4734
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 4579
Number of HSP's gapped (non-prelim): 230
length of query: 431
length of database: 18,247,518
effective HSP length: 105
effective length of query: 326
effective length of database: 14,271,588
effective search space: 4652537688
effective search space used: 4652537688
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.