Guide to the Human Genome
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Name: C20orf7 Sequence: fasta or formatted (345aa) NCBI GI: 40018642
Description:

hypothetical protein LOC79133 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {317aa} hypothetical protein LOC79133 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         28           4
 C cysteine            1.2          4           1
 D aspartate           5.2         18           1
 E glutamate           7.5         26           2
 F phenylalanine       4.3         15           2
 G glycine             7.8         27           2
 H histidine           1.7          6           1
 I isoleucine          4.3         15           1
 K lysine              4.3         15           2
 L leucine            10.1         35           2
 M methionine          2.6          9           1
 N asparagine          4.9         17           2
 P proline             5.8         20           2
 Q glutamine           3.2         11           1
 R arginine            7.5         26           2
 S serine              5.8         20           2
 T threonine           4.9         17           1
 V valine              4.9         17           2
 W tryptophan          1.7          6           1
 Y tyrosine            3.8         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC79133 isoform 1 
C20orf7               0.836   hypothetical protein LOC79133 isoform 2 
WBSCR22               0.025   Williams Beuren syndrome chromosome region 22 protei...
COQ5                  0.023   coenzyme Q5 homolog, methyltransferase 
C8orf79               0.015   hypothetical protein LOC57604 isoform 1 
COQ3                  0.009   hexaprenyldihydroxybenzoate methyltransferase [Homo...
METTL7B               0.009   methyltransferase like 7B 
METT11D1              0.007   methyltransferase 11 domain containing 1 isoform 2 [...
METT11D1              0.007   methyltransferase 11 domain containing 1 isoform 1 [...
METTL7A               0.007   methyltransferase like 7A 
LOC100291520          0.007   PREDICTED: hypothetical protein XP_002347973 isofor...
LOC100291520          0.007   PREDICTED: hypothetical protein XP_002347974 isofor...
LOC100291520          0.007   PREDICTED: hypothetical protein XP_002347975 isofor...
POLE                  0.007   DNA-directed DNA polymerase epsilon 
TDRD7                 0.007   tudor domain containing 7 
RGS11                 0.006   regulator of G-protein signalling 11 isoform 1 [Homo...
RGS11                 0.006   regulator of G-protein signalling 11 isoform 2 
KRT12                 0.006   keratin 12 
NRXN1                 0.004   neurexin 1 isoform alpha2 precursor 
NRXN1                 0.004   neurexin 1 isoform alpha1 precursor 
WBSCR27               0.004   Williams-Beuren syndrome chromosome region 27 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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