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Search of human proteins with 30795190
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30795190 Williams-Beuren syndrome chromosome region 27 [Homo
sapiens]
(245 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30795190 Williams-Beuren syndrome chromosome region 27 [Homo ... 508 e-144
gi|23199995 Williams Beuren syndrome chromosome region 22 protei... 42 4e-04
gi|9506741 glycine N-methyltransferase [Homo sapiens] 36 0.027
gi|118600965 hexaprenyldihydroxybenzoate methyltransferase [Homo... 34 0.13
gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens] 32 0.39
gi|58219056 methyltransferase like 10 [Homo sapiens] 32 0.50
gi|161377433 methyltransferase like 8 [Homo sapiens] 32 0.66
gi|167234429 zinc finger and BTB domain containing 17 [Homo sapi... 31 0.86
gi|73747877 rabconnectin-3 beta isoform 1 [Homo sapiens] 31 1.1
gi|93141204 methyltransferase like 2B [Homo sapiens] 30 1.5
gi|10092677 pyridoxal phosphatase [Homo sapiens] 30 1.9
gi|45446740 ATP-binding cassette, sub-family A, member 2 isoform... 30 2.5
gi|47078218 ATP-binding cassette, sub-family A, member 2 isoform... 30 2.5
gi|169167975 PREDICTED: hypothetical protein LOC100129566 [Homo ... 29 3.3
gi|169167690 PREDICTED: hypothetical protein LOC100129566 [Homo ... 29 3.3
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 29 4.3
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 29 4.3
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 29 4.3
gi|165932358 methyltransferase like 2A [Homo sapiens] 29 4.3
gi|21264320 NLR family, pyrin domain containing 6 [Homo sapiens] 29 4.3
gi|169168212 PREDICTED: hypothetical protein LOC100129566 [Homo ... 28 5.6
gi|40018642 hypothetical protein LOC79133 isoform 1 [Homo sapiens] 28 5.6
gi|74136559 prion protein interacting protein [Homo sapiens] 28 5.6
gi|217330634 serine/threonine kinase 36 [Homo sapiens] 28 5.6
gi|68448528 mesothelin-like [Homo sapiens] 28 7.3
gi|223556010 protein arginine methyltransferase 3 isoform 3 [Hom... 28 9.5
gi|223556008 protein arginine methyltransferase 3 isoform 2 [Hom... 28 9.5
gi|44771198 protein arginine methyltransferase 3 isoform 1 [Homo... 28 9.5
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 28 9.5
gi|37674210 slingshot 2 [Homo sapiens] 28 9.5
>gi|30795190 Williams-Beuren syndrome chromosome region 27 [Homo
sapiens]
Length = 245
Score = 508 bits (1307), Expect = e-144
Identities = 245/245 (100%), Positives = 245/245 (100%)
Query: 1 MAQEEGGSLPEVRARVRAAHGIPDLAQKLHFYDRWAPDYDQDVATLLYRAPRLAVDCLTQ 60
MAQEEGGSLPEVRARVRAAHGIPDLAQKLHFYDRWAPDYDQDVATLLYRAPRLAVDCLTQ
Sbjct: 1 MAQEEGGSLPEVRARVRAAHGIPDLAQKLHFYDRWAPDYDQDVATLLYRAPRLAVDCLTQ 60
Query: 61 ALPGPPHSALILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQAQAPGLYQRLSLCTL 120
ALPGPPHSALILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQAQAPGLYQRLSLCTL
Sbjct: 61 ALPGPPHSALILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQAQAPGLYQRLSLCTL 120
Query: 121 GQEPLPSPEGTFDAVLIVGALSDGQVPCNAIPELHVTKPGGLVCLTTRTNSSNLQYKEAL 180
GQEPLPSPEGTFDAVLIVGALSDGQVPCNAIPELHVTKPGGLVCLTTRTNSSNLQYKEAL
Sbjct: 121 GQEPLPSPEGTFDAVLIVGALSDGQVPCNAIPELHVTKPGGLVCLTTRTNSSNLQYKEAL 180
Query: 181 EATLDRLEQAGMWEGLVAWPVDRLWTAGSWLPPSWRWYPASLPRMASSPALSTCTESGRR 240
EATLDRLEQAGMWEGLVAWPVDRLWTAGSWLPPSWRWYPASLPRMASSPALSTCTESGRR
Sbjct: 181 EATLDRLEQAGMWEGLVAWPVDRLWTAGSWLPPSWRWYPASLPRMASSPALSTCTESGRR 240
Query: 241 PRLRK 245
PRLRK
Sbjct: 241 PRLRK 245
>gi|23199995 Williams Beuren syndrome chromosome region 22 protein
[Homo sapiens]
Length = 281
Score = 42.4 bits (98), Expect = 4e-04
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 71 ILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQAQAPGLYQRLSLCTLGQEPLPSPEG 130
+LD+ CGTGL + L G + G+D SP ML++A + L L +GQ +P G
Sbjct: 57 LLDIGCGTGLSGSYLSDEGHYWV-GLDISPAMLDEAVDREIEGDLLLGDMGQ-GIPFKPG 114
Query: 131 TFDAVLIVGALSDGQVPCNA 150
TFD + + A+ Q CNA
Sbjct: 115 TFDGCISISAV---QWLCNA 131
>gi|9506741 glycine N-methyltransferase [Homo sapiens]
Length = 295
Score = 36.2 bits (82), Expect = 0.027
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 13/81 (16%)
Query: 71 ILDVACGTGLVAAELRAPGFLQLHGVDGSPGML------------EQAQAPGLYQRLSLC 118
+LDVACGTG+ + L GF + VD S ML E A + + +
Sbjct: 61 VLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRHEPAFDKWVIEEANWM 119
Query: 119 TLGQEPLPSPEGTFDAVLIVG 139
TL ++ S EG FDAV+ +G
Sbjct: 120 TLDKDVPQSAEGGFDAVICLG 140
>gi|118600965 hexaprenyldihydroxybenzoate methyltransferase [Homo
sapiens]
Length = 369
Score = 33.9 bits (76), Expect = 0.13
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 16/125 (12%)
Query: 63 PGPPHSAL-ILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQAQA-----PGLYQRLS 116
PG P + ILDV CG GL+ L G + G+D ++ AQ P L +R+
Sbjct: 141 PGKPLLGMKILDVGCGGGLLTEPLGRLG-ASVIGIDPVDENIKTAQCHKSFDPVLDKRIE 199
Query: 117 --LCTLGQEPLPSPEGTFDAVL---IVGALSDGQVPCNAIPELHVTKPGGLVCLTTRTNS 171
+C+L +E + TFDAV+ +V + D + V KPGG + +TT N
Sbjct: 200 YRVCSL-EEIVEETAETFDAVVASEVVEHVIDLETFLQCC--CQVLKPGGSLFITT-INK 255
Query: 172 SNLQY 176
+ L Y
Sbjct: 256 TQLSY 260
>gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens]
Length = 882
Score = 32.3 bits (72), Expect = 0.39
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 51 PRLAVDCLTQALPGPPHSALILDVACGTGLVAAELR-APGFLQLHGVDGSPGMLEQAQAP 109
P++AVD L Q GP S+L + G+ + +E++ A G LH GS + +P
Sbjct: 748 PQVAVDALLQGAVGPEVSSLSIHGRAGSCPIESEMQGAMGMEPLHRKAGSLDL--NFTSP 805
Query: 110 GLYQRLSLCTLGQEPLPSPEGTFDAVLIVGALSDGQV 146
LS+ + EP P + V+ S+ ++
Sbjct: 806 SRQAPLSMAAIRPEPKLLPRERYRVVVSYPPQSEAEI 842
>gi|58219056 methyltransferase like 10 [Homo sapiens]
Length = 291
Score = 32.0 bits (71), Expect = 0.50
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 66 PHSALILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLE 104
P A +LD+ G G+ EL GF + G+D SP ++
Sbjct: 78 PLDASVLDIGTGNGVFLVELAKFGFSNITGIDYSPSAIQ 116
>gi|161377433 methyltransferase like 8 [Homo sapiens]
Length = 407
Score = 31.6 bits (70), Expect = 0.66
Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 23/139 (16%)
Query: 59 TQALPGPPHSALILDVACGTG------LVAAELRAPGFLQLHGVDGSPGMLEQAQAPGLY 112
T PG + IL+V CG G L E FL + D + G +E ++ Y
Sbjct: 188 TGLFPGSNATFRILEVGCGAGNSVFPILNTLENSPESFL--YCCDFASGAVELVKSHSSY 245
Query: 113 QRLSLCTLGQE------PLPSPEGTFDAVLIVGALSD-----GQVPCNAIPELHVTKPGG 161
+ + P P P+G D +L+V LS Q N + +L KPGG
Sbjct: 246 RATQCFAFVHDVCDDGLPYPFPDGILDVILLVFVLSSIHPDRMQGVVNRLSKL--LKPGG 303
Query: 162 LVCLTT--RTNSSNLQYKE 178
++ R + + L++K+
Sbjct: 304 MLLFRDYGRYDKTQLRFKK 322
>gi|167234429 zinc finger and BTB domain containing 17 [Homo
sapiens]
Length = 803
Score = 31.2 bits (69), Expect = 0.86
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 103 LEQAQAPGLYQRLSLCTLGQEPLPSPEGTFDAVLIVGALS--DGQVPCNAIPELH--VTK 158
L+ + A GL Q L + L SPE D + + L D C+A+ L T
Sbjct: 62 LDISNAAGLGQVLEFMYTAKLSL-SPENVDDVLAVATFLQMQDIITACHALKSLAEPATS 120
Query: 159 PGGLV-CLTTRTNSSNLQYKEALEATLDRLEQAG 191
PGG L T + ++ +TL RLEQAG
Sbjct: 121 PGGNAEALATEGGDKRAKEEKVATSTLSRLEQAG 154
>gi|73747877 rabconnectin-3 beta isoform 1 [Homo sapiens]
Length = 1490
Score = 30.8 bits (68), Expect = 1.1
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 101 GMLEQAQAPGLYQRLSLCTLGQEPLPSPEGTFDAVLIVGALSD-GQVPCNAIPEL---HV 156
G ++Q AP + R G +P PS L+ S + C +P+L
Sbjct: 945 GQIKQVAAPVVSARSDADHSGSDP-PSAPALHTCFLVNEGWSQLAAMHCVMLPDLLGLDK 1003
Query: 157 TKPGGLVCLTTRTNSSNLQYKEALEATL----DRLEQAGMWEGLVAW 199
+P L L R L+ +EA +A L R+EQAG E + AW
Sbjct: 1004 FRPPLLEMLARRWQDRCLEVREAAQALLLAELRRIEQAGRKEAIDAW 1050
>gi|93141204 methyltransferase like 2B [Homo sapiens]
Length = 378
Score = 30.4 bits (67), Expect = 1.5
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 20/133 (15%)
Query: 63 PGPPHSALILDVACGTGLVAAEL----RAPGFLQLHGVDGSPGMLEQAQAPGLYQRL--- 115
PG + IL+V CG G + PG L ++ D S +E Q Y
Sbjct: 176 PGSSATYRILEVGCGVGNTVFPILQTNNDPG-LFVYCCDFSSTAIELVQTNSEYDPSRCF 234
Query: 116 ----SLCTLGQEPLPSPEGTFDAVLIVGALSDGQVP---CNAIPEL-HVTKPGGLVCLTT 167
LC ++ P P+G+ D ++++ LS VP AI L + KPGG+V L
Sbjct: 235 AFVHDLCD-EEKSYPVPKGSLDIIILIFVLS-AVVPDKMQKAINRLSRLLKPGGMVLLRD 292
Query: 168 --RTNSSNLQYKE 178
R + + L++K+
Sbjct: 293 YGRYDMAQLRFKK 305
>gi|10092677 pyridoxal phosphatase [Homo sapiens]
Length = 296
Score = 30.0 bits (66), Expect = 1.9
Identities = 26/58 (44%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 44 ATLLYRAPRLAVDCLTQALPGPPHSALILDVACGTGLVAAELRAPGFLQLHGVDGSPG 101
A L+ + A L Q LPGPP + + V G GL AELRA G L+L G D S G
Sbjct: 82 AEQLFSSALCAARLLRQRLPGPPDAPGAVFVLGGEGL-RAELRAAG-LRLAG-DPSAG 136
>gi|45446740 ATP-binding cassette, sub-family A, member 2 isoform a
[Homo sapiens]
Length = 2436
Score = 29.6 bits (65), Expect = 2.5
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 194 EGLVAWPVDRLWTAGSWLPPSWRWYPASLPRMASSPALSTCTESG 238
E L AW V TAG P W P SLPR+ P TC+ G
Sbjct: 1607 EDLQAWNVSLPPTAG---PEMWTSAP-SLPRLVREPVRCTCSAQG 1647
>gi|47078218 ATP-binding cassette, sub-family A, member 2 isoform b
[Homo sapiens]
Length = 2466
Score = 29.6 bits (65), Expect = 2.5
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 194 EGLVAWPVDRLWTAGSWLPPSWRWYPASLPRMASSPALSTCTESG 238
E L AW V TAG P W P SLPR+ P TC+ G
Sbjct: 1637 EDLQAWNVSLPPTAG---PEMWTSAP-SLPRLVREPVRCTCSAQG 1677
>gi|169167975 PREDICTED: hypothetical protein LOC100129566 [Homo
sapiens]
Length = 155
Score = 29.3 bits (64), Expect = 3.3
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
Query: 61 ALPGPPHSALILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQAQAPGL 111
+LPGPPH + + A +R P + + G PGM+ APG+
Sbjct: 82 SLPGPPHPGM---------MPAPHMRGPAMMPMMG-PPPPGMMPGGPAPGM 122
>gi|169167690 PREDICTED: hypothetical protein LOC100129566 [Homo
sapiens]
Length = 155
Score = 29.3 bits (64), Expect = 3.3
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
Query: 61 ALPGPPHSALILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQAQAPGL 111
+LPGPPH + + A +R P + + G PGM+ APG+
Sbjct: 82 SLPGPPHPGM---------MPAPHMRGPAMMPMMG-PPPPGMMPGGPAPGM 122
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 28.9 bits (63), Expect = 4.3
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 18/67 (26%)
Query: 63 PGPPHSALILDVACGTG-------LVAAELRAPGFLQL-----------HGVDGSPGMLE 104
PGPP ++L+L G+G + A E +A LQ G G PG L
Sbjct: 357 PGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLG 416
Query: 105 QAQAPGL 111
Q +PGL
Sbjct: 417 QPGSPGL 423
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 28.9 bits (63), Expect = 4.3
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 18/67 (26%)
Query: 63 PGPPHSALILDVACGTG-------LVAAELRAPGFLQL-----------HGVDGSPGMLE 104
PGPP ++L+L G+G + A E +A LQ G G PG L
Sbjct: 336 PGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLG 395
Query: 105 QAQAPGL 111
Q +PGL
Sbjct: 396 QPGSPGL 402
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 28.9 bits (63), Expect = 4.3
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 18/67 (26%)
Query: 63 PGPPHSALILDVACGTG-------LVAAELRAPGFLQL-----------HGVDGSPGMLE 104
PGPP ++L+L G+G + A E +A LQ G G PG L
Sbjct: 443 PGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLG 502
Query: 105 QAQAPGL 111
Q +PGL
Sbjct: 503 QPGSPGL 509
>gi|165932358 methyltransferase like 2A [Homo sapiens]
Length = 378
Score = 28.9 bits (63), Expect = 4.3
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 20/133 (15%)
Query: 63 PGPPHSALILDVACGTGLVAAEL----RAPGFLQLHGVDGSPGMLEQAQAPGLYQRL--- 115
PG + IL+V CG G + PG L ++ D S +E Q Y
Sbjct: 176 PGSSATYRILEVGCGVGNTVFPILQTNNDPG-LFVYCCDFSSTAIELVQTNSEYDPSRCF 234
Query: 116 ----SLCTLGQEPLPSPEGTFDAVLIVGALSDGQVP---CNAIPEL-HVTKPGGLVCLTT 167
LC ++ P P+G+ D ++++ LS VP AI L + KPGG++ L
Sbjct: 235 AFVHDLCD-EEKSYPVPKGSLDIIILIFVLS-AIVPDKMQKAINRLSRLLKPGGMMLLRD 292
Query: 168 --RTNSSNLQYKE 178
R + + L++K+
Sbjct: 293 YGRYDMAQLRFKK 305
>gi|21264320 NLR family, pyrin domain containing 6 [Homo sapiens]
Length = 892
Score = 28.9 bits (63), Expect = 4.3
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 185 DRLEQAGMW---EGLVAWPVDRLWTAGSWLPPSWRWYPASLPRMASSPALSTCTESG 238
+RL +AG+ EGL AWP R+ T LP R + + SPAL+T SG
Sbjct: 766 NRLSEAGLRMLSEGL-AWPQCRVQTVRVQLPDPQRGLQYLVGMLRQSPALTTLDLSG 821
>gi|169168212 PREDICTED: hypothetical protein LOC100129566 [Homo
sapiens]
Length = 155
Score = 28.5 bits (62), Expect = 5.6
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
Query: 61 ALPGPPHSALILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQAQAPGL 111
+LPGPPH + + A +R P + + G PGM+ APG+
Sbjct: 82 SLPGPPHPGM---------MPAPHMRGPPMMPMMG-PPPPGMMPGGPAPGM 122
>gi|40018642 hypothetical protein LOC79133 isoform 1 [Homo sapiens]
Length = 345
Score = 28.5 bits (62), Expect = 5.6
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 65 PPHSALILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQAQAPGLYQRLSLCTLGQEP 124
P + L LD+ CG G +A L + D + L+ + + L +E
Sbjct: 87 PRNFPLALDLGCGRGYIAQYLNKETIGKFFQADIAENALKNSSETEIPTVSVLA--DEEF 144
Query: 125 LPSPEGTFDAVLIVGALS---DGQVPCNAIPELH-VTKPGGL 162
LP E TFD L+V +LS +P A+ ++H + KP G+
Sbjct: 145 LPFKENTFD--LVVSSLSLHWVNDLP-RALEQIHYILKPDGV 183
>gi|74136559 prion protein interacting protein [Homo sapiens]
Length = 337
Score = 28.5 bits (62), Expect = 5.6
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 193 WEG-LVAWP-VDRLWTAGSWLPPSWRWYPA-----SLPRMASSPA 230
WEG LV+WP L +W+ PSW +P +L ++SPA
Sbjct: 16 WEGGLVSWPPAPPLTLPWTWMGPSWGQHPGHWGFPALTEPSASPA 60
>gi|217330634 serine/threonine kinase 36 [Homo sapiens]
Length = 1315
Score = 28.5 bits (62), Expect = 5.6
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 71 ILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQAQAPGLYQRLSLCTLGQEPLP 126
+L++ACG ++ + L + PG+ + + G ++LSL +LG + LP
Sbjct: 1237 LLEMACGDP--QPNVKEAALIALRSLQQEPGIHQVLVSLGASEKLSLLSLGNQSLP 1290
>gi|68448528 mesothelin-like [Homo sapiens]
Length = 1053
Score = 28.1 bits (61), Expect = 7.3
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 9/47 (19%)
Query: 124 PLPSPEGTFDAVLIVGALSDGQVP--------CNAIPELHVTKPGGL 162
P P+P GT A LI GAL + C+ P+ V PGGL
Sbjct: 265 PAPAPAGTLTAHLIPGALQSSGLTLLLSLAAHCSG-PQAKVLSPGGL 310
>gi|223556010 protein arginine methyltransferase 3 isoform 3 [Homo
sapiens]
Length = 454
Score = 27.7 bits (60), Expect = 9.5
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 70 LILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQAQAPGLYQRLSLCTLGQ 122
++LDV CGTG+++ G ++ GVD Q+ LYQ + + L +
Sbjct: 181 VVLDVGCGTGILSMFAAKAGAKKVLGVD---------QSEILYQAMDIIRLNK 224
>gi|223556008 protein arginine methyltransferase 3 isoform 2 [Homo
sapiens]
Length = 469
Score = 27.7 bits (60), Expect = 9.5
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 70 LILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQAQAPGLYQRLSLCTLGQ 122
++LDV CGTG+++ G ++ GVD Q+ LYQ + + L +
Sbjct: 196 VVLDVGCGTGILSMFAAKAGAKKVLGVD---------QSEILYQAMDIIRLNK 239
>gi|44771198 protein arginine methyltransferase 3 isoform 1 [Homo
sapiens]
Length = 531
Score = 27.7 bits (60), Expect = 9.5
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 70 LILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQAQAPGLYQRLSLCTLGQ 122
++LDV CGTG+++ G ++ GVD Q+ LYQ + + L +
Sbjct: 258 VVLDVGCGTGILSMFAAKAGAKKVLGVD---------QSEILYQAMDIIRLNK 301
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 27.7 bits (60), Expect = 9.5
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 88 PGFLQLHGVDGSPGMLEQAQAPGLYQRLSLC--TLGQEPLPSPEG 130
PGFL ++G+ G PG PG L C T G P P+G
Sbjct: 100 PGFLGINGIPGHPGQPGPRGPPG----LDGCNGTQGAVGFPGPDG 140
>gi|37674210 slingshot 2 [Homo sapiens]
Length = 1423
Score = 27.7 bits (60), Expect = 9.5
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 26/90 (28%)
Query: 139 GALSDGQVPCNAIPELHVTKPGGLV----CLTTRTNSSNLQYKEALEATLDRLEQAGMWE 194
G + + C A PEL K G+ CLTT ++ ++L+ E E +
Sbjct: 801 GHMEQDEDSCTAQPEL--AKDSGMCNPEGCLTTHSSIADLEEGEPAEGEQE--------- 849
Query: 195 GLVAWPVDRLWTAGSWLPPSWRWYPASLPR 224
GS + P +WYP S+ R
Sbjct: 850 -----------LQGSGMHPGAKWYPGSVRR 868
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,449,457
Number of Sequences: 37866
Number of extensions: 571798
Number of successful extensions: 1644
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1618
Number of HSP's gapped (non-prelim): 51
length of query: 245
length of database: 18,247,518
effective HSP length: 100
effective length of query: 145
effective length of database: 14,460,918
effective search space: 2096833110
effective search space used: 2096833110
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.